HL7 Czech Lab Epidemiology Guide
0.0.1 - ci-build
HL7 Czech Lab Epidemiology Guide
0.0.1 - ci-build
HL7 Czech Lab Epidemiology Guide, published by HL7 Czech Republic. This guide is not an authorized publication; it is the continuous build for version 0.0.1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7-cz/lab-epi/ and changes regularly. See the Directory of published versions
| Draft as of 2025-12-19 |
<ConceptMap xmlns="http://hl7.org/fhir">
<id value="SLRBodyEn-to-CZLab"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: ConceptMap SLRBodyEn-to-CZLab</b></p><a name="SLRBodyEn-to-CZLab"> </a><a name="hcSLRBodyEn-to-CZLab"> </a><p>Mapping from https://example.org/fhir/StructureDefinition/SLRBodyEn to https://example.org/fhir/ImplementationGuide/cz-lab-message</p><br/><p><b>Group 1 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href="StructureDefinition-cz-lab-servicerequest.html">ServiceRequest – CZ Lab Order (message context)</a></p><table class="grid"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td><td><b>Comment</b></td></tr><tr><td>SLRBodyEn.body.order.identifier (Order number)</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td>ServiceRequest.identifier</td><td/></tr><tr><td>SLRBodyEn.body.order.reason (Order reason (diagnosis))</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td>ServiceRequest.reasonCode</td><td>ICD-10 (MKN-10) where applicable.</td></tr></table><hr/><p><b>Group 2 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href="StructureDefinition-cz-labreport-dr.html">DiagnosticReport – CZ Lab Report (message payload)</a></p><table class="grid"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td><td><b>Comment</b></td></tr><tr><td>SLRBodyEn.body.order (Order)</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto" title="relatedto">is related to</a></td><td>DiagnosticReport.basedOn</td><td>Reference(ServiceRequest).</td></tr></table><hr/><p><b>Group 3 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href="StructureDefinition-cz-lab-specimen.html">Specimen – CZ Lab</a></p><table class="grid"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>SLRBodyEn.body.specimen.sampleNumber (Sample identifier)</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td>Specimen.identifier</td></tr><tr><td>SLRBodyEn.body.specimen.collectionDate (Collection date/time)</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td>Specimen.collection.collectedDateTime</td></tr><tr><td>SLRBodyEn.body.specimen.material (Material (Specimen type))</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td>Specimen.type</td></tr></table><hr/><p><b>Group 4 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href="StructureDefinition-cz-labreport-dr.html">DiagnosticReport – CZ Lab Report (message payload)</a></p><table class="grid"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>SLRBodyEn.body.specimen (Specimen info)</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto" title="relatedto">is related to</a></td><td>DiagnosticReport.specimen</td></tr></table><hr/><p><b>Group 5 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href="StructureDefinition-cz-labresult-obs.html">Observation – CZ Lab Result (qual/quant, AST)</a></p><table class="grid"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>SLRBodyEn.body.specimen (Specimen info)</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto" title="relatedto">is related to</a></td><td>Observation.specimen</td></tr></table><hr/><p><b>Group 6 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href="StructureDefinition-cz-labresult-obs.html">Observation – CZ Lab Result (qual/quant, AST)</a></p><table class="grid"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td><td><b>Comment</b></td></tr><tr><td>SLRBodyEn.body.result.examDate (Examination date/time)</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td>Observation.effectiveDateTime</td><td/></tr><tr><td>SLRBodyEn.body.result.method (Method)</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto" title="relatedto">is related to</a></td><td>Observation.method</td><td/></tr><tr><td>SLRBodyEn.body.result.analyteOrAgent (Analyte / Agent)</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td>Observation.code</td><td>Tested analyte/agent (e.g., detection of pathogen).