dQM CMS Content Implementation Guide
2026.1.0 - CI Build
dQM CMS Content Implementation Guide, published by cqframework. This guide is not an authorized publication; it is the continuous build for version 2026.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/cqframework/dqm-content-cms-2026/ and changes regularly. See the Directory of published versions
| Official URL: https://example.org/fhir/CodeSystem/hob-organism-taxonomy | Version: 0.1.0 | |||
| Draft as of 2026-07-30 | Responsible: CQF (local starter) | Computable Name: HOBOrganismTaxonomy | ||
SNOMED CT code system supplement carrying the NHSN HOB organism-taxonomy rollup and classification properties. Generated from the OrganismTaxonomy expression in the HOBOrganismTaxonomy CQL library (the source is a work-in-progress alphabetical fragment, so this supplement is incomplete). The source columns roll_up_genus_level / roll_up_species_level are omitted because they are fully implied by the presence of the roll-up-genus / roll-up-species properties, and the always-null āLā column is omitted. Genus/species preferred terms are carried as the display of each Coding-valued property.
This Code system is referenced in the content logical definition of the following value sets:
Properties
This code system defines the following properties for its concepts
| Name | Code | Type | Description |
| roll-up-genus | roll-up-genus | Coding | Genus-level SNOMED CT concept this organism rolls up to (roll_up_genus_conceptid / roll_up_genus_name). |
| roll-up-species | roll-up-species | Coding | Species-level SNOMED CT concept this organism rolls up to (roll_up_species_conceptid / roll_up_species_name). Absent for genus-level or higher concepts. |
| nhsn-community-associated | nhsn-community-associated | boolean | NHSN classification: organism is community-associated (source nhsn_community_associated, 1=true). |
| nhsn-skin-commensal | nhsn-skin-commensal | boolean | NHSN classification: organism is a common skin commensal (source nhsn_skin_commensal, 1=true). |
| snomed-status | snomed-status | code | SNOMED status flag as recorded in the source taxonomy ('0'/'1'). Exact semantics to be confirmed (likely active=1). |
Concepts
This code system supplement https://example.org/fhir/CodeSystem/hob-organism-taxonomy defines properties on the following codes:
| Code | Display | roll-up-genus | roll-up-species | nhsn-community-associated | nhsn-skin-commensal | snomed-status |
| 186087007 | (Cholera) or (Vibrio cholerae) | Vibrio | Vibrio cholerae | false | false | 0 |
| 266186009 | (Legionella) or (Legionnaire's disease) | Legionella | false | false | 0 | |
| 154315008 | (Legionella) or (Legionnaire's disease) | Legionella | false | false | 0 | |
| 186103005 | (Shigella dysenteriae - group A) or (bacillary dysentery) | Shigella | Shigella dysenteriae | false | false | 0 |
| 186350009 | (Whooping cough) or (Bordetella) | Bordetella | false | false | 0 | |
| 115161005 | Abiotrophia | Abiotrophia | false | false | 1 | |
| 113714003 | Abiotrophia defectiva | Abiotrophia | Abiotrophia defectiva | false | false | 1 |
| 409815006 | Abiotrophia para-adiacens | Abiotrophia | Abiotrophia para-adiacens | false | false | 0 |
| 372391001 | Abiotrophia species | Abiotrophia | false | false | 0 | |
| 736080001 | Abortiporus | Abortiporus | false | false | 1 | |
| 736079004 | Abortiporus biennis | Abortiporus | Abortiporus biennis | false | false | 1 |
| 57145009 | Absidia | Absidia | false | false | 1 | |
| 2591000146102 | Absidia caerulea | Absidia | Absidia caerulea | false | false | 1 |
| 243420008 | Absidia corymbifera | Absidia | Absidia corymbifera | false | false | 0 |
| 49931000087108 | Absidia cylindrospora | Absidia | Absidia cylindrospora | false | false | 1 |
| 785768009 | Absidia glauca | Absidia | Absidia glauca | false | false | 1 |
| 8296004 | Absidia halospora | Absidia | Absidia halospora | false | false | 1 |
| 359802007 | Absidia lichtheimii | Absidia | Absidia lichtheimii | false | false | 0 |
| 36013002 | Absidia ramosa | Absidia | Absidia ramosa | false | false | 0 |
| 404226006 | Absidia species | Absidia | false | false | 0 | |
