Australian Digital Health Agency FHIR Implementation Guide
1.2.0-ci-build - draft Australia flag

Australian Digital Health Agency FHIR Implementation Guide, published by Australian Digital Health Agency. This guide is not an authorized publication; it is the continuous build for version 1.2.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/AuDigitalHealth/ci-fhir-r4/ and changes regularly. See the Directory of published versions

Example Bundle: Pathology Report Document Bundle SARS-CoV-2 (COVID-19) PCR for Mrs Anne Thompson

Document Details

Generated Narrative: Bundle SARS-CoV-2 (COVID-19) PCR for Mrs. Anne THOMPSON


Document Subject

Generated Narrative: Patient mhr-anne-thompson

Mrs. Anne Thompson(official) Female, DoB: 1978-10-11 ( IHI: AustalianIHI#8003608000228445)


Other Id:Medical record number/123456
Language:Yugambal
Australian Indigenous Statusaustralian-indigenous-status-1 1: Aboriginal but not Torres Strait Islander origin

Document Content

Pathology

Report Details
Report Date/Time Report Name Report Status Lab No Consultant
15-Feb-2021 20:00 SARS-CoV-2 (COVID-19) PCR for Mrs. Anne THOMPSON Final DOO3Q978 Dr. Adam MEYER (Microbiologist) (07) 7010 3453
SARS-Cov-2 (COVID-19) PCR
Specimen Type Primary Specimen Site Collection Setting Date Collected Time Collected Test Name Result Diagnostic Service
Swab Nasopharyngeal COVID HSC Assessment Clinic 15-Feb-2021 12:00 SARS-CoV-2 PCR Not Detected Microbiology
Comments
Doomben Pathology QLD NATA/RCPA accreditation does not cover the SARS-CoV-2 (COVID-19) PCR test.
This test is currently under evaluation and has not been fully validated. Failure to detect organism-specific nucleic acids does not exclude the presence of disease due to this agent.

Link to PDF document


Additional Resources Included in Document


Entry 1 - fullUrl = urn:uuid:ddba0aed-3f03-429e-baa1-d5d465cc1d00

Resource Composition:

Generated Narrative: Composition 1bf8dc5a-f11c-4417-a19d-39826e487cf4

Language: en-AU

identifier: URI/urn:uuid:9cb8267f-fcfd-4341-bc89-e53e4ce9646c

status: Final

type: Pathology Report

category: Pathology Report

date: 2021-02-15 20:00:00+1000

author: Bundle: identifier = UUID:b487469d-810c-40ae-b5a9-c0beb9001c9f; type = document; timestamp = 2022-03-17 11:46:00+1000

title: SARS-CoV-2 (COVID-19) PCR for Mrs. Anne THOMPSON

custodian: Bundle: identifier = UUID:b487469d-810c-40ae-b5a9-c0beb9001c9f; type = document; timestamp = 2022-03-17 11:46:00+1000


Entry 2 - fullUrl = urn:uuid:a790bf00-6c3f-4acd-b786-b5b713f67ce2

Resource DiagnosticReport:

Pathology Report
15 Feb 2021 12:00
Mrs. Anne THOMPSON DoB 11 OCT 1978 GENDER Female IHI 8003 6080 0022 8437 MRN 123456 INDIGENOUS STATUS Aboriginal but not Torres Strait Islander origin
Request Details
Dr Greg Algregster (Algregster Medical Center QLD)
Order Identifier: 123451
Test Ordered: 2019-Novel Coronavirus PCR
Author
Dr Adam Meyer (Microbiologist) (HPI-I: 8003619900041630)
75 Hampden St, DOOMBEN, QLD, 4007
(07) 7010 3453
Doomben Pathology QLD (HPI-O: 8003623233366565) (NATA: 100101)
75 Hampden St, DOOMBEN, QLD, 4007
(07) 5550 3427 info@doombenpathlabs.example.com
Report Details
Report Date/Time: 15 Feb 2021 20:00
Report Name: SARS-Cov-2 (COVID-19) PCR for Mrs. Anne THOMPSON
Lab No: DOO3Q978
Report Status: Final
Diagnostice Service(s): Microbiology

Test Results

Diagnostic Service Test Name Result Collection Date/Time Specimen Type Primary Specimen Site Collection Setting
Microbiology 2019-Novel Coronavirus PCR Not Detected 16 Mar 2020 10:40:00 Swab Nasopharyngeal COVID HSC Assessment Clinic

