Genomics Reporting Implementation Guide
3.0.0 - release International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

: PGXGenomicStudyAnalysis - JSON Representation

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{
  "resourceType" : "Procedure",
  "id" : "PGXGenomicStudyAnalysis",
  "meta" : {
    "profile" : [
      🔗 "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis"
    ]
  },
  "text" : {
    "status" : "extensions",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Procedure PGXGenomicStudyAnalysis</b></p><a name=\"PGXGenomicStudyAnalysis\"> </a><a name=\"hcPGXGenomicStudyAnalysis\"> </a><a name=\"PGXGenomicStudyAnalysis-en-US\"> </a><p><b>Genomic Study Analysis Genome Build</b>: <span title=\"Codes:{http://loinc.org LA26806-2}\">GRCh38</span></p><blockquote><p><b>Genomic Study Analysis Metrics</b></p><ul><li>sequencing-coverage: 100</li></ul></blockquote><blockquote><p><b>Genomic Study Analysis Regions</b></p><ul><li>description: protein-coding and exon-splicing regions</li><li>studied: <span title=\"Codes:{http://www.genenames.org HGNC:2621}\">CYP2C19</span></li><li>studied: <span title=\"Codes:{http://www.genenames.org HGNC:2623}\">CYP2C9</span></li><li>studied: <span title=\"Codes:{http://www.genenames.org HGNC:23663}\">VKORC1</span></li></ul></blockquote><p><b>status</b>: Completed</p><p><b>category</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span></p><p><b>subject</b>: <a href=\"Patient-CGPatientExample01.html\">Adam B. Everyman  Male, DoB: 1951-01-20 ( Medical Record Number: m123\u00a0(use:\u00a0usual,\u00a0))</a></p><p><b>performed</b>: 2021-01-01 01:01:10-0600</p></div>"
  },
  "extension" : [
    {
      "url" : "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-genome-build",
      "valueCodeableConcept" : {
        "coding" : [
          {
            "system" : "http://loinc.org",
            "code" : "LA26806-2",
            "display" : "GRCh38"
          }
        ]
      }
    },
    {
      "extension" : [
        {
          "url" : "sequencing-coverage",
          "valueQuantity" : {
            "value" : 100
          }
        }
      ],
      "url" : "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-metrics"
    },
    {
      "extension" : [
        {
          "url" : "description",
          "valueString" : "protein-coding and exon-splicing regions"
        },
        {
          "url" : "studied",
          "valueCodeableConcept" : {
            "coding" : [
              {
                "system" : "http://www.genenames.org",
                "code" : "HGNC:2621",
                "display" : "CYP2C19"
              }
            ]
          }
        },
        {
          "url" : "studied",
          "valueCodeableConcept" : {
            "coding" : [
              {
                "system" : "http://www.genenames.org",
                "code" : "HGNC:2623",
                "display" : "CYP2C9"
              }
            ]
          }
        },
        {
          "url" : "studied",
          "valueCodeableConcept" : {
            "coding" : [
              {
                "system" : "http://www.genenames.org",
                "code" : "HGNC:23663",
                "display" : "VKORC1"
              }
            ]
          }
        }
      ],
      "url" : "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-regions"
    }
  ],
  "status" : "completed",
  "category" : {
    "coding" : [
      {
        "system" : "http://terminology.hl7.org/CodeSystem/observation-category",
        "code" : "laboratory"
      }
    ]
  },
  "subject" : {
    🔗 "reference" : "Patient/CGPatientExample01"
  },
  "performedDateTime" : "2021-01-01T01:01:10-06:00"
}