Genomics Reporting Implementation Guide
4.0.0-cibuild - CI Build International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-cibuild built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

ValueSet: Knowledge Base Version Codes

Official URL: http://hl7.org/fhir/uv/genomics-reporting/ValueSet/knowledge-base-version-vs Version: 4.0.0-cibuild
Standards status: Trial-use Maturity Level: 2 Computable Name: KnowledgeBaseVersionVS

Value set for example terms to display the knowledge base version used to calculate and/or obtain data

References

Logical Definition (CLD)

 

Expansion

Expansion performed internally based on codesystem Knowledge Base Codes v4.0.0-cibuild (CodeSystem)

This value set contains 10 concepts

SystemCodeDisplay (en)DefinitionJSONXML
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/knowledge-base-cs  gnomadv4.1exomegnomad v4.1 exomegnomAD version 4.1 exome
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/knowledge-base-cs  gnomadv4.1genomegnomad v4.1 genomegnomAD version 4.1 genome
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/knowledge-base-cs  clinvar-april2024clinvar april 2024Clinvar April 2024 release
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/knowledge-base-cs  clinvar-march2024clinvar march 2024Clinvar March 2024 release
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/knowledge-base-cs  1000genomesv4.1.01000genomes v4.1.01000genomes version 4.1.0
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/knowledge-base-cs  civicv1.2.0civic v1.2.0CIViC version 1.2.0
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/knowledge-base-cs  graspv2.1.0grasp v2.1.0GRASP version 2.1.0
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/knowledge-base-cs  oncokbv1.5.2oncokb v1.5.2OncoKB version 1.5.2
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/knowledge-base-cs  pharmgkbv2.3.5pharmgkb v2.3.5PharmGKB version 2.3.5
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/knowledge-base-cs  phastconsv3.6.0phascons v.3.6.0PhastCons version 3.6.0

Explanation of the columns that may appear on this page:

Level A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies
System The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance)
Display The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code