</td></tr><tr><td>SLRBodyEn.body.result.qualitativeResult (Qualitative result)</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td>Observation.valueCodeableConcept</td><td/></tr><tr><td>SLRBodyEn.body.result.quantitativeResult.value (Quantitative value)</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td>Observation.valueQuantity</td><td>Use UCUM units.</td></tr><tr><td>SLRBodyEn.body.result.quantitativeResult.unit (Unit (UCUM))</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto" title="relatedto">is related to</a></td><td>Observation.valueQuantity.unit</td><td/></tr><tr><td>SLRBodyEn.body.result.cutOff (Cut-off)</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto" title="relatedto">is related to</a></td><td>Observation.referenceRange</td><td>Model cut-off in referenceRange.low/high.</td></tr><tr><td>SLRBodyEn.body.result.antibiotic (Antibiotic susceptibility (S/I/R))</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto" title="relatedto">is related to</a></td><td>Observation</td><td>Model as multiple Observations (code=susceptibility test, value=S/I/R).</td></tr></table><hr/><p><b>Group 7 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href="StructureDefinition-cz-labreport-dr.html">DiagnosticReport – CZ Lab Report (message payload)</a></p><table class="grid"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>SLRBodyEn.body.result (Results)</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto" title="relatedto">is related to</a></td><td>DiagnosticReport.result</td></tr></table><hr/><p><b>Group 8 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href="StructureDefinition-cz-lab-medicationstatement.html">MedicationStatement – ATB/ATV před odběrem</a></p><table class="grid"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td><td><b>Comment</b></td></tr><tr><td>SLRBodyEn.body.clinicalInformation.priorTherapy (Antiviral/antibiotic therapy before collection)</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto" title="relatedto">is related to</a></td><td>MedicationStatement</td><td>Use adherence/effective[x]/medicationCodeableConcept (SÚKL).</td></tr></table><hr/><p><b>Group 9 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href="StructureDefinition-cz-lab-patient.html">Patient – CZ Lab (RID)</a></p><table class="grid"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td><td><b>Comment</b></td></tr><tr><td>SLRBodyEn.body.clinicalInformation.symptomOnset (Symptom onset date)</td><td colspan="2" style="background-color: #efefef">(not mapped)</td><td style="background-color: #efefef">Prefer Condition.onsetDateTime or a dedicated Observation; extension here only if required.</td></tr></table><hr/><p><b>Group 10 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href="StructureDefinition-cz-lab-organization.html">Organization – CZ Lab (IČO/PCZ/ICP)</a></p><table class="grid"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>SLRBodyEn.body.laboratory.organizationIdentifiers (Lab organization IČO/PCZ/ICP)</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td>Organization.identifier</td></tr></table><hr/><p><b>Group 11 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href="StructureDefinition-cz-labreport-dr.html">DiagnosticReport – CZ Lab Report (message payload)</a></p><table class="grid"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>SLRBodyEn.body.laboratory (Performing laboratory)</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto" title="relatedto">is related to</a></td><td>DiagnosticReport.performer</td></tr></table><hr/><p><b>Group 12 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href="StructureDefinition-cz-labreport-dr.html">DiagnosticReport – CZ Lab Report (message payload)</a></p><table class="grid"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>SLRBodyEn.body.presentedForm (Presented form (PDF, etc.))</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto" title="relatedto">is related to</a></td><td>DiagnosticReport.presentedForm</td></tr><tr><td>SLRBodyEn.body.attachments (Additional attachments)</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto" title="relatedto">is related to</a></td><td>DiagnosticReport.media.link.content.attachment</td></tr></table></div>
