dQM CMS Content Implementation Guide
2026.1.0 - CI Build
dQM CMS Content Implementation Guide
2026.1.0 - CI Build
dQM CMS Content Implementation Guide, published by cqframework. This guide is not an authorized publication; it is the continuous build for version 2026.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/cqframework/dqm-content-cms-2026/ and changes regularly. See the Directory of published versions
| Draft as of 2026-07-30 |
<ValueSet xmlns="http://hl7.org/fhir">
<id value="bacteria-and-fungi-hob-specific"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: ValueSet bacteria-and-fungi-hob-specific</b></p><a name="bacteria-and-fungi-hob-specific"> </a><a name="hcbacteria-and-fungi-hob-specific"> </a><p style="border: maroon 1px solid; background-color: #FFCCCC; font-weight: bold; padding: 8px">This value set has 65 codes in it. In order to keep the publication size manageable, only a selection (69 codes) of the whole set of codes is shown.</p><table class="codes"><tr><td><b>System</b></td><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-186087007"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/186087007">186087007</a></td><td>(Cholera) or (Vibrio cholerae)</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-266186009"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/266186009">266186009</a></td><td>(Legionella) or (Legionnaire\'s disease)</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-154315008"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/154315008">154315008</a></td><td>(Legionella) or (Legionnaire\'s disease)</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-186103005"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/186103005">186103005</a></td><td>(Shigella dysenteriae - group A) or (bacillary dysentery)</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-186350009"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/186350009">186350009</a></td><td>(Whooping cough) or (Bordetella)</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-115161005"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/115161005">115161005</a></td><td>Abiotrophia</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-113714003"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/113714003">113714003</a></td><td>Abiotrophia defectiva</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-409815006"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/409815006">409815006</a></td><td>Abiotrophia para-adiacens</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-372391001"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/372391001">372391001</a></td><td>Abiotrophia species</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-736080001"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/736080001">736080001</a></td><td>Abortiporus</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-736079004"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/736079004">736079004</a></td><td>Abortiporus biennis</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-57145009"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/57145009">57145009</a></td><td>Absidia</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-2591000146102"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/2591000146102">2591000146102</a></td><td>Absidia caerulea</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-243420008"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/243420008">243420008</a></td><td>Absidia corymbifera</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-49931000087108"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/49931000087108">49931000087108</a></td><td>Absidia cylindrospora</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-785768009"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/785768009">785768009</a></td><td>Absidia glauca</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-8296004"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/8296004">8296004</a></td><td>Absidia halospora</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-359802007"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/359802007">359802007</a></td><td>Absidia lichtheimii</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-36013002"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/36013002">36013002</a></td><td>Absidia ramosa</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-404226006"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/404226006">404226006</a></td><td>Absidia species</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-541341000124105"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/541341000124105">541341000124105</a></td><td>Abyssicoccus</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-541351000124107"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/541351000124107">541351000124107</a></td><td>Abyssicoccus albus</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-28861000087102"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/28861000087102">28861000087102</a></td><td>Acaromyces</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-28871000087106"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/28871000087106">28871000087106</a></td><td>Acaromyces ingoldii</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-785735002"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/785735002">785735002</a></td><td>Acaulium</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-59520005"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/59520005">59520005</a></td><td>Acaulium acremonium</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-423947001"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/423947001">423947001</a></td><td>Acetanaerobacterium</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-423867006"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/423867006">423867006</a></td><td>Acetanaerobacterium elongatum</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-424162006"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/424162006">424162006</a></td><td>Acetitomaculum</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-425276005"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/425276005">425276005</a></td><td>Acetitomaculum ruminis</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-72806006"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/72806006">72806006</a></td><td>Acetivibrio</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-432614007"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/432614007">432614007</a></td><td>Acetivibrio aldrichii</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-86860008"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/86860008">86860008</a></td><td>Acetivibrio cellulolyticus</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-64755006"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/64755006">64755006</a></td><td>Acetivibrio ethanolgignens</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-131199002"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/131199002">131199002</a></td><td>Acetivibrio species</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-432622000"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/432622000">432622000</a></td><td>Acetivibrio