Molecular Definition Implementation Guide for Molecular Data Types
1.0.0-ballot1 - ci-build
Molecular Definition Implementation Guide for Molecular Data Types
1.0.0-ballot1 - ci-build
Molecular Definition Implementation Guide for Molecular Data Types, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 1.0.0-ballot1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/molecular-definition-data-types/ and changes regularly. See the Directory of published versions
| Page standards status: Draft | Maturity Level: 0 |
{
"resourceType" : "ValueSet",
"id" : "amino-acid-3letter-ambiguous",
"text" : {
"status" : "extensions",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ValueSet amino-acid-3letter-ambiguous</b></p><a name=\"amino-acid-3letter-ambiguous\"> </a><a name=\"hcamino-acid-3letter-ambiguous\"> </a><ul><li>Include these codes as defined in <a href=\"CodeSystem-amino-acid.html\"><code>http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/amino-acid</code></a><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-Ala\">Ala</a></td><td style=\"color: #cccccc\">Alanine</td><td>Ala</td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-Asx\">Asx</a></td><td style=\"color: #cccccc\">Aspartic acid or asparagine</td><td>Asp or Asn</td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-Cys\">Cys</a></td><td style=\"color: #cccccc\">Cysteine</td><td>Cys</td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-Asp\">Asp</a></td><td style=\"color: #cccccc\">Aspartic acid</td><td>Asp</td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-Glu\">Glu</a></td><td style=\"color: #cccccc\">Glutamic acid</td><td>Glu</td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-Phe\">Phe</a></td><td style=\"color: #cccccc\">Phenylalanine</td><td>Phe</td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-Gly\">Gly</a></td><td style=\"color: #cccccc\">Glycine</td><td>Gly</td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-His\">His</a></td><td style=\"color: #cccccc\">Histidine</td><td>His</td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-Ile\">Ile</a></td><td style=\"color: #cccccc\">Isoleucine</td><td>Ile</td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-Lys\">Lys</a></td><td style=\"color: #cccccc\">Lysine</td><td>Lys</td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-Leu\">Leu</a></td><td style=\"color: #cccccc\">Leucine</td><td>Leu</td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-Met\">Met</a></td><td style=\"color: #cccccc\">Methionine</td><td>Met</td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-Asn\">Asn</a></td><td style=\"color: #cccccc\">Asparagine</td><td>Asn</td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-Pro\">Pro</a></td><td style=\"color: #cccccc\">Proline</td><td>Pro</td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-Gln\">Gln</a></td><td style=\"color: #cccccc\">Glutamine</td><td>Gln</td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-Arg\">Arg</a></td><td style=\"color: #cccccc\">Arginine</td><td>Arg</td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-Ser\">Ser</a></td><td style=\"color: #cccccc\">Serine</td><td>Ser</td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-Thr\">Thr</a></td><td style=\"color: #cccccc\">Threonine</td><td>Thr</td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-Sec\">Sec</a></td><td style=\"color: #cccccc\">Selenocysteine</td><td>Sec</td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-Val\">Val</a></td><td style=\"color: #cccccc\">Valine</td><td>Val</td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-Trp\">Trp</a></td><td style=\"color: #cccccc\">Tryptophan</td><td>Trp</td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-Xaa\">Xaa</a></td><td style=\"color: #cccccc\">Unknown or other amino acid</td><td>Any amino acid</td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-Tyr\">Tyr</a></td><td style=\"color: #cccccc\">Tyrosine</td><td>Tyr</td></tr><tr><td><a href=\"CodeSystem-amino-acid.html#amino-acid-Glx\">Glx</a></td><td style=\"color: #cccccc\">Glutamic acid or glutamine</td><td>Glu or Gln</td></tr></table></li></ul></div>"
},
"extension" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
"valueCode" : "cg"
},
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
"valueInteger" : 0,
"_valueInteger" : {
"extension" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
"valueCanonical" : "http://hl7.org/fhir/uv/molecular-definition-data-types/ImplementationGuide/hl7.fhir.uv.molecular-definition-data-types"
}
]
}
},
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
"valueCode" : "draft",
"_valueCode" : {
"extension" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
"valueCanonical" : "http://hl7.org/fhir/uv/molecular-definition-data-types/ImplementationGuide/hl7.fhir.uv.molecular-definition-data-types"
}
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],
"url" : "http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/amino-acid-3letter-ambiguous",
"version" : "1.0.0-ballot1",
"name" : "AminoAcid3LetterAmbiguous",
"title" : "Amino Acid 3-letter Ambiguous Symbols",
"status" : "draft",
"experimental" : false,
"date" : "2025-09-05T20:30:49+00:00",
"publisher" : "HL7 International / Clinical Genomics",
"contact" : [
{
"name" : "HL7 International / Clinical Genomics",
"telecom" : [
{
"system" : "url",
"value" : "http://www.hl7.org/Special/committees/clingenomics"
},
{
"system" : "email",
"value" : "cg@lists.HL7.org"
}
]
}
],
"description" : "Three-letter symbols for amino acids, including ambiguous symbols.",
"jurisdiction" : [
{
"coding" : [
{
"system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
"code" : "001",
"display" : "World"
}
]
}
],
"compose" : {
"include" : [
{
"system" : "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/amino-acid",
"concept" : [
{
"code" : "Ala"
},
{
"code" : "Asx"
},
{
"code" : "Cys"
},
{
"code" : "Asp"
},
{
"code" : "Glu"
},
{
"code" : "Phe"
},
{
"code" : "Gly"
},
{
"code" : "His"
},
{
"code" : "Ile"
},
{
"code" : "Lys"
},
{
"code" : "Leu"
},
{
"code" : "Met"
},
{
"code" : "Asn"
},
{
"code" : "Pro"
},
{
"code" : "Gln"
},
{
"code" : "Arg"
},
{
"code" : "Ser"
},
{
"code" : "Thr"
},
{
"code" : "Sec"
},
{
"code" : "Val"
},
{
"code" : "Trp"
},
{
"code" : "Xaa"
},
{
"code" : "Tyr"
},
{
"code" : "Glx"
}
]
}
]
}
}