AU Base Implementation Guide
5.0.1-ci-build - CI Build
AU Base Implementation Guide
5.0.1-ci-build - CI Build
AU Base Implementation Guide, published by HL7 Australia. This guide is not an authorized publication; it is the continuous build for version 5.0.1-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7au/au-fhir-base/ and changes regularly. See the Directory of published versions
| Official URL: http://hl7.org.au/fhir/StructureDefinition/au-specimen | Version: 5.0.1-ci-build | |||
| Standards status: Trial-use | Maturity Level: 1 | Computable Name: AUBaseSpecimen | ||
Copyright/Legal: HL7 Australia© 2018+; Licensed Under Creative Commons No Rights Reserved. |
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This profile defines a specimen structure that localises core concepts, including terminology, for use in an Australian context. The purpose of this profile is to provide national level agreement on core localised concepts. This profile does not force conformance to core localised concepts. It enables implementers and modellers to make their own rules, i.e. profiling, about how to support these concepts for specific implementation needs.
Usage:
Changes since version 5.0.0:
Description of Profiles, Differentials, Snapshots and how the different presentations work.
This structure is derived from Specimen
| Name | Flags | Card. | Type | Description & Constraints |
|---|---|---|---|---|
  Specimen |
0..* | Specimen | A specimen in an Australian healthcare context | |
  type |
0..1 | CodeableConcept | Kind of material that forms the specimen Binding: Specimen Type  (preferred) | |
 parent |
0..* | Reference(AU Base Specimen) | Specimen from which this specimen originated | |
 collection |
0..1 | BackboneElement | Collection details | |
 method |
0..1 | CodeableConcept | Technique used to perform collection Binding: Specimen Collection Procedure (preferred) | |
 bodySite |
0..1 | CodeableConcept | Anatomical collection site Binding: Body Site (preferred) | |
| container |
0..* | BackboneElement | Direct container of specimen (tube/slide, etc.) Binding: Specimen Container Type (preferred) | |
| Documentation for this format | ||||
| Path | Conformance | ValueSet | URI |
| Specimen.type | preferred | SpecimenType https://healthterminologies.gov.au/fhir/ValueSet/specimen-type-1 | |
| Specimen.collection.method | preferred | SpecimenCollectionProcedure https://healthterminologies.gov.au/fhir/ValueSet/specimen-collection-procedure-1 | |
| Specimen.collection.bodySite | preferred | BodySite https://healthterminologies.gov.au/fhir/ValueSet/body-site-1 | |
| Specimen.container | preferred | SpecimenContainerType https://healthterminologies.gov.au/fhir/ValueSet/specimen-container-type-1 |
| Name | Flags | Card. | Type | Description & Constraints |
|---|---|---|---|---|
| Specimen |
0..* | Specimen | A specimen in an Australian healthcare context dom-2: If the resource is contained in another resource, it SHALL NOT contain nested Resources dom-3: If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource dom-4: If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated dom-5: If a resource is contained in another resource, it SHALL NOT have a security label dom-6: A resource should have narrative for robust management | |
 implicitRules |
?!Σ | 0..1 | uri | A set of rules under which this content was created ele-1: All FHIR elements must have a @value or children |
 modifierExtension |
?! | 0..* | Extension | Extensions that cannot be ignored ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both |
| status |
?!Σ | 0..1 | code | available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen. ele-1: All FHIR elements must have a @value or children |
 type |
Σ | 0..1 | CodeableConcept | Kind of material that forms the specimen Binding: Specimen Type (preferred)ele-1: All FHIR elements must have a @value or children |
| parent |
0..* | Reference(AU Base Specimen) | Specimen from which this specimen originated ele-1: All FHIR elements must have a @value or children | |
| collection |
0..1 | BackboneElement | Collection details ele-1: All FHIR elements must have a @value or children | |