Link to PDF document


Entry 3 - fullUrl = urn:uuid:928aec02-866c-4b8b-a0fe-75e640a44d73

Resource Observation:

Generated Narrative: Observation covid-01

status: Final

category: Laboratory, Microbiology

code: 2019-Novel Coronavirus PCR

subject: Bundle: identifier = UUID:b487469d-810c-40ae-b5a9-c0beb9001c9f; type = document; timestamp = 2022-03-17 11:46:00+1000

effective: 2021-02-15 12:00:00+1000

performer: Bundle: identifier = UUID:b487469d-810c-40ae-b5a9-c0beb9001c9f; type = document; timestamp = 2022-03-17 11:46:00+1000

value: Not detected

note: Doomben Pathology QLD NATA/RCPA accreditation does not cover the SARS-CoV-2 (COVID-19) PCR test., This test is currently under evaluation and has not been fully validated. Failure to detect organism-specific nucleic acids does not exclude the presence of disease due to this agent.

specimen: Bundle: identifier = UUID:b487469d-810c-40ae-b5a9-c0beb9001c9f; type = document; timestamp = 2022-03-17 11:46:00+1000


Entry 4 - fullUrl = urn:uuid:093f1be9-157d-4602-aa31-f8b658036893

Resource Specimen:

Generated Narrative: Specimen naso-swab-01

type: Swab

subject: Bundle: identifier = UUID:b487469d-810c-40ae-b5a9-c0beb9001c9f; type = document; timestamp = 2022-03-17 11:46:00+1000

Collections

-Collected[x]BodySite
*2021-02-15 12:00:00+1000No display for Specimen.collection.bodySite (concept: Nasopharyngeal structure)

note: Collection Setting COVID HSC Assessment Clinic


Entry 5 - fullUrl = urn:uuid:dbd0afa4-8c3a-48cd-9fc9-72cf2f06adae

Resource ServiceRequest:

Generated Narrative: ServiceRequest order-covid-01

identifier: Placer Identifier/123451

status: Completed

intent: Order

category: Pathology service, Microbiology

code: No display for ServiceRequest.code (concept: )

subject: Bundle: identifier = UUID:b487469d-810c-40ae-b5a9-c0beb9001c9f; type = document; timestamp = 2022-03-17 11:46:00+1000

requester: Dr Greg Algregster (Algregster Medical Center QLD)


Entry 6 - fullUrl = urn:uuid:bccc1479-bcd8-4478-a433-b271576003e3

Resource Patient:

Generated Narrative: Patient mhr-anne-thompson

Mrs. Anne Thompson(official) Female, DoB: 1978-10-11 ( IHI: AustalianIHI#8003608000228445)


Other Id:Medical record number/123456
Language:Yugambal
Australian Indigenous Statusaustralian-indigenous-status-1 1: Aboriginal but not Torres Strait Islander origin

Entry 7 - fullUrl = urn:uuid:0a8c38d1-b44c-4996-ae39-6a1c05a3489c

Resource PractitionerRole:

Generated Narrative: PractitionerRole meyer-adam-microbiologist

identifier: HPI-I/8003619900041630

practitioner: Bundle: identifier = UUID:b487469d-810c-40ae-b5a9-c0beb9001c9f; type = document; timestamp = 2022-03-17 11:46:00+1000

organization: Bundle: identifier = UUID:b487469d-810c-40ae-b5a9-c0beb9001c9f; type = document; timestamp = 2022-03-17 11:46:00+1000

code: Microbiologist


Entry 8 - fullUrl = urn:uuid:f4c7c72e-c8fd-40a4-94e2-44e293db0ae2

Resource Practitioner:

Generated Narrative: Practitioner f4c7c72e-c8fd-40a4-94e2-44e293db0ae2

name: Adam MEYER

address: 75 Hampden St DOOMBEN QLD 4007 AU (work)


Entry 9 - fullUrl = urn:uuid:b56e2c36-36a7-4907-9751-1fdb438ca860

Resource Organization:

Generated Narrative: Organization b56e2c36-36a7-4907-9751-1fdb438ca860

identifier: HPI-O/8003623233366565, NATA Accreditation Number/100101

name: Doomben Pathology QLD

contact

telecom: info@doombenpathlabs.example.com, ph: (07) 5550 3427(Work)

address: 75 Hampden St DOOMBEN QLD 4007 AU (work)