HL7 Europe Common Cancer Model
0.1.0 - ci-build 150

HL7 Europe Common Cancer Model, published by HL7 Europe. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/cancer-common/ and changes regularly. See the Directory of published versions

CancerPatient Mapping - OMOP

CancerPatient -> PERSON / OBSERVATION / CONDITION_OCCURRENCE
Yellow row/cells: In this ballot publication, some row/cells of the mapping table have been left in yellow to indicate areas requiring further review or refinement; including feedback from the Xt-EHR joint action (see note above). These highlights will be addressed in subsequent updates to ensure accuracy and completeness of the mappings.

CancerPatient -> PERSON / OBSERVATION / CONDITION_OCCURRENCE

This page explains how elements from the CancerPatient logical model are expressed in OMOP, using the PERSON, OBSERVATION and CONDITION_OCCURRENCE table.

Mapping Context
  • Source logical model: CancerPatient
  • Target OMOP Tables: PERSON / OBSERVATION / CONDITION_OCCURRENCE

CancerPatient -> PERSON / OBSERVATION / CONDITION_OCCURRENCE
CancerPatient (Logical Model) Relationship PERSON / OBSERVATION / CONDITION_OCCURRENCE
Element Relation Table Field(s) Notes
birthDate equivalent PERSON year_of_birth, month_of_birth, day_of_birth Only year_of_birth is mandatory
sexAtBirth equivalent PERSON gender_concept_id See below for code mapping.
observedSexGender equivalent OBSERVATION observation_concept_id More information here. Codings can be found here.
comorbiditiesAtCancerDiagnosis equivalent CONDITION_OCCURRENCE condition_concept_id
comorbiditiesAtCancerDiagnosis equivalent OBSERVATION observation_concept_id

sexAtBirth Logical Model Coding -> OMOP Coding
sexAtBirth (Logical Model) Relationship gender_concept_id (OMOP)
Male equivalent 8507
Female equivalent 8532
Unknown equivalent 0
Other equivalent 0

Return to overview: Cancer Logical Models -> OMOP