| modifierExtension |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both |
| method |
0..1 | CodeableConcept | Technique used to perform collection Binding: Specimen Collection Procedure (preferred)ele-1: All FHIR elements must have a @value or children | |
| bodySite |
0..1 | CodeableConcept | Anatomical collection site Binding: Body Site (preferred)ele-1: All FHIR elements must have a @value or children | |
 container |
0..* | BackboneElement | Direct container of specimen (tube/slide, etc.) ele-1: All FHIR elements must have a @value or children | |
 modifierExtension |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both |
| Documentation for this format | ||||
| Path | Conformance | ValueSet | URI |
| Specimen.status | required | SpecimenStatushttp://hl7.org/fhir/ValueSet/specimen-status|4.0.1from the FHIR Standard | |
| Specimen.type | preferred | SpecimenType https://healthterminologies.gov.au/fhir/ValueSet/specimen-type-1 | |
| Specimen.collection.method | preferred | SpecimenCollectionProcedure https://healthterminologies.gov.au/fhir/ValueSet/specimen-collection-procedure-1 | |
| Specimen.collection.bodySite | preferred | BodySite https://healthterminologies.gov.au/fhir/ValueSet/body-site-1 |
| Id | Grade | Path(s) | Details | Requirements |
| dom-2 | error | Specimen | If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty() | |
| dom-3 | error | Specimen | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty() | |
| dom-4 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty() | |
| dom-5 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty() | |
| dom-6 | best practice | Specimen | A resource should have narrative for robust management : text.`div`.exists() | |
| ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) | |
| ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both : extension.exists() != value.exists() |
| Name | Flags | Card. | Type | Description & Constraints | ||||
|---|---|---|---|---|---|---|---|---|
| Specimen |
0..* | Specimen | A specimen in an Australian healthcare context | |||||
| id |
Σ | 0..1 | id | Logical id of this artifact | ||||
| meta |
Σ | 0..1 | Meta | Metadata about the resource | ||||
| implicitRules |
?!Σ | 0..1 | uri | A set of rules under which this content was created | ||||
| language |
0..1 | code | Language of the resource content Binding: CommonLanguages (preferred): A human language.
| |||||
| text |
0..1 | Narrative | Text summary of the resource, for human interpretation | |||||
| contained |
0..* | Resource | Contained, inline Resources | |||||
 extension |
0..* | Extension | Additional content defined by implementations | |||||
| modifierExtension |
?! | 0..* | Extension | Extensions that cannot be ignored | ||||
| identifier |
Σ | 0..* | Identifier | External Identifier | ||||
| accessionIdentifier |
Σ | 0..1 | Identifier | Identifier assigned by the lab | ||||
| status |
?!Σ | 0..1 | code | available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen. | ||||
| type |
Σ | 0..1 | CodeableConcept | Kind of material that forms the specimen Binding: Specimen Type (preferred) | ||||
| subject |
Σ | 0..1 | Reference(Patient | Group | Device | Substance | Location) | Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device | ||||
| receivedTime |
Σ | 0..1 | dateTime | The time when specimen was received for processing | ||||
| parent |
0..* | Reference(AU Base Specimen) | Specimen from which this specimen originated | |||||
| request |
0..* | Reference(ServiceRequest) | Why the specimen was collected | |||||
| collection |
0..1 | BackboneElement | Collection details | |||||
| id |
0..1 | string | Unique id for inter-element referencing | |||||
| extension |
0..* | Extension | Additional content defined by implementations | |||||
| modifierExtension |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
| collector |
Σ | 0..1 | Reference(Practitioner | PractitionerRole) | Who collected the specimen | ||||
 collected[x] |
Σ | 0..1 | Collection time | |||||
| collectedDateTime |
dateTime | |||||||
| collectedPeriod |
Period | |||||||
| duration |
Σ | 0..1 | Duration | How long it took to collect specimen | ||||
| quantity |
