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| Responsible Owner: Biomedical Research and Regulation Work Group | Standards Status: Informative | Compartments: No defined compartments |
Raw XML (canonical form + also see XML Format Specification)
Protein substance: Trastuzumab — humanised IgG1 monoclonal antibody targeting HER2 (id = "trastuzumab")
<?xml version="1.0" encoding="UTF-8"?> <!-- Example: Trastuzumab (humanised monoclonal antibody against HER2). Demonstrates the new SubstanceDefinition protein backbones added for FHIR-57660: .protein.subunit (heavy + light chains), disulfide linkages, N/C-terminal modifications, .protein.gene with humanised mouse origin, and .relationship typed as TherapeuticTarget (HER2). --><SubstanceDefinition xmlns="http://hl7.org/fhir"> <id value="trastuzumab"/> <identifier> <system value="http://example.europa.eu/fhir/SMSId"/> <value value="TRAS9123H"/> </identifier> <status> <coding> <system value="http://hl7.org/fhir/publication-status"/> <code value="active"/> <display value="Active"/> </coding> </status> <classification> <coding> <system value="http://example.europa.eu/fhir/SubstanceType"/> <code value="protein"/> <display value="Protein"/> </coding> </classification> <domain> <coding> <system value="http://example.europa.eu/fhir/Domain"/> <code value="human"/> <display value="Human use"/> </coding> </domain> <description value="Trastuzumab — humanised IgG1 monoclonal antibody targeting the human epidermal growth factor receptor 2 (HER2/ErbB2). Variable regions derived from murine antibody 4D5, grafted onto human IgG1 framework. Produced in Chinese hamster ovary (CHO) cells."/> <code> <code> <coding> <system value="http://example.europa.eu/fhir/Substance"/> <code value="TRAS9123H"/> </coding> </code> </code> <name> <name value="Trastuzumab"/> <preferred value="true"/> <language> <coding> <system value="urn:ietf:bcp:47"/> <code value="en"/> <display value="English"/> </coding> </language> <official> <authority> <coding> <system value="http://hl7.org/fhir/substance-name-authority"/> <code value="INN"/> <display value="INN"/> </coding> </authority> <status> <coding> <system value="http://hl7.org/fhir/publication-status"/> <code value="active"/> <display value="Active"/> </coding> </status> </official> </name> <name> <name value="Herceptin"/> <preferred value="false"/> </name> <protein> <sequenceType> <coding> <system value="http://hl7.org/fhir/substance-sequence-type"/> <code value="complete"/> <display value="Complete"/> </coding> </sequenceType> <numberOfSubunits value="2"/> <disulfideLinkage value="HC22-HC96; HC144-HC200; HC222-LC214; HC228-HC228'; HC231-HC231'; HC265-HC325; HC371-HC429"/> <subunit> <subunit value="1"/> <sequence value="EVQLVESGGGLVQPGGSLRLSCAASGFNIKDTYIHWVRQAPGKGLEWVARIYPTNGYTRYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAV YYCSRWGGDGFYAMDYWGQGTLVTVSS..."/> <length value="450"/> <nTerminalModification> <concept> <coding> <system value="http://example.europa.eu/fhir/Modification"/> <code value="pyroglutamate"/> <display value="Pyroglutamic acid (pE)"/> </coding> </concept> </nTerminalModification> <cTerminalModification> <concept> <coding> <system value="http://example.europa.eu/fhir/Modification"/> <code value="lysine-clipped"/> <display value="C-terminal lysine clipping"/> </coding> </concept> </cTerminalModification> </subunit> <subunit> <subunit value="2"/> <sequence value="DIQMTQSPSSLSASVGDRVTITCRASQDVNTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQHYT TPPTFGQGTKVEIK..."/> <length value="214"/> </subunit> <gene> <sequenceOrigin> <coding> <system value="http://hl7.org/fhir/gene-sequence-origin"/> <code value="humanised-mouse"/> <display value="Humanised mouse"/> </coding> </sequenceOrigin> <gene> <concept> <coding> <system value="http://www.genenames.org"/> <code value="IGHG1"/> <display value="Immunoglobulin heavy constant gamma 1"/> </coding> </concept> </gene> </gene> </protein> <relationship> <substanceDefinitionReference> <reference value="SubstanceDefinition/her2"/> <display value="Receptor tyrosine-protein kinase erbB-2 (HER2)"/> </substanceDefinitionReference> <type> <coding> <system value="http://hl7.org/fhir/substance-relationship-type"/> <code value="TherapeuticTarget"/> <display value="Therapeutic target"/> </coding> </type> <interaction> <coding> <system value="http://hl7.org/fhir/substance-interaction-type"/> <code value="binding"/> <display value="Binding"/> </coding> </interaction> <measurementType> <coding> <system value="http://hl7.org/fhir/substance-measurement-type"/> <code value="kd"/> <display value="Kd"/> </coding> </measurementType> <amountQuantity> <value value="0.1"/> <unit value="nM"/> <system value="http://unitsofmeasure.org"/> <code value="nmol/L"/> </amountQuantity> </relationship> </SubstanceDefinition>
Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.
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