SGHI FHIR Profile Implementation Guide, published by Kathurima Kimathi. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/savannahghi/sil_fhir_profile_ig/ and changes regularly. See the Directory of published versions

• Narrative Content
• XML
• JSON
• TTL

: Molecular Markers Value Sets - JSON Representation

Active as of 2026-09-15

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{
  "resourceType" : "ValueSet",
  "id" : "molecular-Markers",
  "text" : {
    "status" : "extensions",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ValueSet molecular-Markers</b></p><a name=\"molecular-Markers\"> </a><a name=\"hcmolecular-Markers\"> </a><ul><li>Include these codes as defined in <a href=\"CodeSystem-identifier-codesystem.html\"><code>https://fhir.slade360.co.ke/fhir/CodeSystem/identifier-codesystem</code></a><span title=\"Version is not explicitly stated, which means it is fixed to the version provided in this specification\"> version &#x1F4E6;0.1.0</span><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td><a href=\"CodeSystem-identifier-codesystem.html#identifier-codesystem-braf\">braf</a></td><td>BRAF Mutation</td><td>A mutation in the BRAF gene.</td></tr><tr><td><a href=\"CodeSystem-identifier-codesystem.html#identifier-codesystem-kras\">kras</a></td><td>KRAS Mutation</td><td>A mutation in the KRAS gene.</td></tr><tr><td><a href=\"CodeSystem-identifier-codesystem.html#identifier-codesystem-nras\">nras</a></td><td>NRAS Mutation</td><td>A mutation in the NRAS gene.</td></tr><tr><td><a href=\"CodeSystem-identifier-codesystem.html#identifier-codesystem-egfr\">egfr</a></td><td>EGFR Mutation</td><td>A mutation in the EGFR gene.</td></tr><tr><td><a href=\"CodeSystem-identifier-codesystem.html#identifier-codesystem-alk\">alk</a></td><td>ALK Rearrangement</td><td>A rearrangement involving the ALK gene.</td></tr><tr><td><a href=\"CodeSystem-identifier-codesystem.html#identifier-codesystem-her2\">her2</a></td><td>HER2 Amplification</td><td>Amplification of the HER2 gene.</td></tr><tr><td><a href=\"CodeSystem-identifier-codesystem.html#identifier-codesystem-pik3ca\">pik3ca</a></td><td>PIK3CA Mutation</td><td>A mutation in the PIK3CA gene.</td></tr><tr><td><a href=\"CodeSystem-identifier-codesystem.html#identifier-codesystem-pt53\">pt53</a></td><td>TP53 Mutation</td><td>A mutation in the TP53 gene.</td></tr><tr><td><a href=\"CodeSystem-identifier-codesystem.html#identifier-codesystem-msi\">msi</a></td><td>Microsatellite Instability</td><td>Instability in short repeated DNA sequences.</td></tr><tr><td><a href=\"CodeSystem-identifier-codesystem.html#identifier-codesystem-pdli\">pdli</a></td><td>PD-L1 Expression</td><td>Expression of the PD-L1 protein.</td></tr><tr><td><a href=\"CodeSystem-identifier-codesystem.html#identifier-codesystem-other\">other</a></td><td>Other</td><td>A value outside those enumerated for the element being recorded.</td></tr></table></li></ul></div>"
  },
  "url" : "https://fhir.slade360.co.ke/fhir/ValueSet/molecular-Markers",
  "version" : "0.1.0",
  "name" : "SGHISpecimenMolecularMarkersVs",
  "title" : "Molecular Markers Value Sets",
  "status" : "active",
  "date" : "2026-09-15T11:40:24+00:00",
  "publisher" : "Kathurima Kimathi",
  "contact" : [
    {
      "name" : "Kathurima Kimathi",
      "telecom" : [
        {
          "system" : "url",
          "value" : "https://www.linkedin.com/in/kathurima-kimathi/"
        },
        {
          "system" : "email",
          "value" : "kathurimakimathi415@gmail.com"
        }
      ]
    },
    {
      "name" : "Oscar John",
      "telecom" : [
        {
          "system" : "email",
          "value" : "oscarjohnotieno@gmail.com",
          "use" : "work"
        }
      ]
    },
    {
      "name" : "Kennedy Omondi",
      "telecom" : [
        {
          "system" : "email",
          "value" : "kennankole@gmail.com",
          "use" : "work"
        }
      ]
    }
  ],
  "description" : "Molecular Markers Value Sets",
  "compose" : {
    "include" : [
      {
        "system" : "https://fhir.slade360.co.ke/fhir/CodeSystem/identifier-codesystem",
        "concept" : [
          {
            "code" : "braf",
            "display" : "BRAF Mutation"
          },
          {
            "code" : "kras",
            "display" : "KRAS Mutation"
          },
          {
            "code" : "nras",
            "display" : "NRAS Mutation"
          },
          {
            "code" : "egfr",
            "display" : "EGFR Mutation"
          },
          {
            "code" : "alk",
            "display" : "ALK Rearrangement"
          },
          {
            "code" : "her2",
            "display" : "HER2 Amplification"
          },
          {
            "code" : "pik3ca",
            "display" : "PIK3CA Mutation"
          },
          {
            "code" : "pt53",
            "display" : "TP53 Mutation"
          },
          {
            "code" : "msi",
            "display" : "Microsatellite Instability"
          },
          {
            "code" : "pdli",
            "display" : "PD-L1 Expression"
          },
          {
            "code" : "other",
            "display" : "Other"
          }
        ]
      }
    ]
  }
}