FHIR to OMOP FHIR IG
2.0.0-ballot - STU 1 Ballot International flag

FHIR to OMOP FHIR IG, published by HL7 International / Biomedical Research and Regulation. This guide is not an authorized publication; it is the continuous build for version 2.0.0-ballot built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-omop-ig/ and changes regularly. See the Directory of published versions

Table of Contents

Page standards status: Informative
.. 0 Table of Contents
... 1 Introduction
... 2 OMOP CDM
... 3 Use Cases
... 4 Source Data Acquisition and Expectations
... 5 Identifiers, De-identification and Privacy
... 6 Common Challenges When Transforming FHIR to OMOP
... 7 Transformation Strategies & Best Practices
... 8 Understanding FHIR Modifier Extensions
... 9 Coded Field Mapping Principles
... 10 FHIR to OMOP Code Mapping Patterns
... 11 CodeableConcept Mapping Patterns
... 12 Value-as-Concept Mapping Pattern
... 13 Populating Race and Ethnicity
... 14 Technical Artifacts
... 15 Actors
... 16 Conformance Statements
... 17 Terminology Server API Utilization
... 18 Change Log
... 19 Acknowledgements
... 20 Artifacts Summary
.... 20.1 ETL Implementer
.... 20.2 FHIR Source System
.... 20.3 OMOP Target Instance
.... 20.4 Terminology Server
.... 20.5 Transformation Engine
.... 20.6 Narrative Conformance Statements
.... 20.7 CareSite OMOP Table
.... 20.8 Condition Era OMOP Table
.... 20.9 Condition Occurrence OMOP Table
.... 20.10 Cost OMOP Table
.... 20.11 Death OMOP Table
.... 20.12 Device Exposure OMOP Table
.... 20.13 Dose Era OMOP Table
.... 20.14 Drug Era OMOP Table
.... 20.15 Drug Exposure OMOP Table
.... 20.16 Episode Event OMOP Table
.... 20.17 Episode OMOP Table
.... 20.18 Fact Relationship OMOP Table
.... 20.19 Location OMOP Table
.... 20.20 Measurement OMOP Table
.... 20.21 Note NLP OMOP Table
.... 20.22 Note OMOP Table
.... 20.23 Observation OMOP Table
.... 20.24 Observation Period OMOP Table
.... 20.25 Patient Record Setting
.... 20.26 Payer Plan Period OMOP Table
.... 20.27 Person OMOP Table
.... 20.28 Procedure Occurrence OMOP Table
.... 20.29 Provider OMOP Table
.... 20.30 Specimen OMOP Table
.... 20.31 Visit Detail OMOP Table
.... 20.32 Visit Occurrence OMOP Table
.... 20.33 FHIR to OMOP Conformance Statement Categories
.... 20.34 FHIR to OMOP Requirement Codes
.... 20.35 Mapping Allergy resource to Observation OMOP Domain
.... 20.36 Mapping Blood Pressure Vital Signs resource to Measurement OMOP Domain
.... 20.37 Mapping Condition resource to Condition Occurrence OMOP Domain
.... 20.38 Mapping Encounter resource to VisitOccurrence OMOP Domain
.... 20.39 Mapping Immunization resource to Drug Exposure OMOP Domain
.... 20.40 Mapping Observation resource to Measurement OMOP Domain
.... 20.41 Mapping Observation resource to Observation OMOP Domain
.... 20.42 Mapping Patient resource to Person OMOP Domain
.... 20.43 Mapping Procedure resource to Procedure Occurrence OMOP Domain
.... 20.44 Mapping an International Patient Summary resource to OMOP domains collected in a RecordSet resource
.... 20.45 Mapping Vital Ssigns resource to Measurement OMOP Domain
.... 20.46 Mapping MedicationStatement resource to DrugExposure OMOP Domain
.... 20.47 AdministrativeGender codes to OMOP
.... 20.48 AllergyIntolerance allergy category codes to OMOP
.... 20.49 AllergyIntolerance intolerance category codes to OMOP
.... 20.50 AllergyIntolerance substance codes to OMOP
.... 20.51 Blood Pressure codes to OMOP
.... 20.52 Clinical Findings codes to OMOP
.... 20.53 Condition status codes to OMOP
.... 20.54 Encounter Admission Source codes to OMOP
.... 20.55 Encounter Class codes to OMOP
.... 20.56 Encounter Discharge Disposition codes to OMOP
.... 20.57 Immunization information source codes to OMOP
.... 20.58 Immunization route codes to OMOP
.... 20.59 Immunization vaccine codes to OMOP
.... 20.60 VitalSign codes to OMOP