0..1 | SimpleQuantity | The quantity of specimen collected | |||||
| method |
0..1 | CodeableConcept | Technique used to perform collection Binding: Specimen Collection Procedure (preferred) | |||||
| bodySite |
0..1 | CodeableConcept | Anatomical collection site Binding: Body Site (preferred) | |||||
| fastingStatus[x] |
Σ | 0..1 | Whether or how long patient abstained from food and/or drink Binding: hl7VS-relevantClincialInformation (extensible): Codes describing the fasting status of the patient. | |||||
| fastingStatusCodeableConcept |
CodeableConcept | |||||||
| fastingStatusDuration |
Duration | |||||||
| processing |
0..* | BackboneElement | Processing and processing step details | |||||
| id |
0..1 | string | Unique id for inter-element referencing | |||||
| extension |
0..* | Extension | Additional content defined by implementations | |||||
| modifierExtension |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
| description |
0..1 | string | Textual description of procedure | |||||
| procedure |
0..1 | CodeableConcept | Indicates the treatment step applied to the specimen Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen. | |||||
| additive |
0..* | Reference(Substance) | Material used in the processing step | |||||
| time[x] |
0..1 | Date and time of specimen processing | ||||||
| timeDateTime |
dateTime | |||||||
| timePeriod |
Period | |||||||
| container |
0..* | BackboneElement | Direct container of specimen (tube/slide, etc.) | |||||
| id |
0..1 | string | Unique id for inter-element referencing | |||||
| extension |
0..* | Extension | Additional content defined by implementations | |||||
| modifierExtension |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
| identifier |
Σ | 0..* | Identifier | Id for the container | ||||
| description |
0..1 | string | Textual description of the container | |||||
| type |
0..1 | CodeableConcept | Kind of container directly associated with specimen Binding: SpecimenContainerType (example): Type of specimen container. | |||||
| capacity |
0..1 | SimpleQuantity | Container volume or size | |||||
| specimenQuantity |
0..1 | SimpleQuantity | Quantity of specimen within container | |||||
| additive[x] |
0..1 | Additive associated with container Binding: hl7VS-additivePreservative (example): Substance added to specimen container. | ||||||
| additiveCodeableConcept |
CodeableConcept | |||||||
| additiveReference |
Reference(Substance) | |||||||
| condition |
Σ | 0..* | CodeableConcept | State of the specimen Binding: hl7VS-specimenCondition (extensible): Codes describing the state of the specimen. | ||||
| note |
0..* | Annotation | Comments | |||||
| Documentation for this format | ||||||||
| Path | Conformance | ValueSet | URI | |||
| Specimen.language | preferred | CommonLanguageshttp://hl7.org/fhir/ValueSet/languagesfrom the FHIR Standard
| ||||
| Specimen.status | required | SpecimenStatushttp://hl7.org/fhir/ValueSet/specimen-status|4.0.1from the FHIR Standard | ||||
| Specimen.type | preferred | SpecimenType https://healthterminologies.gov.au/fhir/ValueSet/specimen-type-1 | ||||
| Specimen.collection.method | preferred | SpecimenCollectionProcedure https://healthterminologies.gov.au/fhir/ValueSet/specimen-collection-procedure-1 | ||||
| Specimen.collection.bodySite | preferred | BodySite https://healthterminologies.gov.au/fhir/ValueSet/body-site-1 | ||||
| Specimen.collection.fastingStatus[x] | extensible | Hl7VSRelevantClincialInformationhttp://terminology.hl7.org/ValueSet/v2-0916 | ||||
| Specimen.processing.procedure | example | SpecimenProcessingProcedurehttp://hl7.org/fhir/ValueSet/specimen-processing-procedurefrom the FHIR Standard | ||||
| Specimen.container.type | example | SpecimenContainerTypehttp://hl7.org/fhir/ValueSet/specimen-container-typefrom the FHIR Standard | ||||
| Specimen.container.additive[x] | example | Hl7VSAdditivePreservativehttp://terminology.hl7.org/ValueSet/v2-0371 | ||||
| Specimen.condition | extensible | Hl7VSSpecimenConditionhttp://terminology.hl7.org/ValueSet/v2-0493 |
| Id | Grade | Path(s) | Details | Requirements |
| dom-2 | error | Specimen | If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty() | |
