Genomics Reporting Implementation Guide
4.0.0-ballot - STU 4 ballot International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-ballot built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

ValueSet: Molecular Biomarker Categories (Experimental)

Official URL: http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-biomarker-category-vs Version: 4.0.0-ballot
Standards status: Informative Computable Name: MolecularBiomarkerCategoryVS

This value set is drawn from the Molecular Biomarker Ontology code system, which provides codes that characterize a molecular biomarker.

References

Logical Definition (CLD)

 

Expansion

Expansion performed internally based on codesystem Molecular Biomarker Ontology Codes v4.0.0-ballot (CodeSystem)

This value set contains 17 concepts

LevelSystemCodeDisplay (en)JSONXML
1http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs  _physiologyBiomarkerCategoryMolecular biomarker physiologic role category
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    antibodyantibody category
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    antgenantigen category
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    cellReceptorcell receptor category
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    cellReceptorLigandcell receptor ligand category
1http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs  _moleculeTypeBiomarkerCategoryMolecular biomarker molecular type category
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    carbohydratecarbohydrate category
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    lipidlipid category
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    nucleicAcidnucleic acid category
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    proteinprotein category
1http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs  _methodBiomarkerCategoryMolecular biomarker method type category
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    enzymeAssayenzyme assay category
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    flowCytometryflow cytometry category
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    immuneStainimmune stain category
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    immunoassayimmunoassay category
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    methylationAnalysismethylation analysis category
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    molgenmolecular sequence adjacent category

Explanation of the columns that may appear on this page:

Level A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies
System The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance)
Display The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code