 0 Table of Contents |
  1 Introduction |
  2 OMOP CDM |
  3 Use Cases |
  4 Source Data Acquisition and Expectations |
  5 Identifiers, De-identification and Privacy |
  6 Common Challenges When Transforming FHIR to OMOP |
  7 Transformation Strategies & Best Practices |
  8 Understanding FHIR Modifier Extensions |
  9 Coded Field Mapping Principles |
  10 FHIR to OMOP Code Mapping Patterns |
  11 CodeableConcept Mapping Patterns |
  12 Value-as-Concept Mapping Pattern |
  13 Populating Race and Ethnicity |
  14 Technical Artifacts |
  15 Actors |
  16 Conformance Statements |
  17 Terminology Server API Utilization |
  18 Change Log |
  19 Acknowledgements |
  20 Artifacts Summary |
   20.1 ETL Implementer |
   20.2 FHIR Source System |
   20.3 OMOP Target Instance |
   20.4 Terminology Server |
   20.5 Transformation Engine |
   20.6 Narrative Conformance Statements |
   20.7 CareSite OMOP Table |
   20.8 Condition Era OMOP Table |
   20.9 Condition Occurrence OMOP Table |
   20.10 Cost OMOP Table |
   20.11 Death OMOP Table |
   20.12 Device Exposure OMOP Table |
   20.13 Dose Era OMOP Table |
   20.14 Drug Era OMOP Table |
   20.15 Drug Exposure OMOP Table |
   20.16 Episode Event OMOP Table |
   20.17 Episode OMOP Table |
   20.18 Fact Relationship OMOP Table |
   20.19 Location OMOP Table |
   20.20 Measurement OMOP Table |
   20.21 Note NLP OMOP Table |
   20.22 Note OMOP Table |
   20.23 Observation OMOP Table |
   20.24 Observation Period OMOP Table |
   20.25 Patient Record Setting |
   20.26 Payer Plan Period OMOP Table |
   20.27 Person OMOP Table |
   20.28 Procedure Occurrence OMOP Table |
   20.29 Provider OMOP Table |
   20.30 Specimen OMOP Table |
   20.31 Visit Detail OMOP Table |
   20.32 Visit Occurrence OMOP Table |
   20.33 FHIR to OMOP Conformance Statement Categories |
   20.34 FHIR to OMOP Requirement Codes |
   20.35 Mapping Allergy resource to Observation OMOP Domain |
   20.36 Mapping Allergy resource to Observation OMOP Domain V4 |
   20.37 Mapping Blood Pressure Vital Signs resource to Measurement OMOP Domain |
   20.38 Mapping Blood Pressure Vital Signs resource to Measurement OMOP Domain V4 |
   20.39 Mapping Condition resource to Condition Occurrence OMOP Domain |
   20.40 Mapping Condition resource to Condition Occurrence OMOP Domain V4 |
   20.41 Mapping Encounter resource to VisitOccurrence OMOP Domain |
   20.42 Mapping Encounter resource to VisitOccurrence OMOP Domain V4 |
   20.43 Mapping Immunization resource to Drug Exposure OMOP Domain |
   20.44 Mapping Immunization resource to Drug Exposure OMOP Domain V4 |
   20.45 Mapping Observation resource to Measurement OMOP Domain |
   20.46 Mapping Observation resource to Measurement OMOP Domain V4 |
   20.47 Mapping Observation resource to Observation OMOP Domain |
   20.48 Mapping Observation resource to Observation OMOP Domain V4 |
   20.49 Mapping Patient resource to Person OMOP Domain |
   20.50 Mapping Patient resource to Person OMOP Domain V4 |
   20.51 Mapping Procedure resource to Procedure Occurrence OMOP Domain |
   20.52 Mapping Procedure resource to Procedure Occurrence OMOP Domain V4 |
   20.53 Mapping an International Patient Summary resource to OMOP domains collected in a RecordSet resource |
   20.54 Mapping an International Patient Summary resource to OMOP domains collected in a RecordSet resource V4 |
   20.55 Mapping Vital Ssigns resource to Measurement OMOP Domain |
   20.56 Mapping Vital Ssigns resource to Measurement OMOP Domain V4 |
   20.57 Mapping MedicationStatement resource to DrugExposure OMOP Domain |
   20.58 Mapping MedicationStatement resource to DrugExposure OMOP Domain V4 |
   20.59 AdministrativeGender codes to OMOP |
   20.60 AllergyIntolerance allergy category codes to OMOP |
   20.61 AllergyIntolerance intolerance category codes to OMOP |
   20.62 AllergyIntolerance substance codes to OMOP |
   20.63 Blood Pressure codes to OMOP |
   20.64 Clinical Findings codes to OMOP |
   20.65 Condition status codes to OMOP |
   20.66 Encounter Admission Source codes to OMOP |
   20.67 Encounter Class codes to OMOP |
   20.68 Encounter Discharge Disposition codes to OMOP |
   20.69 Immunization information source codes to OMOP |
   20.70 Immunization route codes to OMOP |
   20.71 Immunization vaccine codes to OMOP |
   20.72 Procedure type codes to OMOP |
   20.73 VitalSign codes to OMOP |