| 541341000124105 | Abyssicoccus | Abyssicoccus | false | false | 1 | |
| 541351000124107 | Abyssicoccus albus | Abyssicoccus | Abyssicoccus albus | false | false | 1 |
| 28861000087102 | Acaromyces | Acaromyces | false | false | 1 | |
| 28871000087106 | Acaromyces ingoldii | Acaromyces | Acaromyces ingoldii | false | false | 1 |
| 785735002 | Acaulium | Acaulium | false | false | 1 | |
| 59520005 | Acaulium acremonium | Acaulium | Acaulium acremonium | false | false | 1 |
| 423947001 | Acetanaerobacterium | Acetanaerobacterium | false | false | 1 | |
| 423867006 | Acetanaerobacterium elongatum | Acetanaerobacterium | Acetanaerobacterium elongatum | false | false | 1 |
| 424162006 | Acetitomaculum | Acetitomaculum | false | false | 1 | |
| 425276005 | Acetitomaculum ruminis | Acetitomaculum | Acetitomaculum ruminis | false | false | 1 |
| 72806006 | Acetivibrio | Acetivibrio | false | false | 1 | |
| 432614007 | Acetivibrio aldrichii | Acetivibrio | Acetivibrio aldrichii | false | false | 1 |
| 86860008 | Acetivibrio cellulolyticus | Acetivibrio | Acetivibrio cellulolyticus | false | false | 1 |
| 64755006 | Acetivibrio ethanolgignens | Acetivibrio | Acetivibrio ethanolgignens | false | false | 1 |
| 131199002 | Acetivibrio species | Acetivibrio | false | false | 0 | |
| 432622000 | Acetivibrio straminisolvens | Acetivibrio | Acetivibrio straminisolvens | false | false | 1 |
| 68100006 | Acetivibrio thermocellus | Acetivibrio | Acetivibrio thermocellus | false | false | 1 |
| 423611000 | Acetoanaerobium | Acetoanaerobium | false | false | 1 | |
| 422656003 | Acetoanaerobium noterae | Acetoanaerobium | Acetoanaerobium noterae | false | false | 1 |
| 78437006 | Acetoanaerobium sticklandii | Acetoanaerobium | Acetoanaerobium sticklandii | false | false | 1 |
| 396949003 | Acetobacter | Acetobacter | false | false | 1 | |
| 396950003 | Acetobacter aceti | Acetobacter | Acetobacter aceti | false | false | 1 |
| 413398000 | Acetobacter calcoaceticus | Acetobacter | Acetobacter calcoaceticus | false | false | 1 |
| 413399008 | Acetobacter cerevisiae | Acetobacter | Acetobacter cerevisiae | false | false | 1 |
| 413400001 | Acetobacter cibinongensis | Acetobacter | Acetobacter cibinongensis | false | false | 1 |
| 413401002 | Acetobacter estunensis | Acetobacter | Acetobacter estunensis | false | false | 1 |
| 116881000181108 | Acetobacter fabarum | Acetobacter | Acetobacter fabarum | false | false | 1 |
| 23731000181109 | Acetobacter ghanensis | Acetobacter | Acetobacter ghanensis | false | false | 1 |
| 396953001 | Acetobacter hansenii | Acetobacter | Acetobacter hansenii | false | false | 1 |
| 413402009 | Acetobacter indonesiensis | Acetobacter | Acetobacter indonesiensis | false | false | 1 |
| 23741000181102 | Acetobacter lambici | Acetobacter | Acetobacter lambici | false | false | 1 |
| 396951004 | Acetobacter liquefaciens | Acetobacter | Acetobacter liquefaciens | false | false | 0 |
| 413403004 | Acetobacter lovaniensis | Acetobacter | Acetobacter lovaniensis | false | false | 1 |
| 413404005 | Acetobacter malorum | Acetobacter | Acetobacter malorum | false | false | 1 |
| 23751000181104 | Acetobacter musti | Acetobacter | Acetobacter musti | false | false | 1 |
| 23761000181101 | Acetobacter nitrogenifigens | Acetobacter | Acetobacter nitrogenifigens | false | false | 1 |
| 23771000181106 | Acetobacter oeni | Acetobacter | Acetobacter oeni | false | false | 1 |
| 413405006 | Acetobacter orientalis | Acetobacter | Acetobacter orientalis | false | false | 1 |
| 413406007 | Acetobacter orleanensis | Acetobacter | Acetobacter orleanensis | false | false | 1 |
| 396952006 | Acetobacter pasteurianus | Acetobacter | Acetobacter pasteurianus | false | false | 1 |
| 413407003 | Acetobacter peroxydans | Acetobacter | Acetobacter peroxydans | false | false | 0 |
| 708522006 | Acetobacter persici | Acetobacter | Acetobacter persici | false | false | 1 |
| 413408008 | Acetobacter polyoxogenes | Acetobacter | Acetobacter polyoxogenes | false | false | 1 |
| 413409000 | Acetobacter pomorum | Acetobacter | Acetobacter pomorum | false | false | 1 |
| 413410005 | Acetobacter species | Acetobacter | false | false | 0 |