FHIR to OMOP FHIR IG
2.0.0-ballot - STU 1 Ballot
FHIR to OMOP FHIR IG
2.0.0-ballot - STU 1 Ballot
FHIR to OMOP FHIR IG, published by HL7 International / Biomedical Research and Regulation. This guide is not an authorized publication; it is the continuous build for version 2.0.0-ballot built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-omop-ig/ and changes regularly. See the Directory of published versions
| Page standards status: Trial-use | Maturity Level: 2 |
<StructureMap xmlns="http://hl7.org/fhir">
<id value="SimpleVitalSignsMap"/>
<language value="en"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: StructureMap SimpleVitalSignsMap</b></p><a name="SimpleVitalSignsMap"> </a><a name="hcSimpleVitalSignsMap"> </a><pre class="fml">
<span style="color: #cc00cc">/// <b>url</b> = </span><span style="color: blue">'http://hl7.org/fhir/uv/omop/StructureMap/SimpleVitalSignsMap'</span>
<span style="color: #cc00cc">/// <b>name</b> = </span><span style="color: blue">'SimpleVitalSignsMap'</span>
<span style="color: #cc00cc">/// <b>title</b> = </span><span style="color: blue">'Mapping Vital Ssigns resource to Measurement OMOP Domain'</span>
<span style="color: #cc00cc">/// <b>status</b> = </span><span style="color: blue">'active'</span>
<span style="color: #cc00cc">/// <b>description</b> = </span><span style="color: blue">'This mapping maps simple FHIR Vital Signs instances that are considered measurements to OMOP Measurement Table objects.'</span>
<b>uses</b><span style="color: navy"> "</span><a href="http://hl7.org/fhir/R5/observation.html" title="Observation">http://hl7.org/fhir/StructureDefinition/Observation</a><span style="color: navy">" </span><b>alias </b>VitalSigns <b>as </b><b>source</b>
<b>uses</b><span style="color: navy"> "</span><a href="StructureDefinition-Measurement.html" title="Measurement OMOP Table">http://hl7.org/fhir/uv/omop/StructureDefinition/Measurement</a><span style="color: navy">" </span><b>alias </b>MeasureTable <b>as </b><b>target</b>
<b>group </b>VitalSigns<span style="color: navy">(</span><b>source</b> <span style="color: maroon">src</span><span style="color: navy"> : </span>VitalSigns, <b>target</b> <span style="color: maroon">tgt</span><span style="color: navy"> : </span>MeasureTable<span style="color: navy">)</span><span style="color: navy"> {
</span> src<b> where </b><span style="color: navy">(</span>src.category.coding.code contains 'vital-signs'<span style="color: navy">)</span><b> then</b><span style="color: navy"> {
</span> src<b> where </b><span style="color: navy">(</span>src.effective.empty().not()<span style="color: navy">)</span><b> then</b><span style="color: navy"> {
</span> src.code<b> as </b><span style="color: maroon">s</span><span style="color: navy"><b> -> </b></span>tgt<b> then</b><span style="color: navy"> {
</span> s.coding<b> as </b><span style="color: maroon">sc</span><span style="color: navy"><b> -> </b></span>tgt<b> then</b><span style="color: navy"> {
</span> sc.system<b> where </b><span style="color: navy">(</span>'http://loinc.org'<span style="color: navy">)</span><b> then</b><span style="color: navy"> {
</span> sc.code<b> as </b><span style="color: maroon">a</span><b> where </b><span style="color: navy">(</span>(a in ('85354-9' | '8480-6' | '8462-4' | '8478-0')).not()<span style="color: navy">)</span><span style="color: navy"><b> -> </b></span>tgt.measurement_type_concept_id = <b>translate</b><span style="color: navy">(</span><span style="color: maroon">a</span><span style="color: navy">, </span><span style="color: blue">'http://hl7.org/fhir/uv/omop/ConceptMap/VitalSignsCodes'</span><span style="color: navy">, </span><span style="color: blue">'code'</span><span style="color: navy">)</span><b> then</b><span style="color: navy"> {
</span> sc.display<b> as </b><span style="color: maroon">display</span><span style="color: navy"><b> -> </b></span>tgt.measurement_concept_id = <span style="color: maroon">display</span><span style="color: navy">;</span>
src.effective<span style="color: navy"> : </span>dateTime<b> as </b><span style="color: maroon">edt</span><span style="color: navy"><b> -> </b></span> tgt.measurement_datetime = <span style="color: maroon">edt</span><span style="color: navy">, </span> tgt.measurement_date = <span style="color: navy">(</span>edt.toString().substring(0, 10)<span style="color: navy">)</span><span style="color: navy">;</span>
