define "SDE Sex":
  case
      when Patient.gender = 'male' then Code { code: 'M', system: 'http://hl7.org/fhir/v3/AdministrativeGender', display: 'Male' }
      when Patient.gender = 'female' then Code { code: 'F', system: 'http://hl7.org/fhir/v3/AdministrativeGender', display: 'Female' }
      else null
    end

define "SDE Sex":
  SDE."SDE Sex"

define "Inpatient Encounters":
  from
    ["Encounter": "Encounter Inpatient"] InpatientEncounter,
    ["Coverage": "Medicare payer"] Payer
    where InpatientEncounter.status = 'finished'
      and ( InpatientEncounter.class ~ "IMP"
          or InpatientEncounter.class ~ "ACUTE"
          or InpatientEncounter.class ~ "NONAC"
          or InpatientEncounter.class ~ "OBSENC"
      )
      and AgeInYearsAt(date from start of InpatientEncounter.period) in Interval[65, 94]
      and InpatientEncounter.hospitalizationWithObservationLengthofStay ( ) < 365
      and InpatientEncounter.period ends during day of "Measurement Period"
    return InpatientEncounter

/*Inpatient encounter initially listed as AMB class; changed this to inpatient classes as discussed with CORE team- AM*/


define "Results":
  flatten {
    //First physical exams (vital signs)       
  "FirstPhysicalExamWithEncounterId"([Observation: "Heart Rate"], 'FirstHeartRate'), "FirstPhysicalExamWithEncounterId"([Observation: "Systolic Blood Pressure"], 'FirstSystolicBP'), "FirstPhysicalExamWithEncounterId"([Observation: "Body temperature"], 'FirstTemperature'), "FirstPhysicalExamWithEncounterId"([Observation: "Oxygen Saturation by Pulse Oximetry"], 'FirstO2Saturation'),
    //First lab tests
  "FirstLabTestWithEncounterId"([Observation: "Hematocrit lab test"], 'FirstHematocrit'), "FirstLabTestWithEncounterId"([Observation: "Platelet count lab test"], 'FirstPlateletCount'), "FirstLabTestWithEncounterId"([Observation: "White blood cells count lab test"], 'FirstWhiteBloodCell'), "FirstLabTestWithEncounterId"([Observation: "Sodium lab test"], 'FirstSodium'), "FirstLabTestWithEncounterId"([Observation: "Bicarbonate lab test"], 'FirstBicarbonate'), "FirstLabTestWithEncounterId"([Observation: "Creatinine lab test"], 'FirstCreatinine') }

define "SDE Payer":
  [Coverage: type in "Payer Type"] Payer
    return {
      code: Payer.type,
      period: Payer.period
    }

define "SDE Payer":
  SDE."SDE Payer"

define "Initial Population":
  "Inpatient Encounters"

define "SDE Ethnicity":
  Patient.ethnicity E
    return Tuple {
      codes: { E.ombCategory } union E.detailed,
      display: E.text
    }

define "SDE Ethnicity":
  SDE."SDE Ethnicity"

define "SDE Race":
  Patient.race R
    return Tuple {
      codes: R.ombCategory union R.detailed,
      display: R.text
    }

define "SDE Race":
  SDE."SDE Race"

define function "FirstPhysicalExamWithEncounterId"(ExamList List<Observation>, CCDE String):
  "Inpatient Encounters" Encounter
    let firstexam: First(ExamList Exam
        where start of QICoreCommon."ToInterval"(Exam.effective) is not null
          and start of QICoreCommon."ToInterval"(Exam.effective) during Interval[start of Encounter.period - 1440 minutes, start of Encounter.period + 120 minutes]
          and Exam.status in { 'final', 'amended', 'preliminary' }
          and Exam.value is not null
        sort by start of QICoreCommon."ToInterval"(effective)
    )
    return '\r\n' & CCDE & ',' & Encounter.id & ' , ' & ( ToString(firstexam.value as Quantity) ) & ',' & ToString(start of QICoreCommon."ToInterval"(firstexam.effective))

/*
@description: Hospitalization with Observation Length of Stay returns the length in days from the start of any immediately prior emergency department visit through the observation visit to the discharge of the given encounter
*/
define fluent function hospitalizationWithObservationLengthofStay(TheEncounter "Encounter" ):
  ((TheEncounter."hospitalizationWithObservation"(). "lengthInDays"()))

