Molecular Definition Implementation Guide for Molecular Data Types
1.0.0-ballot1 - ci-build
Molecular Definition Implementation Guide for Molecular Data Types, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 1.0.0-ballot1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/molecular-definition-data-types/ and changes regularly. See the Directory of published versions
{
"resourceType" : "MolecularDefinition",
"id" : "example-sequence-cyp2c19-gene-region",
"meta" : {
"profile" : [
🔗 "http://hl7.org/fhir/uv/molecular-definition-data-types/StructureDefinition/sequence"
]
},
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: MolecularDefinition example-sequence-cyp2c19-gene-region</b></p><a name=\"example-sequence-cyp2c19-gene-region\"> </a><a name=\"hcexample-sequence-cyp2c19-gene-region\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-sequence.html\">Sequence</a></p></div><p><b>moleculeType</b>: <span title=\"Codes:{http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type dna}\">DNA Sequence</span></p><p><b>type</b>: <span title=\"Codes:{http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type dna}\">DNA Sequence</span></p><blockquote><p><b>representation</b></p><blockquote><p><b>extracted</b></p><p><b>startingMolecule</b>: <a href=\"MolecularDefinition-example-sequence-cyp2c19-accession.html\">MolecularDefinition: moleculeType = DNA Sequence; type = DNA Sequence</a></p><blockquote><p><b>coordinateInterval</b></p><h3>CoordinateSystems</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>System</b></td></tr><tr><td style=\"display: none\">*</td><td><span title=\"Codes:{http://loinc.org LA30100-4}\">0-based interval counting</span></td></tr></table><p><b>start</b>: 5001</p><p><b>end</b>: 97867</p></blockquote><p><b>reverseComplement</b>: false</p></blockquote></blockquote></div>"
},
"moleculeType" : {
"coding" : [
{
"system" : "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type",
"code" : "dna",
"display" : "DNA Sequence"
}
]
},
"type" : [
{
"coding" : [
{
"system" : "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type",
"code" : "dna",
"display" : "DNA Sequence"
}
]
}
],
"representation" : [
{
"extracted" : {
"startingMolecule" : {
🔗 "reference" : "MolecularDefinition/example-sequence-cyp2c19-accession"
},
"coordinateInterval" : {
"coordinateSystem" : {
"system" : {
"coding" : [
{
"system" : "http://loinc.org",
"code" : "LA30100-4",
"display" : "0-based interval counting"
}
]
}
},
"startQuantity" : {
"value" : 5001
},
"endQuantity" : {
"value" : 97867
}
},
"reverseComplement" : false
}
}
]
}