src.effective<span style="color: navy"> : </span>instant<b> as </b><span style="color: maroon">einst</span><span style="color: navy"><b> -> </b></span> tgt.measurement_datetime = <b>cast</b><span style="color: navy">(</span><span style="color: maroon">einst</span><span style="color: navy">, </span><span style="color: blue">'dateTime'</span><span style="color: navy">)</span><span style="color: navy">, </span> <span style="color: navy">(</span>einst.toString().substring(0, 10)<span style="color: navy">)</span><span style="color: navy">;</span>
src.effective<span style="color: navy"> : </span>Period<b> as </b><span style="color: maroon">s</span><span style="color: navy"><b> -> </b></span>tgt<b> then</b><span style="color: navy"> {
</span> s.start<b> as </b><span style="color: maroon">eps</span><span style="color: navy"><b> -> </b></span> tgt.measurement_datetime = <b>cast</b><span style="color: navy">(</span><span style="color: maroon">eps</span><span style="color: navy">, </span><span style="color: blue">'dateTime'</span><span style="color: navy">)</span><span style="color: navy">, </span> tgt.measurement_date = <span style="color: navy">(</span>eps.toString().substring(0, 10)<span style="color: navy">)</span><span style="color: navy">;</span>
<span style="color: navy">}</span><span style="color: navy">;</span>
<span style="color: #b36b00" title="This element was not defined prior to R5">// src.issued as s where (src.issued.toDate() != src.effective) -> tgt.measurement_source_value = (s.toString());</span>
src.value<span style="color: navy"> : </span>Quantity<b> as </b><span style="color: maroon">s</span><span style="color: navy"><b> -> </b></span>tgt<b> then</b><span style="color: navy"> {
</span> s.value<b> as </b><span style="color: maroon">a</span><span style="color: navy"><b> -> </b></span>tgt.value_as_number = <b>cast</b><span style="color: navy">(</span><span style="color: maroon">a</span><span style="color: navy">, </span><span style="color: blue">'decimal'</span><span style="color: navy">)</span><span style="color: navy">;</span>
s.unit<b> as </b><span style="color: maroon">b</span><span style="color: navy"><b> -> </b></span>tgt.unit_concept_id = <span style="color: maroon">b</span><span style="color: navy">;</span>
<span style="color: navy">}</span><span style="color: navy">;</span>
src.value<span style="color: navy"> : </span>CodeableConcept<b> as </b><span style="color: maroon">s</span><span style="color: navy"><b> -> </b></span>tgt<b> then</b><span style="color: navy"> {
</span> s.coding<b> as </b><span style="color: maroon">sc</span><span style="color: navy"><b> -> </b></span>tgt<b> then</b><span style="color: navy"> {
</span> sc.code<b> as </b><span style="color: maroon">code</span><span style="color: navy"><b> -> </b></span>tgt.value_as_concept_id = <span style="color: maroon">code</span><span style="color: navy">;</span>
<span style="color: navy">}</span><span style="color: navy">;</span>
<span style="color: navy">}</span><span style="color: navy">;</span>
src.value<span style="color: navy"> : </span>string<b> as </b><span style="color: maroon">b</span><span style="color: navy"><b> -> </b></span>tgt.value_source_value = <span style="color: maroon">b</span><span style="color: navy">;</span>
src.interpretation<b> as </b><span style="color: maroon">c</span><span style="color: navy"><b> -> </b></span>tgt.value_as_concept_id = <b>cast</b><span style="color: navy">(</span><span style="color: maroon">c</span><span style="color: navy">, </span><span style="color: blue">'code'</span><span style="color: navy">)</span><span style="color: navy">;</span>
src.note<b> as </b><span style="color: maroon">d</span><span style="color: navy"><b> -> </b></span>tgt.measurement_source_value = <b>cast</b><span style="color: navy">(</span><span style="color: maroon">d</span><span style="color: navy">, </span><span style="color: blue">'string'</span><span style="color: navy">)</span><span style="color: navy">;</span>
<span style="color: navy">}</span><span style="color: navy">;</span>
<span style="color: navy">}</span><span style="color: navy">;</span>
<span style="color: navy">}</span><span style="color: navy">;</span>