/*
@description: Calculates the difference in calendar days between the start and end of the given interval.
*/
define fluent function lengthInDays(Value Interval<DateTime> ):
  difference in days between start of Value and end of Value

/*
@description: Hospitalization with Observation returns the total interval from the start of any immediately prior emergency department visit through the observation visit to the discharge of the given encounter
*/
define fluent function hospitalizationWithObservation(TheEncounter Encounter ):
  TheEncounter Visit
  		let ObsVisit: Last([Encounter: "Observation Services"] LastObs
  				where LastObs.status = 'finished'
            and LastObs.period ends 1 hour or less on or before start of Visit.period
  				sort by end of period
  			),
  			VisitStart: Coalesce(start of ObsVisit.period, start of Visit.period),
  			EDVisit: Last([Encounter: "Emergency Department Visit"] LastED
  				where LastED.status = 'finished'
            and LastED.period ends 1 hour or less on or before VisitStart
  				sort by end of period
  			)
  		return Interval[Coalesce(start of EDVisit.period, VisitStart), end of Visit.period]

/*
@description: Normalizes a value that is a choice of timing-valued types to an equivalent interval
@comment: Normalizes a choice type of DateTime, Quanitty, Interval<DateTime>, or Interval<Quantity> types
to an equivalent interval. This selection of choice types is a superset of the majority of choice types that are used as possible
representations for timing-valued elements in QICore, allowing this function to be used across any resource.
The input can be provided as a DateTime, Quantity, Interval<DateTime> or Interval<Quantity>.
The intent of this function is to provide a clear and concise mechanism to treat single
elements that have multiple possible representations as intervals so that logic doesn't have to account
for the variability. More complex calculations (such as medication request period or dispense period
calculation) need specific guidance and consideration. That guidance may make use of this function, but
the focus of this function is on single element calculations where the semantics are unambiguous.
If the input is a DateTime, the result a DateTime Interval beginning and ending on that DateTime.
If the input is a Quantity, the quantity is expected to be a calendar-duration interpreted as an Age,
and the result is a DateTime Interval beginning on the Date the patient turned that age and ending immediately before one year later.
If the input is a DateTime Interval, the result is the input.
If the input is a Quantity Interval, the quantities are expected to be calendar-durations interpreted as an Age, and the result
is a DateTime Interval beginning on the date the patient turned the age given as the start of the quantity interval, and ending
immediately before one year later than the date the patient turned the age given as the end of the quantity interval.
Any other input will reslt in a null DateTime Interval
@deprecated: This function is deprecated. Use the fluent function `toInterval()` instead
*/
define function ToInterval(choice Choice<DateTime, Quantity, Interval<DateTime>, Interval<Quantity>>):
  case
	  when choice is DateTime then
    	Interval[choice as DateTime, choice as DateTime]
		when choice is Interval<DateTime> then
  		choice as Interval<DateTime>
		when choice is Quantity then
		  Interval[Patient.birthDate + (choice as Quantity),
			  Patient.birthDate + (choice as Quantity) + 1 year)
		when choice is Interval<Quantity> then
		  Interval[Patient.birthDate + (choice.low as Quantity),
			  Patient.birthDate + (choice.high as Quantity) + 1 year)
		when choice is QICore.Timing then
            null as Interval<DateTime>
		else
			null as Interval<DateTime>
	end

define function "FirstLabTestWithEncounterId"(LabList List<Observation>, CCDE String):
  "Inpatient Encounters" Encounter
    let firstlab: First(LabList Lab
        where Lab.issued is not null
          and Lab.issued during Interval[start of Encounter.period - 1440 minutes, start of Encounter.period + 1440 minutes]
          and Lab.status in { 'final', 'amended', 'preliminary' }
          and Lab.value is not null
        sort by issued
    )
    return '\r\n' & CCDE & ',' & Encounter.id & ',' & ( ToString(firstlab.value as Quantity) ) & ',' & ToString(firstlab.issued)

define function ToString(value uri): value.value

define function ToCode(coding FHIR.Coding):
    if coding is null then
        null
    else
        System.Code {
          code: coding.code.value,
          system: coding.system.value,
          version: coding.version.value,
          display: coding.display.value
        }