</text>
<url value="https://hl7.cz/fhir/lab-epi/ConceptMap/SLRBodyEn-to-CZLab"/>
<version value="0.0.1"/>
<name value="SLRBodyEnToCZLab"/>
<title value="SLR Body (EN) to CZ Lab (message) mapping"/>
<status value="draft"/>
<experimental value="true"/>
<date value="2025-12-19T07:33:21+00:00"/>
<publisher value="HL7 Czech Republic"/>
<contact>
<name value="HL7 Czech Republic"/>
<telecom>
<system value="url"/>
<value value="https://www.hl7.cz/"/>
</telecom>
</contact>
<description
value="Maps SLR Body logical model to CZ Lab message profiles"/>
<jurisdiction>
<coding>
<system value="urn:iso:std:iso:3166"/>
<code value="CZ"/>
<display value="Czechia"/>
</coding>
</jurisdiction>
<purpose
value="Shows how body data elements map to ServiceRequest/Specimen/DiagnosticReport/Observation/etc."/>
<sourceUri value="https://example.org/fhir/StructureDefinition/SLRBodyEn"/>
<targetUri
value="https://example.org/fhir/ImplementationGuide/cz-lab-message"/>
<group>
<source value="https://example.org/fhir/StructureDefinition/SLRBodyEn"/>
<target
value="https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-lab-servicerequest"/>
<element>
<code value="SLRBodyEn.body.order.identifier"/>
<display value="Order number"/>
<target>
<code value="ServiceRequest.identifier"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="SLRBodyEn.body.order.reason"/>
<display value="Order reason (diagnosis)"/>
<target>
<code value="ServiceRequest.reasonCode"/>
<equivalence value="equivalent"/>
<comment value="ICD-10 (MKN-10) where applicable."/>
</target>
</element>
</group>
<group>
<source value="https://example.org/fhir/StructureDefinition/SLRBodyEn"/>
<target
value="https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-labreport-dr"/>
<element>
<code value="SLRBodyEn.body.order"/>
<display value="Order"/>
<target>
<code value="DiagnosticReport.basedOn"/>
<equivalence value="relatedto"/>
<comment value="Reference(ServiceRequest)."/>
</target>
</element>
</group>
<group>
<source value="https://example.org/fhir/StructureDefinition/SLRBodyEn"/>
<target
value="https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-lab-specimen"/>
<element>
<code value="SLRBodyEn.body.specimen.sampleNumber"/>
<display value="Sample identifier"/>
<target>
<code value="Specimen.identifier"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="SLRBodyEn.body.specimen.collectionDate"/>
<display value="Collection date/time"/>
<target>
<code value="Specimen.collection.collectedDateTime"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="SLRBodyEn.body.specimen.material"/>
<display value="Material (Specimen type)"/>
<target>
<code value="Specimen.type"/>
<equivalence value="equivalent"/>
</target>
</element>
</group>
<group>
<source value="https://example.org/fhir/StructureDefinition/SLRBodyEn"/>
<target
value="https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-labreport-dr"/>
<element>
<code value="SLRBodyEn.body.specimen"/>
<display value="Specimen info"/>
<target>
<code value="DiagnosticReport.specimen"/>
<equivalence value="relatedto"/>
</target>
</element>
</group>
<group>
<source value="https://example.org/fhir/StructureDefinition/SLRBodyEn"/>
<target
value="https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-labresult-obs"/>
<element>
<code value="SLRBodyEn.body.specimen"/>
<display value="Specimen info"/>
<target>
<code value="Observation.specimen"/>
<equivalence value="relatedto"/>
</target>
</element>
</group>
<group>
<source value="https://example.org/fhir/StructureDefinition/SLRBodyEn"/>
<target
value="https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-labresult-obs"/>
<element>
<code value="SLRBodyEn.body.result.examDate"/>
<display value="Examination date/time"/>
<target>
<code value="Observation.effectiveDateTime"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="SLRBodyEn.body.result.method"/>
<display value="Method"/>
<target>
<code value="Observation.method"/>
