dQM CMS Content Implementation Guide
2026.1.0 - CI Build
dQM CMS Content Implementation Guide
2026.1.0 - CI Build
dQM CMS Content Implementation Guide, published by cqframework. This guide is not an authorized publication; it is the continuous build for version 2026.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/cqframework/dqm-content-cms-2026/ and changes regularly. See the Directory of published versions
| Draft as of 2026-07-30 |
<CodeSystem xmlns="http://hl7.org/fhir">
<id value="hob-organism-taxonomy"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: CodeSystem hob-organism-taxonomy</b></p><a name="hob-organism-taxonomy"> </a><a name="hchob-organism-taxonomy"> </a><p><b>Properties</b></p><p><b>This code system defines the following properties for its concepts</b></p><table class="grid"><tr><td><b>Name</b></td><td><b>Code</b></td><td><b>Type</b></td><td><b>Description</b></td></tr><tr><td>roll-up-genus</td><td>roll-up-genus</td><td>Coding</td><td>Genus-level SNOMED CT concept this organism rolls up to (roll_up_genus_conceptid / roll_up_genus_name).</td></tr><tr><td>roll-up-species</td><td>roll-up-species</td><td>Coding</td><td>Species-level SNOMED CT concept this organism rolls up to (roll_up_species_conceptid / roll_up_species_name). Absent for genus-level or higher concepts.</td></tr><tr><td>nhsn-community-associated</td><td>nhsn-community-associated</td><td>boolean</td><td>NHSN classification: organism is community-associated (source nhsn_community_associated, 1=true).</td></tr><tr><td>nhsn-skin-commensal</td><td>nhsn-skin-commensal</td><td>boolean</td><td>NHSN classification: organism is a common skin commensal (source nhsn_skin_commensal, 1=true).</td></tr><tr><td>snomed-status</td><td>snomed-status</td><td>code</td><td>SNOMED status flag as recorded in the source taxonomy ('0'/'1'). Exact semantics to be confirmed (likely active=1).</td></tr></table><p><b>Concepts</b></p><p>This code system supplement <code>https://example.org/fhir/CodeSystem/hob-organism-taxonomy</code> defines properties on the following codes:</p><table class="codes"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td><td><b>roll-up-genus</b></td><td><b>roll-up-species</b></td><td><b>nhsn-community-associated</b></td><td><b>nhsn-skin-commensal</b></td><td><b>snomed-status</b></td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/186087007">186087007</a><a name="hob-organism-taxonomy-186087007"> </a></td><td>(Cholera) or (Vibrio cholerae)</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 34872001}">Vibrio</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 75953000}">Vibrio cholerae</a></td><td>false</td><td>false</td><td>0</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/266186009">266186009</a><a name="hob-organism-taxonomy-266186009"> </a></td><td>(Legionella) or (Legionnaire's disease)</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 7527002}">Legionella</a></td><td/><td>false</td><td>false</td><td>0</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/154315008">154315008</a><a name="hob-organism-taxonomy-154315008"> </a></td><td>(Legionella) or (Legionnaire's disease)</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 7527002}">Legionella</a></td><td/><td>false</td><td>false</td><td>0</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/186103005">186103005</a><a name="hob-organism-taxonomy-186103005"> </a></td><td>(Shigella dysenteriae - group A) or (bacillary dysentery)</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 77352002}">Shigella</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 43612004}">Shigella dysenteriae</a></td><td>false</td><td>false</td><td>0</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/186350009">186350009</a><a name="hob-organism-taxonomy-186350009"> </a></td><td>(Whooping cough) or (Bordetella)</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 46466005}">Bordetella</a></td><td/><td>false</td><td>false</td><td>0</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/115161005">115161005</a><a name="hob-organism-taxonomy-115161005"> </a></td><td>Abiotrophia</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 115161005}">Abiotrophia</a></td><td/><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/113714003">113714003</a><a name="hob-organism-taxonomy-113714003"> </a></td><td>Abiotrophia defectiva</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 115161005}">Abiotrophia</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 113714003}">Abiotrophia defectiva</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/409815006">409815006</a><a name="hob-organism-taxonomy-409815006"> </a></td><td>Abiotrophia para-adiacens</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 115161005}">Abiotrophia</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 409815006}">Abiotrophia para-adiacens</a></td><td>false</td><td>false</td><td>0</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/372391001">372391001</a><a name="hob-organism-taxonomy-372391001"> </a></td><td>Abiotrophia species</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 115161005}">Abiotrophia</a></td><td/><td>false</td><td>false</td><td>0</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/736080001">736080001</a><a name="hob-organism-taxonomy-736080001"> </a></td><td>Abortiporus</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 736080001}">Abortiporus</a></td><td/><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/736079004">736079004</a><a name="hob-organism-taxonomy-736079004"> </a></td><td>Abortiporus biennis</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 736080001}">Abortiporus</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 