dQM CMS Content Implementation Guide
2026.1.0 - CI Build

dQM CMS Content Implementation Guide, published by cqframework. This guide is not an authorized publication; it is the continuous build for version 2026.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/cqframework/dqm-content-cms-2026/ and changes regularly. See the Directory of published versions

ValueSet: Bacteria and Fungi - HOB Specific (Experimental)

Official URL: https://example.org/fhir/ValueSet/bacteria-and-fungi-hob-specific Version: 0.1.0
Draft as of 2026-07-30 Responsible: CQF (local starter) Computable Name: BacteriaAndFungiHOBSpecific

LOCAL STARTER VALUE SET (not sourced from VSAC). Placeholder for the HOB ‘Bacteria and Fungi - HOB Specific’ organism value set, which is still ‘TBD’ in HOB.cql. Derived from the HOBOrganismTaxonomy table: all organisms not flagged nhsn_skin_commensal. NOTE the taxonomy table is itself a work in progress (currently an alphabetical fragment), so this expansion is incomplete and intended only to exercise the HOB numerator logic locally. Replace with the authoritative expansion once published.

References

This value set is not used here; it may be used elsewhere (e.g. specifications and/or implementations that use this content)

Logical Definition (CLD)

 

Expansion

This value set has 65 codes in it. In order to keep the publication size manageable, only a selection (69 codes) of the whole set of codes is shown.

SystemCodeDisplayJSONXML
http://snomed.info/sct  186087007(Cholera) or (Vibrio cholerae)
http://snomed.info/sct  266186009(Legionella) or (Legionnaire\'s disease)
http://snomed.info/sct  154315008(Legionella) or (Legionnaire\'s disease)
http://snomed.info/sct  186103005(Shigella dysenteriae - group A) or (bacillary dysentery)
http://snomed.info/sct  186350009(Whooping cough) or (Bordetella)
http://snomed.info/sct  115161005Abiotrophia
http://snomed.info/sct  113714003Abiotrophia defectiva
http://snomed.info/sct  409815006Abiotrophia para-adiacens
http://snomed.info/sct  372391001Abiotrophia species
http://snomed.info/sct  736080001Abortiporus
http://snomed.info/sct  736079004Abortiporus biennis
http://snomed.info/sct  57145009Absidia
http://snomed.info/sct  2591000146102Absidia caerulea
http://snomed.info/sct  243420008Absidia corymbifera
http://snomed.info/sct  49931000087108Absidia cylindrospora
http://snomed.info/sct  785768009Absidia glauca
http://snomed.info/sct  8296004Absidia halospora
http://snomed.info/sct  359802007Absidia lichtheimii
http://snomed.info/sct  36013002Absidia ramosa
http://snomed.info/sct  404226006Absidia species
http://snomed.info/sct  541341000124105Abyssicoccus
http://snomed.info/sct  541351000124107Abyssicoccus albus
http://snomed.info/sct  28861000087102Acaromyces
http://snomed.info/sct  28871000087106Acaromyces ingoldii
http://snomed.info/sct  785735002Acaulium
http://snomed.info/sct  59520005Acaulium acremonium
http://snomed.info/sct  423947001Acetanaerobacterium
http://snomed.info/sct  423867006Acetanaerobacterium elongatum
http://snomed.info/sct  424162006Acetitomaculum
http://snomed.info/sct  425276005Acetitomaculum ruminis
http://snomed.info/sct  72806006Acetivibrio
http://snomed.info/sct  432614007Acetivibrio aldrichii
http://snomed.info/sct  86860008Acetivibrio cellulolyticus
http://snomed.info/sct  64755006Acetivibrio ethanolgignens
http://snomed.info/sct  131199002Acetivibrio species
http://snomed.info/sct  432622000Acetivibrio straminisolvens
http://snomed.info/sct  68100006Acetivibrio thermocellus
http://snomed.info/sct  423611000Acetoanaerobium
http://snomed.info/sct  422656003Acetoanaerobium noterae
http://snomed.info/sct  78437006Acetoanaerobium sticklandii
http://snomed.info/sct  396949003Acetobacter
http://snomed.info/sct  396950003Acetobacter aceti
http://snomed.info/sct  413398000Acetobacter calcoaceticus
http://snomed.info/sct  413399008Acetobacter cerevisiae
http://snomed.info/sct  413400001Acetobacter cibinongensis
http://snomed.info/sct  413401002Acetobacter estunensis
http://snomed.info/sct  116881000181108Acetobacter fabarum
http://snomed.info/sct  23731000181109Acetobacter ghanensis
http://snomed.info/sct  396953001Acetobacter hansenii
http://snomed.info/sct  413402009Acetobacter indonesiensis
http://snomed.info/sct  23741000181102Acetobacter lambici
http://snomed.info/sct  396951004Acetobacter liquefaciens
http://snomed.info/sct  413403004Acetobacter lovaniensis
http://snomed.info/sct  413404005Acetobacter malorum
http://snomed.info/sct  23751000181104Acetobacter musti
http://snomed.info/sct  23761000181101Acetobacter nitrogenifigens
http://snomed.info/sct  23771000181106Acetobacter oeni
http://snomed.info/sct  413405006Acetobacter orientalis
http://snomed.info/sct  413406007Acetobacter orleanensis
http://snomed.info/sct  396952006Acetobacter pasteurianus
http://snomed.info/sct  413407003Acetobacter peroxydans
http://snomed.info/sct  708522006Acetobacter persici
http://snomed.info/sct  413408008Acetobacter polyoxogenes
http://snomed.info/sct  413409000Acetobacter pomorum
http://snomed.info/sct  413410005Acetobacter species
http://snomed.info/sct  3092008Staphylococcus aureus
http://snomed.info/sct  44651000087108Staphylococcus aureus complex
http://snomed.info/sct  113961008Staphylococcus aureus ss aureus
http://snomed.info/sct  50269000Staphylococcus aureus ss. anaerobius

Explanation of the columns that may appear on this page:

Level A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies
System The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance)
Display The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code