Molecular Definition Implementation Guide for Molecular Data Types
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Molecular Definition Implementation Guide for Molecular Data Types, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 1.0.0-ballot1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/molecular-definition-data-types/ and changes regularly. See the Directory of published versions

: example-sequence-fmr1-cgg-20x-edited-contained - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <https://loinc.org/rdf/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:MolecularDefinition ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "example-sequence-fmr1-cgg-20x-edited-contained"] ; # 
  fhir:meta [
    ( fhir:profile [
fhir:v "http://hl7.org/fhir/uv/molecular-definition-data-types/StructureDefinition/sequence"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/uv/molecular-definition-data-types/StructureDefinition/sequence>     ] )
  ] ; # 
  fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: MolecularDefinition example-sequence-fmr1-cgg-20x-edited-contained</b></p><a name=\"example-sequence-fmr1-cgg-20x-edited-contained\"> </a><a name=\"hcexample-sequence-fmr1-cgg-20x-edited-contained\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-sequence.html\">Sequence</a></p></div><p><b>moleculeType</b>: <span title=\"Codes:{http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type dna}\">DNA Sequence</span></p><p><b>type</b>: <span title=\"Codes:{http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type dna}\">DNA Sequence</span></p><blockquote><p><b>representation</b></p><blockquote><p><b>relative</b></p><p><b>startingMolecule</b>: <a href=\"MolecularDefinition-example-sequence-fmr1-cgg-20x-repeat.html\">CGG 20X</a></p><blockquote><p><b>edit</b></p><blockquote><p><b>coordinateInterval</b></p><h3>CoordinateSystems</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>System</b></td></tr><tr><td style=\"display: none\">*</td><td><span title=\"Codes:{http://loinc.org LA30102-0}\">1-based character counting</span></td></tr></table></blockquote><p><b>replacementMolecule</b>: <a href=\"#hcexample-sequence-fmr1-cgg-20x-edited-contained/replacement\">A</a></p><p><b>replacedMolecule</b>: <a href=\"#hcexample-sequence-fmr1-cgg-20x-edited-contained/replaced\">C</a></p></blockquote></blockquote></blockquote><hr/><blockquote><p class=\"res-header-id\"><b>Generated Narrative: MolecularDefinition #replacement</b></p><a name=\"example-sequence-fmr1-cgg-20x-edited-contained/replacement\"> </a><a name=\"hcexample-sequence-fmr1-cgg-20x-edited-contained/replacement\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-sequence.html\">Sequence</a></p></div><p><b>moleculeType</b>: <span title=\"Codes:{http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type dna}\">DNA Sequence</span></p><p><b>type</b>: <span title=\"Codes:{http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type dna}\">DNA Sequence</span></p><blockquote><p><b>representation</b></p><h3>Literals</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Encoding</b></td><td><b>Value</b></td></tr><tr><td style=\"display: none\">*</td><td><span title=\"Codes:{http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/encodings nucleotide-dna-1letter-unambiguous}\">Nucleotide DNA 1-letter Unambiguous Symbols</span></td><td>A</td></tr></table></blockquote></blockquote><hr/><blockquote><p class=\"res-header-id\"><b>Generated Narrative: MolecularDefinition #replaced</b></p><a name=\"example-sequence-fmr1-cgg-20x-edited-contained/replaced\"> </a><a name=\"hcexample-sequence-fmr1-cgg-20x-edited-contained/replaced\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-sequence.html\">Sequence</a></p></div><p><b>moleculeType</b>: <span title=\"Codes:{http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type dna}\">DNA Sequence</span></p><p><b>type</b>: <span title=\"Codes:{http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type dna}\">DNA Sequence</span></p><blockquote><p><b>representation</b></p><h3>Literals</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Encoding</b></td><td><b>Value</b></td></tr><tr><td style=\"display: none\">*</td><td><span title=\"Codes:{http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/encodings nucleotide-dna-1letter-unambiguous}\">Nucleotide DNA 1-letter Unambiguous Symbols</span></td><td>C</td></tr></table></blockquote></blockquote></div>"^^rdf:XMLLiteral