736079004}">Abortiporus biennis</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/57145009">57145009</a><a name="hob-organism-taxonomy-57145009"> </a></td><td>Absidia</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 57145009}">Absidia</a></td><td/><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/2591000146102">2591000146102</a><a name="hob-organism-taxonomy-2591000146102"> </a></td><td>Absidia caerulea</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 57145009}">Absidia</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 2591000146102}">Absidia caerulea</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/243420008">243420008</a><a name="hob-organism-taxonomy-243420008"> </a></td><td>Absidia corymbifera</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 57145009}">Absidia</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 243420008}">Absidia corymbifera</a></td><td>false</td><td>false</td><td>0</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/49931000087108">49931000087108</a><a name="hob-organism-taxonomy-49931000087108"> </a></td><td>Absidia cylindrospora</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 57145009}">Absidia</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 49931000087108}">Absidia cylindrospora</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/785768009">785768009</a><a name="hob-organism-taxonomy-785768009"> </a></td><td>Absidia glauca</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 57145009}">Absidia</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 785768009}">Absidia glauca</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/8296004">8296004</a><a name="hob-organism-taxonomy-8296004"> </a></td><td>Absidia halospora</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 57145009}">Absidia</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 8296004}">Absidia halospora</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/359802007">359802007</a><a name="hob-organism-taxonomy-359802007"> </a></td><td>Absidia lichtheimii</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 57145009}">Absidia</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 359802007}">Absidia lichtheimii</a></td><td>false</td><td>false</td><td>0</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/36013002">36013002</a><a name="hob-organism-taxonomy-36013002"> </a></td><td>Absidia ramosa</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 57145009}">Absidia</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 36013002}">Absidia ramosa</a></td><td>false</td><td>false</td><td>0</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/404226006">404226006</a><a name="hob-organism-taxonomy-404226006"> </a></td><td>Absidia species</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 57145009}">Absidia</a></td><td/><td>false</td><td>false</td><td>0</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/541341000124105">541341000124105</a><a name="hob-organism-taxonomy-541341000124105"> </a></td><td>Abyssicoccus</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 541341000124105}">Abyssicoccus</a></td><td/><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/541351000124107">541351000124107</a><a name="hob-organism-taxonomy-541351000124107"> </a></td><td>Abyssicoccus albus</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 541341000124105}">Abyssicoccus</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 541351000124107}">Abyssicoccus albus</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/28861000087102">28861000087102</a><a name="hob-organism-taxonomy-28861000087102"> </a></td><td>Acaromyces</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 28861000087102}">Acaromyces</a></td><td/><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/28871000087106">28871000087106</a><a name="hob-organism-taxonomy-28871000087106"> </a></td><td>Acaromyces ingoldii</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 28861000087102}">Acaromyces</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 28871000087106}">Acaromyces ingoldii</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/785735002">785735002</a><a name="hob-organism-taxonomy-785735002"> </a></td><td>Acaulium</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 785735002}">Acaulium</a></td><td/><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/59520005">59520005</a><a name="hob-organism-taxonomy-59520005"> </a></td><td>Acaulium acremonium</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 785735002}">Acaulium</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 59520005}">Acaulium acremonium</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/423947001">423947001</a><a name="hob-organism-taxonomy-423947001"> </a></td><td>Acetanaerobacterium</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 423947001}">Acetanaerobacterium</a></td><td/><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/423867006">423867006</a><a name="hob-organism-taxonomy-423867006"> </a></td><td>Acetanaerobacterium elongatum</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 423947001}">Acetanaerobacterium</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 423867006}">Acetanaerobacterium elongatum</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/424162006">424162006</a><a name="hob-organism-taxonomy-424162006"> </a></td><td>Acetitomaculum</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 424162006}">Acetitomaculum</a></td><td/><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/425276005">425276005</a><a name="hob-organism-taxonomy-425276005"> </a></td><td>Acetitomaculum