minimal Common Oncology Data Elements (mCODE) Implementation Guide
4.0.0-ballot - STU4 Ballot United States of America flag

minimal Common Oncology Data Elements (mCODE) Implementation Guide, published by HL7 International / Clinical Interoperability Council. This guide is not an authorized publication; it is the continuous build for version 4.0.0-ballot built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of and changes regularly. See the Directory of published versions

Example Observation: genomic-variant-somatic-single-nucleotide

Generated Narrative: Observation

Resource Observation "genomic-variant-somatic-single-nucleotide"

Profile: Genomic Variant Profile

status: final

category: Laboratory (Observation Category Codes#laboratory)

code: Genetic var assess (LOINC#69548-6)

subject: Patient/cancer-patient-john-anyperson " ANYPERSON"

effective: 2019-04-01

performer: Practitioner/us-core-practitioner-owen-oncologist " ONCOLOGIST"

value: Present (LOINC#LA9633-4)

interpretation: Positive (qualifier value) (SNOMED CT#10828004)

method: Sequencing (LOINC#LA26398-0)


code: Gene studied ID (LOINC#48018-6)

value: STK11 (HUGO Gene Nomenclature Committee Genes#HGNC:11389)


code: Simple var ID (LOINC#81252-9)

value: NM_000455.5(STK11):c.725G>A (p.Gly242Glu) (ClinVar Variant ID#611264)


code: Struct var HGVS name (LOINC#81290-9)

value: NM_000455.5:c.725G>A (Human Genome Variation Society nomenclature#NM_000455.5:c.725G>A)


code: Genomic source class (LOINC#48002-0)

value: Somatic (LOINC#LA6684-0)