Molecular Definition Implementation Guide for Molecular Data Types
1.0.0-ballot1 - ci-build
Molecular Definition Implementation Guide for Molecular Data Types
1.0.0-ballot1 - ci-build
Molecular Definition Implementation Guide for Molecular Data Types, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 1.0.0-ballot1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/molecular-definition-data-types/ and changes regularly. See the Directory of published versions
| Page standards status: Draft | Maturity Level: 0 |
{
"resourceType" : "CodeSystem",
"id" : "nucleotide-dna",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: CodeSystem nucleotide-dna</b></p><a name=\"nucleotide-dna\"> </a><a name=\"hcnucleotide-dna\"> </a><p>This case-sensitive code system <code>http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/nucleotide-dna</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style=\"white-space:nowrap\">G<a name=\"nucleotide-dna-G\"> </a></td><td>Guanine</td><td>G</td></tr><tr><td style=\"white-space:nowrap\">A<a name=\"nucleotide-dna-A\"> </a></td><td>Adenine</td><td>A</td></tr><tr><td style=\"white-space:nowrap\">T<a name=\"nucleotide-dna-T\"> </a></td><td>Thymine</td><td>T</td></tr><tr><td style=\"white-space:nowrap\">C<a name=\"nucleotide-dna-C\"> </a></td><td>Cytosine</td><td>C</td></tr><tr><td style=\"white-space:nowrap\">R<a name=\"nucleotide-dna-R\"> </a></td><td>Purine</td><td>G or A</td></tr><tr><td style=\"white-space:nowrap\">Y<a name=\"nucleotide-dna-Y\"> </a></td><td>Pyrimidine</td><td>T or C</td></tr><tr><td style=\"white-space:nowrap\">M<a name=\"nucleotide-dna-M\"> </a></td><td>Amino</td><td>A or C</td></tr><tr><td style=\"white-space:nowrap\">K<a name=\"nucleotide-dna-K\"> </a></td><td>Keto</td><td>G or T</td></tr><tr><td style=\"white-space:nowrap\">S<a name=\"nucleotide-dna-S\"> </a></td><td>Strong interaction (3 H bonds)</td><td>G or C</td></tr><tr><td style=\"white-space:nowrap\">W<a name=\"nucleotide-dna-W\"> </a></td><td>Weak interaction (2 H bonds)</td><td>A or T</td></tr><tr><td style=\"white-space:nowrap\">H<a name=\"nucleotide-dna-H\"> </a></td><td>not-G, H follows G in the alphabet</td><td>A or C or T</td></tr><tr><td style=\"white-space:nowrap\">B<a name=\"nucleotide-dna-B\"> </a></td><td>not-A, B follows A</td><td>G or T or C</td></tr><tr><td style=\"white-space:nowrap\">V<a name=\"nucleotide-dna-V\"> </a></td><td>not-T (not-U), V follows U</td><td>G or C or A</td></tr><tr><td style=\"white-space:nowrap\">D<a name=\"nucleotide-dna-D\"> </a></td><td>not-C, D follows C</td><td>G or A or T</td></tr><tr><td style=\"white-space:nowrap\">N<a name=\"nucleotide-dna-N\"> </a></td><td>Any nucleotide</td><td>G or A or T or C</td></tr></table></div>"
},
"extension" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
"valueCode" : "cg"
},
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
"valueInteger" : 0,
"_valueInteger" : {
"extension" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
"valueCanonical" : "http://hl7.org/fhir/uv/molecular-definition-data-types/ImplementationGuide/hl7.fhir.uv.molecular-definition-data-types"
}
]
}
},
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
"valueCode" : "draft",
"_valueCode" : {
"extension" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
"valueCanonical" : "http://hl7.org/fhir/uv/molecular-definition-data-types/ImplementationGuide/hl7.fhir.uv.molecular-definition-data-types"
}
]
}
}
],
"url" : "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/nucleotide-dna",
"version" : "1.0.0-ballot1",
"name" : "NucleotideDNA",
"title" : "Nucleotide DNA Symbols",
"status" : "draft",
"experimental" : false,
"date" : "2025-09-05T20:30:49+00:00",
"publisher" : "HL7 International / Clinical Genomics",
"contact" : [
{
"name" : "HL7 International / Clinical Genomics",
"telecom" : [
{
"system" : "url",
"value" : "http://www.hl7.org/Special/committees/clingenomics"
},
{
"system" : "email",
"value" : "cg@lists.HL7.org"
}
]
}
],
"description" : "Single-letter symbols for DNA residues, including unambiguous, ambiguous, and N symbols.",
"jurisdiction" : [
{
"coding" : [
{
"system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
"code" : "001",
"display" : "World"
}
]
}
],
"caseSensitive" : true,
"content" : "complete",
"count" : 15,
"concept" : [
{
"code" : "G",
"display" : "Guanine",
"definition" : "G"
},
{
"code" : "A",
"display" : "Adenine",
"definition" : "A"
},
{
"code" : "T",
"display" : "Thymine",
"definition" : "T"
},
{
"code" : "C",
"display" : "Cytosine",
"definition" : "C"
},
{
"code" : "R",
"display" : "Purine",
"definition" : "G or A"
},
{
"code" : "Y",
"display" : "Pyrimidine",
"definition" : "T or C"
},
{
"code" : "M",
"display" : "Amino",
"definition" : "A or C"
},
{
"code" : "K",
"display" : "Keto",
"definition" : "G or T"
},
{
"code" : "S",
"display" : "Strong interaction (3 H bonds)",
"definition" : "G or C"
},
{
"code" : "W",
"display" : "Weak interaction (2 H bonds)",
"definition" : "A or T"
},
{
"code" : "H",
"display" : "not-G, H follows G in the alphabet",
"definition" : "A or C or T"
},
{
"code" : "B",
"display" : "not-A, B follows A",
"definition" : "G or T or C"
},
{
"code" : "V",
"display" : "not-T (not-U), V follows U",
"definition" : "G or C or A"
},
{
"code" : "D",
"display" : "not-C, D follows C",
"definition" : "G or A or T"
},
{
"code" : "N",
"display" : "Any nucleotide",
"definition" : "G or A or T or C"
}
]
}