FHIR to OMOP FHIR IG
2.0.0-ballot - STU 1 Ballot
FHIR to OMOP FHIR IG
2.0.0-ballot - STU 1 Ballot
FHIR to OMOP FHIR IG, published by HL7 International / Biomedical Research and Regulation. This guide is not an authorized publication; it is the continuous build for version 2.0.0-ballot built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-omop-ig/ and changes regularly. See the Directory of published versions
| Official URL: http://hl7.org/fhir/uv/omop/StructureDefinition/Specimen | Version: 2.0.0-ballot | ||||
| Standards status: Trial-use | Maturity Level: 2 | Computable Name: Specimen | |||
| Other Identifiers: OID:2.16.840.1.113883.4.642.40.77.42.24 | |||||
The specimen domain contains the records identifying biological samples from a person.
Usages:
You can also check for usages in the FHIR IG Statistics
Description Differentials, Snapshots, and other representations.
This structure is derived from Base
| Name | Flags | Card. | Type | Description & Constraints Filter:  |
|---|---|---|---|---|
  Specimen |
0..* | Base | Specimen OMOP Table Instances of this type can be the target of a Reference | |
  specimen_id |
1..1 | code | Specimen Identifier | |
| person_id |
1..1 | integer | Person | |
| specimen_concept_id |
1..1 | code | Specimen | |
| specimen_type_concept_id |
1..1 | code | Specimen Type | |
| specimen_date |
1..1 | date | Specimen Date | |
| specimen_datetime |
0..1 | dateTime | Specimen Datetime | |
| quantity |
0..1 | integer | Quantity | |
| unit_concept_id |
0..1 | code | Unit | |
| anatomic_site_concept_id |
0..1 | code | Anatomic Site | |
| disease_status_concept_id |
0..1 | code | Disease Status | |
| specimen_source_id |
0..1 | string | Specimen Source | |
| specimen_source_value |
0..1 | string | Specimen Source Value | |
| unit_source_value |
0..1 | string | Unit Source Value | |
| anatomic_site_source_value |
0..1 | string | Anatomic Site Source Value | |
 disease_status_source_value |
0..1 | string | Disease Site Source Value | |
| Documentation for this format | ||||
| Name | Flags | Card. | Type | Description & Constraints Filter: |
|---|---|---|---|---|
 Specimen |
0..* | Base | Specimen OMOP Table Instances of this type can be the target of a Reference | |
| specimen_id |
1..1 | code | Specimen Identifier | |
| person_id |
1..1 | integer | Person | |
| specimen_concept_id |
1..1 | code | Specimen | |
| specimen_type_concept_id |
1..1 | code | Specimen Type | |
| specimen_date |
1..1 | date | Specimen Date | |
| specimen_datetime |
0..1 | dateTime | Specimen Datetime | |
| quantity |
0..1 | integer | Quantity | |
| unit_concept_id |
0..1 | code | Unit | |
| anatomic_site_concept_id |
0..1 | code | Anatomic Site | |
| disease_status_concept_id |
0..1 | code | Disease Status | |
| specimen_source_id |
0..1 | string | Specimen Source | |
| specimen_source_value |
0..1 | string | Specimen Source Value | |
| unit_source_value |
0..1 | string | Unit Source Value | |
| anatomic_site_source_value |
0..1 | string | Anatomic Site Source Value | |
| disease_status_source_value |
0..1 | string | Disease Site Source Value | |
| Documentation for this format | ||||
Differential View
This structure is derived from Base
| Name | Flags | Card. | Type | Description & Constraints Filter: |
|---|---|---|---|---|
| Specimen |
0..* | Base | Specimen OMOP Table Instances of this type can be the target of a Reference | |
| specimen_id |
1..1 | code | Specimen Identifier | |
| person_id |
1..1 | integer | Person | |
| specimen_concept_id |
1..1 | code | Specimen | |
| specimen_type_concept_id |
1..1 | code | Specimen Type | |
| specimen_date |
1..1 | date | Specimen Date | |
| specimen_datetime |
0..1 | dateTime | Specimen Datetime | |
| quantity |
0..1 | integer | Quantity | |
| unit_concept_id |
0..1 | code | Unit | |
| anatomic_site_concept_id |
0..1 | code | Anatomic Site | |
| disease_status_concept_id |
0..1 | code | Disease Status | |
| specimen_source_id |
0..1 | string | Specimen Source | |
| specimen_source_value |
0..1 | string | Specimen Source Value | |
| unit_source_value |
0..1 | string | Unit Source Value | |
| anatomic_site_source_value |
0..1 | string | Anatomic Site Source Value | |
| disease_status_source_value |
0..1 | string | Disease Site Source Value | |
| Documentation for this format | ||||
Snapshot ViewView
| Name | Flags | Card. | Type | Description & Constraints Filter: |
|---|---|---|---|---|
| Specimen |
0..* | Base | Specimen OMOP Table Instances of this type can be the target of a Reference | |
| specimen_id |
1..1 | code | Specimen Identifier | |
| person_id |
1..1 | integer | Person | |
| specimen_concept_id |
1..1 | code | Specimen | |
| specimen_type_concept_id |
1..1 | code | Specimen Type | |
| specimen_date |
1..1 | date | Specimen Date | |
| specimen_datetime |
0..1 | dateTime | Specimen Datetime | |
| quantity |
0..1 | integer | Quantity | |
| unit_concept_id |
0..1 | code | Unit | |
| anatomic_site_concept_id |
0..1 | code | Anatomic Site | |
| disease_status_concept_id |
0..1 | code | Disease Status | |
| specimen_source_id |
0..1 | string | Specimen Source | |
| specimen_source_value |
0..1 | string | Specimen Source Value | |
| unit_source_value |
0..1 | string | Unit Source Value | |
| anatomic_site_source_value |
0..1 | string | Anatomic Site Source Value | |
| disease_status_source_value |
0..1 | string | Disease Site Source Value | |
| Documentation for this format | ||||
IG © 2023+ HL7 International / Biomedical Research and Regulation.
Package hl7.fhir.uv.omop#2.0.0-ballot based on FHIR 5.0.0.
Generated
2026-11-06
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