straminisolvens</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-68100006"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/68100006">68100006</a></td><td>Acetivibrio thermocellus</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-423611000"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/423611000">423611000</a></td><td>Acetoanaerobium</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-422656003"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/422656003">422656003</a></td><td>Acetoanaerobium noterae</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-78437006"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/78437006">78437006</a></td><td>Acetoanaerobium sticklandii</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-396949003"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/396949003">396949003</a></td><td>Acetobacter</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-396950003"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/396950003">396950003</a></td><td>Acetobacter aceti</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-413398000"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/413398000">413398000</a></td><td>Acetobacter calcoaceticus</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-413399008"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/413399008">413399008</a></td><td>Acetobacter cerevisiae</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-413400001"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/413400001">413400001</a></td><td>Acetobacter cibinongensis</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-413401002"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/413401002">413401002</a></td><td>Acetobacter estunensis</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-116881000181108"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/116881000181108">116881000181108</a></td><td>Acetobacter fabarum</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-23731000181109"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/23731000181109">23731000181109</a></td><td>Acetobacter ghanensis</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-396953001"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/396953001">396953001</a></td><td>Acetobacter hansenii</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-413402009"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/413402009">413402009</a></td><td>Acetobacter indonesiensis</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-23741000181102"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/23741000181102">23741000181102</a></td><td>Acetobacter lambici</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-396951004"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/396951004">396951004</a></td><td>Acetobacter liquefaciens</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-413403004"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/413403004">413403004</a></td><td>Acetobacter lovaniensis</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-413404005"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/413404005">413404005</a></td><td>Acetobacter malorum</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-23751000181104"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/23751000181104">23751000181104</a></td><td>Acetobacter musti</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-23761000181101"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/23761000181101">23761000181101</a></td><td>Acetobacter nitrogenifigens</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-23771000181106"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/23771000181106">23771000181106</a></td><td>Acetobacter oeni</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-413405006"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/413405006">413405006</a></td><td>Acetobacter orientalis</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-413406007"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/413406007">413406007</a></td><td>Acetobacter orleanensis</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-396952006"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/396952006">396952006</a></td><td>Acetobacter pasteurianus</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-413407003"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/413407003">413407003</a></td><td>Acetobacter peroxydans</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-708522006"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/708522006">708522006</a></td><td>Acetobacter persici</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-413408008"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/413408008">413408008</a></td><td>Acetobacter polyoxogenes</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-413409000"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/413409000">413409000</a></td><td>Acetobacter pomorum</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-413410005"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/413410005">413410005</a></td><td>Acetobacter species</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-3092008"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/3092008">3092008</a></td><td>Staphylococcus aureus</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-44651000087108"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/44651000087108">44651000087108</a></td><td>Staphylococcus aureus complex</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-113961008"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/113961008">113961008</a></td><td>Staphylococcus aureus ss aureus</td></tr><tr><td><a name="bacteria-and-fungi-hob-specific-http://snomed.info/sct-50269000"> </a><code>http://snomed.info/sct</code></td><td style="white-space:nowrap"> <a href="http://snomed.info/id/50269000">50269000</a></td><td>Staphylococcus aureus ss. anaerobius</td></tr></table></div>
</text>
<url
value="https://example.org/fhir/ValueSet/bacteria-and-fungi-hob-specific"/>
<version value="0.1.0"/>
<name value="BacteriaAndFungiHOBSpecific"/>
<title value="Bacteria and Fungi - HOB Specific"/>
<status value="draft"/>
<experimental value="true"/>
<date value="2026-07-30T20:17:17+00:00"/>
<publisher value="CQF (local starter)"/>
<description
value="LOCAL STARTER VALUE SET (not sourced from VSAC). Placeholder for the HOB 'Bacteria and Fungi - HOB Specific' organism value set, which is still 'TBD' in HOB.cql. Derived from the HOBOrganismTaxonomy table: all organisms not flagged nhsn_skin_commensal. NOTE the taxonomy table is itself a work in progress (currently an alphabetical fragment), so this expansion is incomplete and intended only to exercise the HOB numerator logic locally. Replace with the authoritative expansion once published."/>
<compose>
<include>
<system value="http://snomed.info/sct"/>
<concept>
<code value="186087007"/>
<display value="(Cholera) or (Vibrio cholerae)"/>
</concept>
<concept>
<code value="266186009"/>
<display value="(Legionella) or (Legionnaire\'s disease)"/>
</concept>
<concept>
<code value="154315008"/>
<display value="(Legionella) or (Legionnaire\'s disease)"/>
</concept>
<concept>
<code value="186103005"/>
<display
value="(Shigella dysenteriae - group A) or (bacillary dysentery)"/>
</concept>
<concept>
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