SGHI FHIR Profile Implementation Guide
0.1.0 - ci-build
SGHI FHIR Profile Implementation Guide, published by Kathurima Kimathi. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/savannahghi/sil_fhir_profile_ig/ and changes regularly. See the Directory of published versions
| Official URL: https://fhir.slade360.co.ke/fhir/ValueSet/molecular-Markers | Version: 0.1.0 | |||
| Active as of 2026-09-15 | Computable Name: SGHISpecimenMolecularMarkersVs | |||
Molecular Markers Value Sets
References
This value set is not used here; it may be used elsewhere (e.g. specifications and/or implementations that use this content)
https://fhir.slade360.co.ke/fhir/CodeSystem/identifier-codesystem version 📦0.1.0| Code | Display | Definition |
| braf | BRAF Mutation | A mutation in the BRAF gene. |
| kras | KRAS Mutation | A mutation in the KRAS gene. |
| nras | NRAS Mutation | A mutation in the NRAS gene. |
| egfr | EGFR Mutation | A mutation in the EGFR gene. |
| alk | ALK Rearrangement | A rearrangement involving the ALK gene. |
| her2 | HER2 Amplification | Amplification of the HER2 gene. |
| pik3ca | PIK3CA Mutation | A mutation in the PIK3CA gene. |
| pt53 | TP53 Mutation | A mutation in the TP53 gene. |
| msi | Microsatellite Instability | Instability in short repeated DNA sequences. |
| pdli | PD-L1 Expression | Expression of the PD-L1 protein. |
| other | Other | A value outside those enumerated for the element being recorded. |
Expansion performed internally based on codesystem SGHI Identifier Code System v0.1.0 (CodeSystem)
This value set contains 11 concepts
| System | Code | Display (en) | Definition | JSON | XML |
https://fhir.slade360.co.ke/fhir/CodeSystem/identifier-codesystem | braf | BRAF Mutation | A mutation in the BRAF gene. | ||
https://fhir.slade360.co.ke/fhir/CodeSystem/identifier-codesystem | kras | KRAS Mutation | A mutation in the KRAS gene. | ||
https://fhir.slade360.co.ke/fhir/CodeSystem/identifier-codesystem | nras | NRAS Mutation | A mutation in the NRAS gene. | ||
https://fhir.slade360.co.ke/fhir/CodeSystem/identifier-codesystem | egfr | EGFR Mutation | A mutation in the EGFR gene. | ||
https://fhir.slade360.co.ke/fhir/CodeSystem/identifier-codesystem | alk | ALK Rearrangement | A rearrangement involving the ALK gene. | ||
https://fhir.slade360.co.ke/fhir/CodeSystem/identifier-codesystem | her2 | HER2 Amplification | Amplification of the HER2 gene. | ||
https://fhir.slade360.co.ke/fhir/CodeSystem/identifier-codesystem | pik3ca | PIK3CA Mutation | A mutation in the PIK3CA gene. | ||
https://fhir.slade360.co.ke/fhir/CodeSystem/identifier-codesystem | pt53 | TP53 Mutation | A mutation in the TP53 gene. | ||
https://fhir.slade360.co.ke/fhir/CodeSystem/identifier-codesystem | msi | Microsatellite Instability | Instability in short repeated DNA sequences. | ||
https://fhir.slade360.co.ke/fhir/CodeSystem/identifier-codesystem | pdli | PD-L1 Expression | Expression of the PD-L1 protein. | ||
https://fhir.slade360.co.ke/fhir/CodeSystem/identifier-codesystem | other | Other | A value outside those enumerated for the element being recorded. |
Explanation of the columns that may appear on this page:
| Level | A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies |
| System | The source of the definition of the code (when the value set draws in codes defined elsewhere) |
| Code | The code (used as the code in the resource instance) |
| Display | The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application |
| Definition | An explanation of the meaning of the concept |
| Comments | Additional notes about how to use the code |