Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

• Narrative Content
• XML
• JSON
• TTL

: tumorSpecimen - XML Representation

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<Specimen xmlns="http://hl7.org/fhir">
  <id value="tumorSpecimen"/>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: Specimen tumorSpecimen</b></p><a name="tumorSpecimen"> </a><a name="hctumorSpecimen"> </a><a name="tumorSpecimen-en-US"> </a><p><b>identifier</b>: <code>http://www.somesystemabc.net/identifiers/specimens</code>/222333</p><p><b>status</b>: Available</p><p><b>type</b>: <span title="Codes:{http://snomed.info/sct 122610009}">Specimen from lung obtained by biopsy (specimen)</span></p><p><b>subject</b>: <a href="Patient-somaticPatient.html">Hamsburg, Substance Jr</a></p><p><b>receivedTime</b>: 2023-01-23 01:01:01+0000</p><h3>Collections</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Collected[x]</b></td><td><b>Method</b></td><td><b>BodySite</b></td></tr><tr><td style="display: none">*</td><td>2023-01-01 01:01:00+0000</td><td><span title="Codes:{http://snomed.info/sct 129314006}">Biopsy - action</span></td><td><span title="Codes:{http://snomed.info/sct 3341006}">Right lung structure (body structure)</span></td></tr></table><p><b>note</b>: Tumor: 20%</p></div>
  </text>
  <identifier>
    <system value="http://www.somesystemabc.net/identifiers/specimens"/>
    <value value="222333"/>
  </identifier>
  <status value="available"/>
  <type>
    <coding>
      <system value="http://snomed.info/sct"/>
      <code value="122610009"/>
      <display value="Specimen from lung obtained by biopsy (specimen)"/>
    </coding>
  </type>
  <subject>🔗 
    <reference value="Patient/somaticPatient"/>
    <display value="Hamsburg, Substance Jr"/>
  </subject>
  <receivedTime value="2023-01-23T01:01:01Z"/>
  <collection>
    <collectedDateTime value="2023-01-01T01:01:00Z"/>
    <method>
      <coding>
        <system value="http://snomed.info/sct"/>
        <code value="129314006"/>
        <display value="Biopsy - action"/>
      </coding>
    </method>
    <bodySite>
      <coding>
        <system value="http://snomed.info/sct"/>
        <code value="3341006"/>
        <display value="Right lung structure (body structure)"/>
      </coding>
    </bodySite>
  </collection>
  <note>
    <text value="Tumor: 20%"/>
  </note>
</Specimen>