ruminis</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 424162006}">Acetitomaculum</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 425276005}">Acetitomaculum ruminis</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/72806006">72806006</a><a name="hob-organism-taxonomy-72806006"> </a></td><td>Acetivibrio</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 72806006}">Acetivibrio</a></td><td/><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/432614007">432614007</a><a name="hob-organism-taxonomy-432614007"> </a></td><td>Acetivibrio aldrichii</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 72806006}">Acetivibrio</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 432614007}">Acetivibrio aldrichii</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/86860008">86860008</a><a name="hob-organism-taxonomy-86860008"> </a></td><td>Acetivibrio cellulolyticus</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 72806006}">Acetivibrio</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 86860008}">Acetivibrio cellulolyticus</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/64755006">64755006</a><a name="hob-organism-taxonomy-64755006"> </a></td><td>Acetivibrio ethanolgignens</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 72806006}">Acetivibrio</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 64755006}">Acetivibrio ethanolgignens</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/131199002">131199002</a><a name="hob-organism-taxonomy-131199002"> </a></td><td>Acetivibrio species</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 72806006}">Acetivibrio</a></td><td/><td>false</td><td>false</td><td>0</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/432622000">432622000</a><a name="hob-organism-taxonomy-432622000"> </a></td><td>Acetivibrio straminisolvens</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 72806006}">Acetivibrio</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 432622000}">Acetivibrio straminisolvens</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/68100006">68100006</a><a name="hob-organism-taxonomy-68100006"> </a></td><td>Acetivibrio thermocellus</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 72806006}">Acetivibrio</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 68100006}">Acetivibrio thermocellus</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/423611000">423611000</a><a name="hob-organism-taxonomy-423611000"> </a></td><td>Acetoanaerobium</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 423611000}">Acetoanaerobium</a></td><td/><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/422656003">422656003</a><a name="hob-organism-taxonomy-422656003"> </a></td><td>Acetoanaerobium noterae</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 423611000}">Acetoanaerobium</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 422656003}">Acetoanaerobium noterae</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/78437006">78437006</a><a name="hob-organism-taxonomy-78437006"> </a></td><td>Acetoanaerobium sticklandii</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 423611000}">Acetoanaerobium</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 78437006}">Acetoanaerobium sticklandii</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/396949003">396949003</a><a name="hob-organism-taxonomy-396949003"> </a></td><td>Acetobacter</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td/><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/396950003">396950003</a><a name="hob-organism-taxonomy-396950003"> </a></td><td>Acetobacter aceti</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396950003}">Acetobacter aceti</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/413398000">413398000</a><a name="hob-organism-taxonomy-413398000"> </a></td><td>Acetobacter calcoaceticus</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 413398000}">Acetobacter calcoaceticus</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/413399008">413399008</a><a name="hob-organism-taxonomy-413399008"> </a></td><td>Acetobacter cerevisiae</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 413399008}">Acetobacter cerevisiae</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/413400001">413400001</a><a name="hob-organism-taxonomy-413400001"> </a></td><td>Acetobacter cibinongensis</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 413400001}">Acetobacter cibinongensis</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/413401002">413401002</a><a name="hob-organism-taxonomy-413401002"> </a></td><td>Acetobacter estunensis</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 413401002}">Acetobacter estunensis</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/116881000181108">116881000181108</a><a name="hob-organism-taxonomy-116881000181108"> </a></td><td>Acetobacter fabarum</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 116881000181108}">Acetobacter fabarum</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/23731000181109">23731000181109</a><a name="hob-organism-taxonomy-23731000181109"> </a></td><td>Acetobacter ghanensis</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 23731000181109}">Acetobacter ghanensis</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/396953001">396953001</a><a name="hob-organism-taxonomy-396953001"> </a></td><td>Acetobacter hansenii</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396953001}">Acetobacter hansenii</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/413402009">413402009</a><a name="hob-organism-taxonomy-413402009"> </a></td><td>Acetobacter indonesiensis</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 