<span style="color: navy">}</span><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"vitalSignMapping"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"OnlyMeasures"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span></pre></div>
</text>
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-wg">
<valueCode value="brr"/>
</extension>
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm">
<valueInteger value="2">
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom">
<valueCanonical
value="http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"/>
</extension>
</valueInteger>
</extension>
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status">
<valueCode value="trial-use">
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom">
<valueCanonical
value="http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"/>
</extension>
</valueCode>
</extension>
<url value="http://hl7.org/fhir/uv/omop/StructureMap/SimpleVitalSignsMap"/>
<identifier>
<system value="urn:ietf:rfc:3986"/>
<value value="urn:oid:2.16.840.1.113883.4.642.40.77.43.11"/>
</identifier>
<version value="2.0.0-ballot"/>
<name value="SimpleVitalSignsMap"/>
<title value="Mapping Vital Ssigns resource to Measurement OMOP Domain"/>
<status value="active"/>
<date value="2026-08-14T16:09:20+00:00"/>
<publisher value="HL7 International / Biomedical Research and Regulation"/>
<contact>
<name value="HL7 International / Biomedical Research and Regulation"/>
<telecom>
<system value="url"/>
<value value="http://www.hl7.org/Special/committees/rcrim"/>
</telecom>
</contact>
<description
value="This mapping maps simple FHIR Vital Signs instances that are considered measurements to OMOP Measurement Table objects."/>
<jurisdiction>
<coding>
<system value="http://unstats.un.org/unsd/methods/m49/m49.htm"/>
<code value="001"/>
<display value="World"/>
</coding>
</jurisdiction>
<structure>
<url value="http://hl7.org/fhir/StructureDefinition/Observation"/>
<mode value="source"/>
<alias value="VitalSigns"/>
</structure>
<structure>
<url value="http://hl7.org/fhir/uv/omop/StructureDefinition/Measurement"/>
<mode value="target"/>
<alias value="MeasureTable"/>
</structure>
<group>
<name value="VitalSigns"/>
<input>
<name value="src"/>
<type value="VitalSigns"/>
<mode value="source"/>
</input>
<input>
<name value="tgt"/>
<type value="MeasureTable"/>
<mode value="target"/>
</input>
<rule>
<name value="OnlyMeasures"/>
<source>
<context value="src"/>
<condition value="src.category.coding.code contains 'vital-signs'"/>
</source>
<rule>
<name value="vitalSignMapping"/>
<source>
<context value="src"/>
<condition value="src.effective.empty().not()"/>
</source>
<rule>
<name value="code"/>
<source>
<context value="src"/>
<element value="code"/>
<variable value="s"/>
</source>
<target>
<context value="tgt"/>
</target>
<rule>
<name value="coding"/>
<source>
<context value="s"/>
<element value="coding"/>
<variable value="sc"/>
</source>
<target>
<context value="tgt"/>
</target>
<rule>
<name value="system"/>
<source>
<context value="sc"/>
<element value="system"/>
<condition value="'http://loinc.org'"/>
</source>
<rule>
<name value="code"/>
<source>
<context value="sc"/>
<element value="code"/>
<variable value="a"/>
<condition
value="(a in ('85354-9' | '8480-6' | '8462-4' | '8478-0')).not()"/>
</source>
<target>
<context value="tgt"/>
<element value="measurement_type_concept_id"/>
<transform value="translate"/>
<parameter>
<valueId value="a"/>
</parameter>
<parameter>
<valueString
value="http://hl7.org/fhir/uv/omop/ConceptMap/VitalSignsCodes"/>
</parameter>
<parameter>
<valueString value="code"/>
</parameter>
</target>
<rule>
<name value="display"/>
<source>
<context value="sc"/>
<element value="display"/>
<variable value="display"/>
</source>
<target>
<context value="tgt"/>
<element value="measurement_concept_id"/>
<transform value="copy"/>
<parameter>
<valueId value="display"/>
</parameter>
</target>
</rule>
<rule>
<name value="effectiveDateTime"/>
<source>
<context value="src"/>
<type value="dateTime"/>
<element value="effective"/>
<variable value="edt"/>
</source>
<target>
<context value="tgt"/>
<element value="measurement_datetime"/>
<transform value="copy"/>
<parameter>
<valueId value="edt"/>
</parameter>
</target>
<target>
<context value="tgt"/>
