Botswana FHIR Implementation Guide
1.0.0 - STU1 Botswana flag

Botswana FHIR Implementation Guide, published by Jembi Health Systems. This guide is not an authorized publication; it is the continuous build for version 1.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/jembi/botswana-hie-fhir-ig/ and changes regularly. See the Directory of published versions

Resource Profile: Specimen

Official URL: http://moh.bw.org/StructureDefinition/lab-order-specimen Version: 1.0.0
Active as of 2025-03-10 Computable Name: LabOrderSpecimen

The specimen associated with the lab order.

Usage:

Formal Views of Profile Content

Description of Profiles, Differentials, Snapshots and how the different presentations work.

NameFlagsCard.TypeDescription & Constraintsdoco
.. Specimen 0..* Specimen Sample for analysis
dom-2: If the resource is contained in another resource, it SHALL NOT contain nested Resources
dom-3: If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource
dom-4: If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated
dom-5: If a resource is contained in another resource, it SHALL NOT have a security label
dom-6: A resource should have narrative for robust management
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
ele-1: All FHIR elements must have a @value or children
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
ele-1: All FHIR elements must have a @value or children
ext-1: Must have either extensions or value[x], not both
... Slices for identifier Σ 1..* Identifier External Identifier
Slice: Unordered, Open by value:system
ele-1: All FHIR elements must have a @value or children
.... identifier:USID Σ 1..1 Identifier External Identifier
ele-1: All FHIR elements must have a @value or children
..... use ?!Σ 0..1 code usual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .


ele-1: All FHIR elements must have a @value or children
..... system Σ 1..1 uri The namespace for the identifier value
ele-1: All FHIR elements must have a @value or children
Required Pattern: http://moh.bw.org/identifier/specimen-id
..... value Σ 1..1 string The value that is unique
ele-1: All FHIR elements must have a @value or children
Example General: 123456
... type SΣ 0..1 CodeableConcept Kind of material that forms the specimen
Binding: hl7VS-specimenType (example): The type of the specimen.


ele-1: All FHIR elements must have a @value or children
... subject Σ 1..1 Reference(Botswana Patient) Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device
ele-1: All FHIR elements must have a @value or children
... receivedTime SΣ 0..1 dateTime The time when specimen was received for processing
ele-1: All FHIR elements must have a @value or children
... request 1..* Reference(ServiceRequest - Lab Orders) Why the specimen was collected
ele-1: All FHIR elements must have a @value or children
... collection 1..1 BackboneElement Collection details
ele-1: All FHIR elements must have a @value or children
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
ele-1: All FHIR elements must have a @value or children
ext-1: Must have either extensions or value[x], not both
.... collected[x] Σ 1..1 dateTime Collection time
ele-1: All FHIR elements must have a @value or children
.... Slices for fastingStatus[x] Σ 0..1 Whether or how long patient abstained from food and/or drink
Slice: Unordered, Open by type:$this
Binding: v2 Relevant Clincial Information . (extensible): Codes describing the fasting status of the patient.


ele-1: All FHIR elements must have a @value or children
..... fastingStatusCodeableConcept CodeableConcept
..... fastingStatusDuration Duration
..... fastingStatus[x]:fastingStatusCodeableConcept Σ 0..1 CodeableConcept Whether or how long patient abstained from food and/or drink
Binding: v2.0916 (2.9) . (required)
ele-1: All FHIR elements must have a @value or children
... condition Σ 0..* CodeableConcept State of the specimen
Binding: v2.0493 (2.9) . (required)
ele-1: All FHIR elements must have a @value or children

doco Documentation for this format

Terminology Bindings

PathConformanceValueSetURI
Specimen.identifier:USID.userequiredIdentifierUse
http://hl7.org/fhir/ValueSet/identifier-use|4.0.1
from the FHIR Standard
Specimen.statusrequiredSpecimenStatus
http://hl7.org/fhir/ValueSet/specimen-status|4.0.1
from the FHIR Standard
Specimen.typeexampleHl7VSSpecimenType
http://terminology.hl7.org/ValueSet/v2-0487
Specimen.collection.fastingStatus[x]extensiblev2.0916 .
http://terminology.hl7.org/ValueSet/v2-0916
Specimen.collection.fastingStatus[x]:fastingStatusCodeableConceptrequiredv2.0916 .
http://terminology.hl7.org/ValueSet/v2-0916|2.9
Specimen.conditionrequiredv2.0493 .
http://terminology.hl7.org/ValueSet/v2-0493|2.9

Constraints

IdGradePath(s)DetailsRequirements
dom-2errorSpecimenIf the resource is contained in another resource, it SHALL NOT contain nested Resources
: contained.contained.empty()
dom-3errorSpecimenIf the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource
: contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4errorSpecimenIf a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated
: contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5errorSpecimenIf a resource is contained in another resource, it SHALL NOT have a security label
: contained.meta.security.empty()
dom-6best practiceSpecimenA resource should have narrative for robust management
: text.`div`.exists()
ele-1error**ALL** elementsAll FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ext-1error**ALL** extensionsMust have either extensions or value[x], not both
: extension.exists() != value.exists()

 

Other representations of profile: CSV, Excel, Schematron