413402009}">Acetobacter indonesiensis</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/23741000181102">23741000181102</a><a name="hob-organism-taxonomy-23741000181102"> </a></td><td>Acetobacter lambici</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 23741000181102}">Acetobacter lambici</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/396951004">396951004</a><a name="hob-organism-taxonomy-396951004"> </a></td><td>Acetobacter liquefaciens</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396951004}">Acetobacter liquefaciens</a></td><td>false</td><td>false</td><td>0</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/413403004">413403004</a><a name="hob-organism-taxonomy-413403004"> </a></td><td>Acetobacter lovaniensis</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 413403004}">Acetobacter lovaniensis</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/413404005">413404005</a><a name="hob-organism-taxonomy-413404005"> </a></td><td>Acetobacter malorum</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 413404005}">Acetobacter malorum</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/23751000181104">23751000181104</a><a name="hob-organism-taxonomy-23751000181104"> </a></td><td>Acetobacter musti</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 23751000181104}">Acetobacter musti</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/23761000181101">23761000181101</a><a name="hob-organism-taxonomy-23761000181101"> </a></td><td>Acetobacter nitrogenifigens</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 23761000181101}">Acetobacter nitrogenifigens</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/23771000181106">23771000181106</a><a name="hob-organism-taxonomy-23771000181106"> </a></td><td>Acetobacter oeni</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 23771000181106}">Acetobacter oeni</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/413405006">413405006</a><a name="hob-organism-taxonomy-413405006"> </a></td><td>Acetobacter orientalis</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 413405006}">Acetobacter orientalis</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/413406007">413406007</a><a name="hob-organism-taxonomy-413406007"> </a></td><td>Acetobacter orleanensis</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 413406007}">Acetobacter orleanensis</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/396952006">396952006</a><a name="hob-organism-taxonomy-396952006"> </a></td><td>Acetobacter pasteurianus</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396952006}">Acetobacter pasteurianus</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/413407003">413407003</a><a name="hob-organism-taxonomy-413407003"> </a></td><td>Acetobacter peroxydans</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 413407003}">Acetobacter peroxydans</a></td><td>false</td><td>false</td><td>0</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/708522006">708522006</a><a name="hob-organism-taxonomy-708522006"> </a></td><td>Acetobacter persici</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 708522006}">Acetobacter persici</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/413408008">413408008</a><a name="hob-organism-taxonomy-413408008"> </a></td><td>Acetobacter polyoxogenes</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 413408008}">Acetobacter polyoxogenes</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/413409000">413409000</a><a name="hob-organism-taxonomy-413409000"> </a></td><td>Acetobacter pomorum</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 413409000}">Acetobacter pomorum</a></td><td>false</td><td>false</td><td>1</td></tr><tr><td><a style="white-space:nowrap" href="http://snomed.info/id/413410005">413410005</a><a name="hob-organism-taxonomy-413410005"> </a></td><td>Acetobacter species</td><td><a href="http://hl7.org/fhir/R4/codesystem-snomedct.html" title="{http://snomed.info/sct 396949003}">Acetobacter</a></td><td/><td>false</td><td>false</td><td>0</td></tr></table></div>
</text>
<url value="https://example.org/fhir/CodeSystem/hob-organism-taxonomy"/>
<version value="0.1.0"/>
<name value="HOBOrganismTaxonomy"/>
<title value="HOB Organism Taxonomy - SNOMED CT Supplement"/>
<status value="draft"/>
<experimental value="true"/>
<date value="2026-07-30T20:17:17+00:00"/>
<publisher value="CQF (local starter)"/>
<description
value="SNOMED CT code system supplement carrying the NHSN HOB organism-taxonomy rollup and classification properties. Generated from the OrganismTaxonomy expression in the HOBOrganismTaxonomy CQL library (the source is a work-in-progress alphabetical fragment, so this supplement is incomplete). The source columns roll_up_genus_level / roll_up_species_level are omitted because they are fully implied by the presence of the roll-up-genus / roll-up-species properties, and the always-null 'L' column is omitted. Genus/species preferred terms are carried as the display of each Coding-valued property."/>
<content value="supplement"/>
<supplements value="http://snomed.info/sct"/>
<count value="65"/>
<property>
<code value="roll-up-genus"/>
<description
value="Genus-level SNOMED CT concept this organism rolls up to (roll_up_genus_conceptid / roll_up_genus_name)."/>
<type value="Coding"/>
</property>
<property>
<code value="roll-up-species"/>
<description
value="Species-level SNOMED CT concept this organism rolls up to (roll_up_species_conceptid / roll_up_species_name). Absent for genus-level or higher concepts."/>
<type value="Coding"/>
</property>
<property>
<code value="nhsn-community-associated"/>
<description
value="NHSN classification: organism is community-associated (source nhsn_community_associated, 1=true)."/>