| dom-3 | error | Specimen | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty() | |
| dom-4 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty() | |
| dom-5 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty() | |
| dom-6 | best practice | Specimen | A resource should have narrative for robust management : text.`div`.exists() | |
| ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) | |
| ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both : extension.exists() != value.exists() |
Differential View
This structure is derived from Specimen
| Name | Flags | Card. | Type | Description & Constraints |
|---|---|---|---|---|
| Specimen |
0..* | Specimen | A specimen in an Australian healthcare context | |
| type |
0..1 | CodeableConcept | Kind of material that forms the specimen Binding: Specimen Type (preferred) | |
| parent |
0..* | Reference(AU Base Specimen) | Specimen from which this specimen originated | |
| collection |
0..1 | BackboneElement | Collection details | |
| method |
0..1 | CodeableConcept | Technique used to perform collection Binding: Specimen Collection Procedure (preferred) | |
| bodySite |
0..1 | CodeableConcept | Anatomical collection site Binding: Body Site (preferred) | |
| container |
0..* | BackboneElement | Direct container of specimen (tube/slide, etc.) Binding: Specimen Container Type (preferred) | |
| Documentation for this format | ||||
| Path | Conformance | ValueSet | URI |
| Specimen.type | preferred | SpecimenType https://healthterminologies.gov.au/fhir/ValueSet/specimen-type-1 | |
| Specimen.collection.method | preferred | SpecimenCollectionProcedure https://healthterminologies.gov.au/fhir/ValueSet/specimen-collection-procedure-1 | |
| Specimen.collection.bodySite | preferred | BodySite https://healthterminologies.gov.au/fhir/ValueSet/body-site-1 | |
| Specimen.container | preferred | SpecimenContainerType https://healthterminologies.gov.au/fhir/ValueSet/specimen-container-type-1 |
Key Elements View
| Name | Flags | Card. | Type | Description & Constraints |
|---|---|---|---|---|
| Specimen |
0..* | Specimen | A specimen in an Australian healthcare context dom-2: If the resource is contained in another resource, it SHALL NOT contain nested Resources dom-3: If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource dom-4: If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated dom-5: If a resource is contained in another resource, it SHALL NOT have a security label dom-6: A resource should have narrative for robust management | |
| implicitRules |
?!Σ | 0..1 | uri | A set of rules under which this content was created ele-1: All FHIR elements must have a @value or children |
| modifierExtension |
?! | 0..* | Extension | Extensions that cannot be ignored ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both |
| status |
?!Σ | 0..1 | code | available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen. ele-1: All FHIR elements must have a @value or children |
| type |
Σ | 0..1 | CodeableConcept | Kind of material that forms the specimen Binding: Specimen Type (preferred)ele-1: All FHIR elements must have a @value or children |
| parent |
0..* | Reference(AU Base Specimen) | Specimen from which this specimen originated ele-1: All FHIR elements must have a @value or children | |
| collection |
0..1 | BackboneElement | Collection details ele-1: All FHIR elements must have a @value or children | |
| modifierExtension |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both |
| method |
0..1 | CodeableConcept | Technique used to perform collection Binding: Specimen Collection Procedure (preferred)ele-1: All FHIR elements must have a @value or children | |
| bodySite |
0..1 | CodeableConcept | Anatomical collection site Binding: Body Site (preferred)ele-1: All FHIR elements must have a @value or children | |
| container |
0..* | BackboneElement | Direct container of specimen (tube/slide, etc.) ele-1: All FHIR elements must have a @value or children | |
| modifierExtension |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both |
| Documentation for this format | ||||
| Path | Conformance | ValueSet | URI |
