Molecular Definition Implementation Guide for Molecular Data Types, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 1.0.0-ballot1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/molecular-definition-data-types/ and changes regularly. See the Directory of published versions

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: Molecular Definition Focus - XML Representation

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<CodeSystem xmlns="http://hl7.org/fhir">
  <id value="molecular-definition-focus"/>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: CodeSystem molecular-definition-focus</b></p><a name="molecular-definition-focus"> </a><a name="hcmolecular-definition-focus"> </a><p>This case-sensitive code system <code>http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecular-definition-focus</code> defines the following codes:</p><table class="codes"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style="white-space:nowrap">context-state<a name="molecular-definition-focus-context-state"> </a></td><td>Context State</td><td>Context State is the current state of the molecule at this location.</td></tr><tr><td style="white-space:nowrap">allele-state<a name="molecular-definition-focus-allele-state"> </a></td><td>Allele State</td><td>Allele State is the state of the molecule based on a specific allele.</td></tr><tr><td style="white-space:nowrap">reference-state<a name="molecular-definition-focus-reference-state"> </a></td><td>Reference State</td><td>Reference State is the state of the molecule based on a reference molecule.</td></tr><tr><td style="white-space:nowrap">alternative-state<a name="molecular-definition-focus-alternative-state"> </a></td><td>Alternative State</td><td>Alternative State is the molecule state of the molecule based on an alterntive allele.</td></tr></table></div>
  </text>
  <extension
             url="http://hl7.org/fhir/StructureDefinition/structuredefinition-wg">
    <valueCode value="cg"/>
  </extension>
  <extension
             url="http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm">
    <valueInteger value="0">
      <extension
                 url="http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom">
        <valueCanonical
                        value="http://hl7.org/fhir/uv/molecular-definition-data-types/ImplementationGuide/hl7.fhir.uv.molecular-definition-data-types"/>
      </extension>
    </valueInteger>
  </extension>
  <extension
             url="http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status">
    <valueCode value="draft">
      <extension
                 url="http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom">
        <valueCanonical
                        value="http://hl7.org/fhir/uv/molecular-definition-data-types/ImplementationGuide/hl7.fhir.uv.molecular-definition-data-types"/>
      </extension>
    </valueCode>
  </extension>
  <url
       value="http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecular-definition-focus"/>
  <version value="1.0.0-ballot1"/>
  <name value="MolecularDefinitionFocus"/>
  <title value="Molecular Definition Focus"/>
  <status value="draft"/>
  <experimental value="false"/>
  <date value="2025-09-26T21:26:20+00:00"/>
  <publisher value="HL7 International / Clinical Genomics"/>
  <contact>
    <name value="HL7 International / Clinical Genomics"/>
    <telecom>
      <system value="url"/>
      <value value="http://www.hl7.org/Special/committees/clingenomics"/>
    </telecom>
    <telecom>
      <system value="email"/>
      <value value="cg@lists.HL7.org"/>
    </telecom>
  </contact>
  <description
               value="Molecular Definition Focus terms that describe various representation elements."/>
  <jurisdiction>
    <coding>
      <system value="http://unstats.un.org/unsd/methods/m49/m49.htm"/>
      <code value="001"/>
      <display value="World"/>
    </coding>
  </jurisdiction>
  <caseSensitive value="true"/>
  <content value="complete"/>
  <count value="4"/>
  <concept>
    <code value="context-state"/>
    <display value="Context State"/>
    <definition
                value="Context State is the current state of the molecule at this location."/>
  </concept>
  <concept>
    <code value="allele-state"/>
    <display value="Allele State"/>
    <definition
                value="Allele State is the state of the molecule based on a specific allele."/>
  </concept>
  <concept>
    <code value="reference-state"/>
    <display value="Reference State"/>
    <definition
                value="Reference State is the state of the molecule based on a reference molecule."/>
  </concept>
  <concept>
    <code value="alternative-state"/>
    <display value="Alternative State"/>
    <definition
                value="Alternative State is the molecule state of the molecule based on an alterntive allele."/>
  </concept>
</CodeSystem>