<element value="measurement_date"/>
<transform value="evaluate"/>
<parameter>
<valueString value="edt.toString().substring(0, 10)"/>
</parameter>
</target>
</rule>
<rule>
<name value="effectiveInstant"/>
<source>
<context value="src"/>
<type value="instant"/>
<element value="effective"/>
<variable value="einst"/>
</source>
<target>
<context value="tgt"/>
<element value="measurement_datetime"/>
<transform value="cast"/>
<parameter>
<valueId value="einst"/>
</parameter>
<parameter>
<valueString value="dateTime"/>
</parameter>
</target>
<target>
<transform value="evaluate"/>
<parameter>
<valueString value="einst.toString().substring(0, 10)"/>
</parameter>
</target>
</rule>
<rule>
<name value="effectivePeriod"/>
<source>
<context value="src"/>
<type value="Period"/>
<element value="effective"/>
<variable value="s"/>
</source>
<target>
<context value="tgt"/>
</target>
<rule>
<name value="start"/>
<source>
<context value="s"/>
<element value="start"/>
<variable value="eps"/>
</source>
<target>
<context value="tgt"/>
<element value="measurement_datetime"/>
<transform value="cast"/>
<parameter>
<valueId value="eps"/>
</parameter>
<parameter>
<valueString value="dateTime"/>
</parameter>
</target>
<target>
<context value="tgt"/>
<element value="measurement_date"/>
<transform value="evaluate"/>
<parameter>
<valueString value="eps.toString().substring(0, 10)"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="valueQuantity"/>
<source>
<context value="src"/>
<type value="Quantity"/>
<element value="value"/>
<variable value="s"/>
</source>
<target>
<context value="tgt"/>
</target>
<rule>
<name value="value"/>
<source>
<context value="s"/>
<element value="value"/>
<variable value="a"/>
</source>
<target>
<context value="tgt"/>
<element value="value_as_number"/>
<transform value="cast"/>
<parameter>
<valueId value="a"/>
</parameter>
<parameter>
<valueString value="decimal"/>
</parameter>
</target>
</rule>
<rule>
<name value="unit"/>
<source>
<context value="s"/>
<element value="unit"/>
<variable value="b"/>
</source>
<target>
<context value="tgt"/>
<element value="unit_concept_id"/>
<transform value="copy"/>
<parameter>
<valueId value="b"/>
</parameter>
</target>
</rule>
<documentation
value="src.issued as s where (src.issued.toDate() != src.effective) -> tgt.measurement_source_value = (s.toString());"/>
</rule>
<rule>
<name value="valueCodeableConcept"/>
<source>
<context value="src"/>
<type value="CodeableConcept"/>
<element value="value"/>
<variable value="s"/>
</source>
<target>
<context value="tgt"/>
</target>
<rule>
<name value="coding"/>
<source>
<context value="s"/>
<element value="coding"/>
<variable value="sc"/>
</source>
<target>
<context value="tgt"/>
</target>
<rule>
<name value="code"/>
<source>
<context value="sc"/>
<element value="code"/>
<variable value="code"/>
</source>
<target>
<context value="tgt"/>
<element value="value_as_concept_id"/>
<transform value="copy"/>
<parameter>
<valueId value="code"/>
</parameter>
</target>
</rule>
</rule>
</rule>
<rule>
<name value="valueString"/>
<source>
<context value="src"/>
<type value="string"/>
<element value="value"/>
<variable value="b"/>
</source>
<target>
<context value="tgt"/>
<element value="value_source_value"/>
<transform value="copy"/>
<parameter>
<valueId value="b"/>
</parameter>
</target>
</rule>
<rule>
<name value="interpretation"/>
<source>
<context value="src"/>
<element value="interpretation"/>
<variable value="c"/>
</source>
<target>
<context value="tgt"/>
<element value="value_as_concept_id"/>
<transform value="cast"/>
<parameter>
<valueId value="c"/>
</parameter>
<parameter>
<valueString value="code"/>
</parameter>
</target>
</rule>
<rule>
<name value="note"/>
<source>
<context value="src"/>
<element value="note"/>
<variable value="d"/>
</source>
<target>
<context value="tgt"/>
<element value="measurement_source_value"/>
<transform value="cast"/>
<parameter>
<valueId value="d"/>
</parameter>
<parameter>
<valueString value="string"/>
</parameter>
</target>
</rule>
</rule>
</rule>
</rule>
</rule>
</rule>
</rule>
</group>
</StructureMap>
IG © 2023+ HL7 International / Biomedical Research and Regulation.
Package hl7.fhir.uv.omop#2.0.0-ballot based on FHIR 5.0.0.
Generated
2026-08-14
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