<type value="boolean"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<description
value="NHSN classification: organism is a common skin commensal (source nhsn_skin_commensal, 1=true)."/>
<type value="boolean"/>
</property>
<property>
<code value="snomed-status"/>
<description
value="SNOMED status flag as recorded in the source taxonomy ('0'/'1'). Exact semantics to be confirmed (likely active=1)."/>
<type value="code"/>
</property>
<concept>
<code value="186087007"/>
<display value="(Cholera) or (Vibrio cholerae)"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="34872001"/>
<display value="Vibrio"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="75953000"/>
<display value="Vibrio cholerae"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="0"/>
</property>
</concept>
<concept>
<code value="266186009"/>
<display value="(Legionella) or (Legionnaire's disease)"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="7527002"/>
<display value="Legionella"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="0"/>
</property>
</concept>
<concept>
<code value="154315008"/>
<display value="(Legionella) or (Legionnaire's disease)"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="7527002"/>
<display value="Legionella"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="0"/>
</property>
</concept>
<concept>
<code value="186103005"/>
<display
value="(Shigella dysenteriae - group A) or (bacillary dysentery)"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="77352002"/>
<display value="Shigella"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="43612004"/>
<display value="Shigella dysenteriae"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="0"/>
</property>
</concept>
<concept>
<code value="186350009"/>
<display value="(Whooping cough) or (Bordetella)"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="46466005"/>
<display value="Bordetella"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="0"/>
</property>
</concept>
<concept>
<code value="115161005"/>
<display value="Abiotrophia"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="115161005"/>
<display value="Abiotrophia"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="113714003"/>
<display value="Abiotrophia defectiva"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="115161005"/>
<display value="Abiotrophia"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="113714003"/>
<display value="Abiotrophia defectiva"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="409815006"/>
<display value="Abiotrophia para-adiacens"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="115161005"/>
<display value="Abiotrophia"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
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<code value="nhsn-skin-commensal"/>
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<property>
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<concept>
<code value="372391001"/>
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<system value="http://snomed.info/sct"/>
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<property>
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<property>
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<concept>
<code value="736080001"/>
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<property>
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<property>
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<concept>
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<property>
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<concept>
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<property>
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<concept>
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<concept>
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<concept>
<code value="49931000087108"/>
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<property>
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<concept>
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<system value="http://snomed.info/sct"/>
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<property>
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<concept>
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<concept>
<code value="359802007"/>
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<system value="http://snomed.info/sct"/>
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<concept>
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<property>
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<concept>
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<property>
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<concept>
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<system value="http://snomed.info/sct"/>
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<concept>
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<property>
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<concept>
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<property>
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<property>
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<property>
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<property>
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<property>
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<system value="http://snomed.info/sct"/>
<code value="78437006"/>
<display value="Acetoanaerobium sticklandii"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="396949003"/>
<display value="Acetobacter"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="396950003"/>