| Specimen.status | required | SpecimenStatushttp://hl7.org/fhir/ValueSet/specimen-status|4.0.1from the FHIR Standard | |
| Specimen.type | preferred | SpecimenType https://healthterminologies.gov.au/fhir/ValueSet/specimen-type-1 | |
| Specimen.collection.method | preferred | SpecimenCollectionProcedure https://healthterminologies.gov.au/fhir/ValueSet/specimen-collection-procedure-1 | |
| Specimen.collection.bodySite | preferred | BodySite https://healthterminologies.gov.au/fhir/ValueSet/body-site-1 |
| Id | Grade | Path(s) | Details | Requirements |
| dom-2 | error | Specimen | If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty() | |
| dom-3 | error | Specimen | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty() | |
| dom-4 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty() | |
| dom-5 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty() | |
| dom-6 | best practice | Specimen | A resource should have narrative for robust management : text.`div`.exists() | |
| ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) | |
| ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both : extension.exists() != value.exists() |
Snapshot View
| Name | Flags | Card. | Type | Description & Constraints | ||||
|---|---|---|---|---|---|---|---|---|
| Specimen |
0..* | Specimen | A specimen in an Australian healthcare context | |||||
| id |
Σ | 0..1 | id | Logical id of this artifact | ||||
| meta |
Σ | 0..1 | Meta | Metadata about the resource | ||||
| implicitRules |
?!Σ | 0..1 | uri | A set of rules under which this content was created | ||||
| language |
0..1 | code | Language of the resource content Binding: CommonLanguages (preferred): A human language.
| |||||
| text |
0..1 | Narrative | Text summary of the resource, for human interpretation | |||||
| contained |
0..* | Resource | Contained, inline Resources | |||||
| extension |
0..* | Extension | Additional content defined by implementations | |||||
| modifierExtension |
?! | 0..* | Extension | Extensions that cannot be ignored | ||||
| identifier |
Σ | 0..* | Identifier | External Identifier | ||||
| accessionIdentifier |
Σ | 0..1 | Identifier | Identifier assigned by the lab | ||||
| status |
?!Σ | 0..1 | code | available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen. | ||||
| type |
Σ | 0..1 | CodeableConcept | Kind of material that forms the specimen Binding: Specimen Type (preferred) | ||||
| subject |
Σ | 0..1 | Reference(Patient | Group | Device | Substance | Location) | Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device | ||||
| receivedTime |
Σ | 0..1 | dateTime | The time when specimen was received for processing | ||||
| parent |
0..* | Reference(AU Base Specimen) | Specimen from which this specimen originated | |||||
| request |
0..* | Reference(ServiceRequest) | Why the specimen was collected | |||||
| collection |
0..1 | BackboneElement | Collection details | |||||
| id |
0..1 | string | Unique id for inter-element referencing | |||||
| extension |
0..* | Extension | Additional content defined by implementations | |||||
| modifierExtension |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
| collector |
Σ | 0..1 | Reference(Practitioner | PractitionerRole) | Who collected the specimen | ||||
| collected[x] |
Σ | 0..1 | Collection time | |||||
| collectedDateTime |
dateTime | |||||||
| collectedPeriod |
Period | |||||||
| duration |
Σ | 0..1 | Duration | How long it took to collect specimen | ||||
| quantity |
0..1 | SimpleQuantity | The quantity of specimen collected | |||||
| method |
0..1 | CodeableConcept | Technique used to perform collection Binding: Specimen Collection Procedure (preferred) | |||||
| bodySite |
0..1 | CodeableConcept | Anatomical collection site Binding: Body Site (preferred) | |||||
| fastingStatus[x] |
Σ | 0..1 | Whether or how long patient abstained from food and/or drink Binding: hl7VS-relevantClincialInformation (extensible): Codes describing the fasting status of the patient. | |||||
| fastingStatusCodeableConcept |
CodeableConcept | |||||||
| fastingStatusDuration |
Duration | |||||||
| processing |
0..* | BackboneElement | Processing and processing step details | |||||
| id |