<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="SLRBodyEn.body.result.analyteOrAgent"/>
<display value="Analyte / Agent"/>
<target>
<code value="Observation.code"/>
<equivalence value="equivalent"/>
<comment value="Tested analyte/agent (e.g., detection of pathogen)."/>
</target>
</element>
<element>
<code value="SLRBodyEn.body.result.qualitativeResult"/>
<display value="Qualitative result"/>
<target>
<code value="Observation.valueCodeableConcept"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="SLRBodyEn.body.result.quantitativeResult.value"/>
<display value="Quantitative value"/>
<target>
<code value="Observation.valueQuantity"/>
<equivalence value="equivalent"/>
<comment value="Use UCUM units."/>
</target>
</element>
<element>
<code value="SLRBodyEn.body.result.quantitativeResult.unit"/>
<display value="Unit (UCUM)"/>
<target>
<code value="Observation.valueQuantity.unit"/>
<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="SLRBodyEn.body.result.cutOff"/>
<display value="Cut-off"/>
<target>
<code value="Observation.referenceRange"/>
<equivalence value="relatedto"/>
<comment value="Model cut-off in referenceRange.low/high."/>
</target>
</element>
<element>
<code value="SLRBodyEn.body.result.antibiotic"/>
<display value="Antibiotic susceptibility (S/I/R)"/>
<target>
<code value="Observation"/>
<equivalence value="relatedto"/>
<comment
value="Model as multiple Observations (code=susceptibility test, value=S/I/R)."/>
</target>
</element>
</group>
<group>
<source value="https://example.org/fhir/StructureDefinition/SLRBodyEn"/>
<target
value="https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-labreport-dr"/>
<element>
<code value="SLRBodyEn.body.result"/>
<display value="Results"/>
<target>
<code value="DiagnosticReport.result"/>
<equivalence value="relatedto"/>
</target>
</element>
</group>
<group>
<source value="https://example.org/fhir/StructureDefinition/SLRBodyEn"/>
<target
value="https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-lab-medicationstatement"/>
<element>
<code value="SLRBodyEn.body.clinicalInformation.priorTherapy"/>
<display value="Antiviral/antibiotic therapy before collection"/>
<target>
<code value="MedicationStatement"/>
<equivalence value="relatedto"/>
<comment
value="Use adherence/effective[x]/medicationCodeableConcept (SÚKL)."/>
</target>
</element>
</group>
<group>
<source value="https://example.org/fhir/StructureDefinition/SLRBodyEn"/>
<target
value="https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-lab-patient"/>
<element>
<code value="SLRBodyEn.body.clinicalInformation.symptomOnset"/>
<display value="Symptom onset date"/>
<target>
<equivalence value="unmatched"/>
<comment
value="Prefer Condition.onsetDateTime or a dedicated Observation; extension here only if required."/>
</target>
</element>
</group>
<group>
<source value="https://example.org/fhir/StructureDefinition/SLRBodyEn"/>
<target
value="https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-lab-organization"/>
<element>
<code value="SLRBodyEn.body.laboratory.organizationIdentifiers"/>
<display value="Lab organization IČO/PCZ/ICP"/>
<target>
<code value="Organization.identifier"/>
<equivalence value="equivalent"/>
</target>
</element>
</group>
<group>
<source value="https://example.org/fhir/StructureDefinition/SLRBodyEn"/>
<target
value="https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-labreport-dr"/>
<element>
<code value="SLRBodyEn.body.laboratory"/>
<display value="Performing laboratory"/>
<target>
<code value="DiagnosticReport.performer"/>
<equivalence value="relatedto"/>
</target>
</element>
</group>
<group>
<source value="https://example.org/fhir/StructureDefinition/SLRBodyEn"/>
<target
value="https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-labreport-dr"/>
<element>
<code value="SLRBodyEn.body.presentedForm"/>
<display value="Presented form (PDF, etc.)"/>
<target>
<code value="DiagnosticReport.presentedForm"/>
<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="SLRBodyEn.body.attachments"/>
<display value="Additional attachments"/>
<target>
<code value="DiagnosticReport.media.link.content.attachment"/>
<equivalence value="relatedto"/>
</target>
</element>
</group>
</ConceptMap>