<display value="Acetobacter aceti"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396950003"/>
<display value="Acetobacter aceti"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="413398000"/>
<display value="Acetobacter calcoaceticus"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="413398000"/>
<display value="Acetobacter calcoaceticus"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="413399008"/>
<display value="Acetobacter cerevisiae"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="413399008"/>
<display value="Acetobacter cerevisiae"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="413400001"/>
<display value="Acetobacter cibinongensis"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="413400001"/>
<display value="Acetobacter cibinongensis"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="413401002"/>
<display value="Acetobacter estunensis"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="413401002"/>
<display value="Acetobacter estunensis"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="116881000181108"/>
<display value="Acetobacter fabarum"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="116881000181108"/>
<display value="Acetobacter fabarum"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="23731000181109"/>
<display value="Acetobacter ghanensis"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="23731000181109"/>
<display value="Acetobacter ghanensis"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="396953001"/>
<display value="Acetobacter hansenii"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396953001"/>
<display value="Acetobacter hansenii"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="413402009"/>
<display value="Acetobacter indonesiensis"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="413402009"/>
<display value="Acetobacter indonesiensis"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="23741000181102"/>
<display value="Acetobacter lambici"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="23741000181102"/>
<display value="Acetobacter lambici"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="396951004"/>
<display value="Acetobacter liquefaciens"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396951004"/>
<display value="Acetobacter liquefaciens"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="0"/>
</property>
</concept>
<concept>
<code value="413403004"/>
<display value="Acetobacter lovaniensis"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="413403004"/>
<display value="Acetobacter lovaniensis"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="413404005"/>
<display value="Acetobacter malorum"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="413404005"/>
<display value="Acetobacter malorum"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="23751000181104"/>
<display value="Acetobacter musti"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="23751000181104"/>
<display value="Acetobacter musti"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="23761000181101"/>
<display value="Acetobacter nitrogenifigens"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="23761000181101"/>
<display value="Acetobacter nitrogenifigens"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="23771000181106"/>
<display value="Acetobacter oeni"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="23771000181106"/>
<display value="Acetobacter oeni"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="413405006"/>
<display value="Acetobacter orientalis"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="413405006"/>
<display value="Acetobacter orientalis"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="413406007"/>
<display value="Acetobacter orleanensis"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="413406007"/>
<display value="Acetobacter orleanensis"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="396952006"/>
<display value="Acetobacter pasteurianus"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396952006"/>
<display value="Acetobacter pasteurianus"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="413407003"/>
<display value="Acetobacter peroxydans"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="413407003"/>
<display value="Acetobacter peroxydans"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="0"/>
</property>
</concept>
<concept>
<code value="708522006"/>
<display value="Acetobacter persici"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="708522006"/>
<display value="Acetobacter persici"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="413408008"/>
<display value="Acetobacter polyoxogenes"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="413408008"/>
<display value="Acetobacter polyoxogenes"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="413409000"/>
<display value="Acetobacter pomorum"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="roll-up-species"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="413409000"/>
<display value="Acetobacter pomorum"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="1"/>
</property>
</concept>
<concept>
<code value="413410005"/>
<display value="Acetobacter species"/>
<property>
<code value="roll-up-genus"/>
<valueCoding>
<system value="http://snomed.info/sct"/>
<code value="396949003"/>
<display value="Acetobacter"/>
</valueCoding>
</property>
<property>
<code value="nhsn-community-associated"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="nhsn-skin-commensal"/>
<valueBoolean value="false"/>
</property>
<property>
<code value="snomed-status"/>
<valueCode value="0"/>
</property>
</concept>
</CodeSystem>