0..1 | string | Unique id for inter-element referencing | |||||
| extension |
0..* | Extension | Additional content defined by implementations | |||||
| modifierExtension |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
| description |
0..1 | string | Textual description of procedure | |||||
| procedure |
0..1 | CodeableConcept | Indicates the treatment step applied to the specimen Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen. | |||||
| additive |
0..* | Reference(Substance) | Material used in the processing step | |||||
| time[x] |
0..1 | Date and time of specimen processing | ||||||
| timeDateTime |
dateTime | |||||||
| timePeriod |
Period | |||||||
| container |
0..* | BackboneElement | Direct container of specimen (tube/slide, etc.) | |||||
| id |
0..1 | string | Unique id for inter-element referencing | |||||
| extension |
0..* | Extension | Additional content defined by implementations | |||||
| modifierExtension |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
| identifier |
Σ | 0..* | Identifier | Id for the container | ||||
| description |
0..1 | string | Textual description of the container | |||||
| type |
0..1 | CodeableConcept | Kind of container directly associated with specimen Binding: SpecimenContainerType (example): Type of specimen container. | |||||
| capacity |
0..1 | SimpleQuantity | Container volume or size | |||||
| specimenQuantity |
0..1 | SimpleQuantity | Quantity of specimen within container | |||||
| additive[x] |
0..1 | Additive associated with container Binding: hl7VS-additivePreservative (example): Substance added to specimen container. | ||||||
| additiveCodeableConcept |
CodeableConcept | |||||||
| additiveReference |
Reference(Substance) | |||||||
| condition |
Σ | 0..* | CodeableConcept | State of the specimen Binding: hl7VS-specimenCondition (extensible): Codes describing the state of the specimen. | ||||
| note |
0..* | Annotation | Comments | |||||
| Documentation for this format | ||||||||
| Path | Conformance | ValueSet | URI | |||
| Specimen.language | preferred | CommonLanguageshttp://hl7.org/fhir/ValueSet/languagesfrom the FHIR Standard
| ||||
| Specimen.status | required | SpecimenStatushttp://hl7.org/fhir/ValueSet/specimen-status|4.0.1from the FHIR Standard | ||||
| Specimen.type | preferred | SpecimenType https://healthterminologies.gov.au/fhir/ValueSet/specimen-type-1 | ||||
| Specimen.collection.method | preferred | SpecimenCollectionProcedure https://healthterminologies.gov.au/fhir/ValueSet/specimen-collection-procedure-1 | ||||
| Specimen.collection.bodySite | preferred | BodySite https://healthterminologies.gov.au/fhir/ValueSet/body-site-1 | ||||
| Specimen.collection.fastingStatus[x] | extensible | Hl7VSRelevantClincialInformationhttp://terminology.hl7.org/ValueSet/v2-0916 | ||||
| Specimen.processing.procedure | example | SpecimenProcessingProcedurehttp://hl7.org/fhir/ValueSet/specimen-processing-procedurefrom the FHIR Standard | ||||
| Specimen.container.type | example | SpecimenContainerTypehttp://hl7.org/fhir/ValueSet/specimen-container-typefrom the FHIR Standard | ||||
| Specimen.container.additive[x] | example | Hl7VSAdditivePreservativehttp://terminology.hl7.org/ValueSet/v2-0371 | ||||
| Specimen.condition | extensible | Hl7VSSpecimenConditionhttp://terminology.hl7.org/ValueSet/v2-0493 |
| Id | Grade | Path(s) | Details | Requirements |
| dom-2 | error | Specimen | If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty() | |
| dom-3 | error | Specimen | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty() | |
| dom-4 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty() | |
| dom-5 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty() | |
| dom-6 | best practice | Specimen | A resource should have narrative for robust management : text.`div`.exists() | |
| ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) | |
| ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both : extension.exists() != value.exists() |
Other representations of profile: CSV, Excel, Schematron
IG © 2017+ HL7 Australia. Package hl7.fhir.au.base#5.0.1-ci-build based on FHIR 4.0.1. Generated 2025-03-05
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