Situational Awareness for Novel Epidemic Response
1.0.1 - CI Build International flag

Situational Awareness for Novel Epidemic Response, published by HL7 International / Public Health. This guide is not an authorized publication; it is the continuous build for version 1.0.1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-saner/ and changes regularly. See the Directory of published versions

ValueSet: SARS CoV2 Labs

Official URL: http://hl7.org/fhir/uv/saner/ValueSet/SARSCoV2Labs Version: 1.0.1
Active as of 2020-04-17 Computable Name: SARSCoV2Labs
Other Identifiers: OID:2.16.840.1.113883.4.642.40.42.48.38

Copyright/Legal: This material contains content from LOINC (http://loinc.org). LOINC is copyright © 1995-2020, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee and is available at no cost under the license at http://loinc.org/license. LOINC® is a registered United States trademark of Regenstrief Institute, Inc

This Value Set identifies Lab tests related to detection of current or prior COVID-19 infection.

References

Logical Definition (CLD)

  • Include these codes as defined in http://loinc.org
    CodeDisplay
    94307-6SARS-CoV-2 (COVID-19) N gene [Presence] in Unspecified specimen by Nucleic acid amplification using CDC primer-probe set N1
    94308-4SARS-CoV-2 (COVID-19) N gene [Presence] in Unspecified specimen by Nucleic acid amplification using CDC primer-probe set N2
    94309-2SARS-CoV-2 (COVID-19) RNA [Presence] in Unspecified specimen by NAA with probe detection
    94310-0SARS-like coronavirus N gene [Presence] in Unspecified specimen by NAA with probe detection
    94314-2SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Unspecified specimen by NAA with probe detection
    94315-9SARS-related coronavirus E gene [Presence] in Unspecified specimen by NAA with probe detection
    94316-7SARS-CoV-2 (COVID-19) N gene [Presence] in Unspecified specimen by NAA with probe detection
    94500-6SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory specimen by NAA with probe detection
    94531-1SARS-CoV-2 (COVID-19) RNA panel - Respiratory specimen by NAA with probe detection
    94533-7SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory specimen by NAA with probe detection
    94534-5SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Respiratory specimen by NAA with probe detection
    94558-4SARS-CoV-2 (COVID-19) Ag [Presence] in Respiratory specimen by Rapid immunoassay
    94559-2SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Respiratory specimen by NAA with probe detection
    94759-8SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection

 

Expansion

Expansion based on Loinc v2.77

This value set contains 14 concepts.

CodeSystemDisplay
  94307-6http://loinc.orgSARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N1
  94308-4http://loinc.orgSARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N2
  94309-2http://loinc.orgSARS-CoV-2 (COVID-19) RNA [Presence] in Specimen by NAA with probe detection
  94310-0http://loinc.orgSARS-related coronavirus N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N3
  94314-2http://loinc.orgSARS-CoV-2 (COVID-19) RdRp gene [Presence] in Specimen by NAA with probe detection
  94315-9http://loinc.orgSARS-related coronavirus E gene [Presence] in Specimen by NAA with probe detection
  94316-7http://loinc.orgSARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by NAA with probe detection
  94500-6http://loinc.orgSARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection
  94531-1http://loinc.orgSARS-CoV-2 (COVID-19) RNA panel - Respiratory system specimen by NAA with probe detection
  94533-7http://loinc.orgSARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory system specimen by NAA with probe detection
  94534-5http://loinc.orgSARS-CoV-2 (COVID-19) RdRp gene [Presence] in Respiratory system specimen by NAA with probe detection
  94558-4http://loinc.orgSARS-CoV-2 (COVID-19) Ag [Presence] in Respiratory system specimen by Rapid immunoassay
  94559-2http://loinc.orgSARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Respiratory system specimen by NAA with probe detection
  94759-8http://loinc.orgSARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection

Explanation of the columns that may appear on this page:

Level A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies
System The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance)
Display The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code