  ] ; # 
  fhir:contained ( [
a fhir:MolecularDefinition ;
fhir:id [ fhir:v "replacement" ] ;
fhir:meta [
      ( fhir:profile [
fhir:v "http://hl7.org/fhir/uv/molecular-definition-data-types/StructureDefinition/sequence"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/uv/molecular-definition-data-types/StructureDefinition/sequence>       ] )     ] ;
fhir:moleculeType [
      ( fhir:coding [
fhir:system [ fhir:v "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type"^^xsd:anyURI ] ;
fhir:code [ fhir:v "dna" ] ;
fhir:display [ fhir:v "DNA Sequence" ]       ] )     ] ;
    ( fhir:type [
      ( fhir:coding [
fhir:system [ fhir:v "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type"^^xsd:anyURI ] ;
fhir:code [ fhir:v "dna" ] ;
fhir:display [ fhir:v "DNA Sequence" ]       ] )     ] ) ;
    ( fhir:representation [
fhir:literal [
fhir:encoding [
          ( fhir:coding [
fhir:system [ fhir:v "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/encodings"^^xsd:anyURI ] ;
fhir:code [ fhir:v "nucleotide-dna-1letter-unambiguous" ] ;
fhir:display [ fhir:v "Nucleotide DNA 1-letter Unambiguous Symbols" ]           ] )         ] ;
fhir:value [ fhir:v "A" ]       ]     ] )
  ] [
a fhir:MolecularDefinition ;
fhir:id [ fhir:v "replaced" ] ;
fhir:meta [
      ( fhir:profile [
fhir:v "http://hl7.org/fhir/uv/molecular-definition-data-types/StructureDefinition/sequence"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/uv/molecular-definition-data-types/StructureDefinition/sequence>       ] )     ] ;
fhir:moleculeType [
      ( fhir:coding [
fhir:system [ fhir:v "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type"^^xsd:anyURI ] ;
fhir:code [ fhir:v "dna" ] ;
fhir:display [ fhir:v "DNA Sequence" ]       ] )     ] ;
    ( fhir:type [
      ( fhir:coding [
fhir:system [ fhir:v "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type"^^xsd:anyURI ] ;
fhir:code [ fhir:v "dna" ] ;
fhir:display [ fhir:v "DNA Sequence" ]       ] )     ] ) ;
    ( fhir:representation [
fhir:literal [
fhir:encoding [
          ( fhir:coding [
fhir:system [ fhir:v "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/encodings"^^xsd:anyURI ] ;
fhir:code [ fhir:v "nucleotide-dna-1letter-unambiguous" ] ;
fhir:display [ fhir:v "Nucleotide DNA 1-letter Unambiguous Symbols" ]           ] )         ] ;
fhir:value [ fhir:v "C" ]       ]     ] )
  ] ) ; # 
  fhir:moleculeType [
    ( fhir:coding [
fhir:system [ fhir:v "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type"^^xsd:anyURI ] ;
fhir:code [ fhir:v "dna" ] ;
fhir:display [ fhir:v "DNA Sequence" ]     ] )
  ] ; # 
  fhir:type ( [
    ( fhir:coding [
fhir:system [ fhir:v "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type"^^xsd:anyURI ] ;
fhir:code [ fhir:v "dna" ] ;
fhir:display [ fhir:v "DNA Sequence" ]     ] )
  ] ) ; # 
  fhir:representation ( [
fhir:relative [
fhir:startingMolecule [
fhir:reference [ fhir:v "MolecularDefinition/example-sequence-fmr1-cgg-20x-repeat" ] ;
fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
fhir:display [ fhir:v "CGG 20X" ]       ] ;
      ( fhir:edit [
fhir:coordinateInterval [
fhir:coordinateSystem [
fhir:system [
              ( fhir:coding [
a loinc:LA30102-0 ;
fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ;
fhir:code [ fhir:v "LA30102-0" ] ;
fhir:display [ fhir:v "1-based character counting" ]               ] )             ]           ]         ] ;
fhir:replacementMolecule [
fhir:reference [ fhir:v "#replacement" ] ;
fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
fhir:display [ fhir:v "A" ]         ] ;
fhir:replacedMolecule [
fhir:reference [ fhir:v "#replaced" ] ;
fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
fhir:display [ fhir:v "C" ]         ]       ] )     ]
  ] ) . #