Genomics Reporting Implementation Guide
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Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-cibuild built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

ValueSet: Molecular Biomarker Categories (Experimental)

Official URL: http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-biomarker-category-vs Version: 4.0.0-cibuild
Standards status: Informative Computable Name: MolecularBiomarkerCategoryVS

This value set is drawn from the Molecular Biomarker Ontology code system, which provides codes that characterize a molecular biomarker.

References

Logical Definition (CLD)

 

Expansion

Expansion performed internally based on codesystem Molecular Biomarker Ontology Codes v4.0.0-cibuild (CodeSystem)

This value set contains 17 concepts

LevelSystemCodeDisplay (en)DefinitionJSONXML
1http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs  _physiologyBiomarkerCategoryMolecular biomarker physiologic role categoryA category based on the normal bodily function of the biomarker.
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    antibodyantibody categoryMolecular biomarker physiologic role is an antibody.
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    antgenantigen categoryMolecular biomarker physiologic role is an antigen.
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    cellReceptorcell receptor categoryMolecular biomarker physiologic role is a cell receptor.
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    cellReceptorLigandcell receptor ligand categoryMolecular biomarker physiologic role is a cell receptor ligand.
1http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs  _moleculeTypeBiomarkerCategoryMolecular biomarker molecular type categoryA category based on the type of biomarker molecule.
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    carbohydratecarbohydrate categoryMolecular biomarker molecule type is a carbohydrate.
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    lipidlipid categoryMolecular biomarker molecule type is a lipid.
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    nucleicAcidnucleic acid categoryMolecular biomarker molecule type is a nucleic acid.
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    proteinprotein categoryMolecular biomarker molecule type is a protein. Includes single or multi-subunit proteins with or without post-translational modifications.
1http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs  _methodBiomarkerCategoryMolecular biomarker method type categoryA category based on the measurement ascertainment method of the biomarker. (Methods are drawn from LOINC (https://loinc.org/kb/users-guide/major-parts-of-a-loinc-term/#type-of-method-6th-part) and NCBI Genetic Testing Registry (https://www.ncbi.nlm.nih.gov/gtr/)).
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    enzymeAssayenzyme assay categoryMolecular biomarker method is enzyme assay.
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    flowCytometryflow cytometry categoryMolecular biomarker method is flow cytometry.
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    immuneStainimmune stain categoryMolecular biomarker method is immune stain.
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    immunoassayimmunoassay categoryMolecular biomarker method is immunoassay.
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    methylationAnalysismethylation analysis categoryMolecular biomarker method is methylation analysis.
2http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs    molgenmolecular sequence adjacent categoryMolecular biomarker method is molecular sequence adjacent observation.

Explanation of the columns that may appear on this page:

Level A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies
System The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance)
Display The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code