Phenomics Exchange for Research and Diagnostics
0.1.0 - ci-build
Phenomics Exchange for Research and Diagnostics
0.1.0 - ci-build
Phenomics Exchange for Research and Diagnostics, published by HL7 International / Clinical Interoperability Council. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/phenomics-exchange-ig/ and changes regularly. See the Directory of published versions
| Official URL: http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/DiagnosticMarker | Version: 0.1.0 | |||
| Draft as of 2020-02-14 | Computable Name: DiagnosticMarker | |||
Copyright/Legal: Global Alliance for Genomics and Health |
||||
Clinically relevant biomarkers. Most of the assays such as immunohistochemistry (IHC) are covered by the NCIT under the sub-hierarchy NCIT:C36292 (Laboratory Test Result), e.g. NCIT:C68748 (HER2/Neu Positive), NCIT:C131711 (Human Papillomavirus-18 Positive).
Context of Use
This extension may be used on the following element(s):
Usage info
Usage:
Description of Profiles, Differentials, Snapshots, and how the XML and JSON presentations work.
This structure is derived from Extension
Summary
Simple Extension of type CodeableConcept: Clinically relevant biomarkers. Most of the assays such as immunohistochemistry (IHC) are covered by the NCIT under the sub-hierarchy NCIT:C36292 (Laboratory Test Result), e.g. NCIT:C68748 (HER2/Neu Positive), NCIT:C131711 (Human Papillomavirus-18 Positive).
This structure is derived from Extension
| Name | Flags | Card. | Type | Description & Constraints |
|---|---|---|---|---|
  Extension | 0..* | Extension | Diagnostic Marker | |
  extension | 0..0 | |||
| url | 1..1 | uri | "http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/DiagnosticMarker" | |
  Slices for value[x] | 0..1 | CodeableConcept | Value of extension Slice: Unordered, Open by type:$this | |
   value[x]:valueCodeableConcept | 0..1 | CodeableConcept | Value of extension Binding: Diagnostic Marker (example) | |
| Documentation for this format | ||||
| Name | Flags | Card. | Type | Description & Constraints |
|---|---|---|---|---|
| Extension | 0..* | Extension | Diagnostic Marker | |
 id | 0..1 | string | Unique id for inter-element referencing | |
| extension | 0..0 | |||
| url | 1..1 | uri | "http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/DiagnosticMarker" | |
| Slices for value[x] | 0..1 | CodeableConcept | Value of extension Slice: Unordered, Closed by type:$this | |
| value[x]:valueCodeableConcept | 0..1 | CodeableConcept | Value of extension Binding: Diagnostic Marker (example) | |
| Documentation for this format | ||||
This structure is derived from Extension
Summary
Simple Extension of type CodeableConcept: Clinically relevant biomarkers. Most of the assays such as immunohistochemistry (IHC) are covered by the NCIT under the sub-hierarchy NCIT:C36292 (Laboratory Test Result), e.g. NCIT:C68748 (HER2/Neu Positive), NCIT:C131711 (Human Papillomavirus-18 Positive).
Differential View
This structure is derived from Extension
| Name | Flags | Card. | Type | Description & Constraints |
|---|---|---|---|---|
| Extension | 0..* | Extension | Diagnostic Marker | |
| extension | 0..0 | |||
| url | 1..1 | uri | "http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/DiagnosticMarker" | |
| Slices for value[x] | 0..1 | CodeableConcept | Value of extension Slice: Unordered, Open by type:$this | |
| value[x]:valueCodeableConcept | 0..1 | CodeableConcept | Value of extension Binding: Diagnostic Marker (example) | |
| Documentation for this format | ||||
Snapshot View
| Name | Flags | Card. | Type | Description & Constraints |
|---|---|---|---|---|
| Extension | 0..* | Extension | Diagnostic Marker | |
| id | 0..1 | string | Unique id for inter-element referencing | |
| extension | 0..0 | |||
| url | 1..1 | uri | "http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/DiagnosticMarker" | |
| Slices for value[x] | 0..1 | CodeableConcept | Value of extension Slice: Unordered, Closed by type:$this | |
| value[x]:valueCodeableConcept | 0..1 | CodeableConcept | Value of extension Binding: Diagnostic Marker (example) | |
| Documentation for this format | ||||
Other representations of profile: CSV, Excel, Schematron
| Path | Conformance | ValueSet | URI |
| Extension.value[x]:valueCodeableConcept | example | DiagnosticMarkerhttp://hl7.org/fhir/uv/phenomics-exchange/ValueSet/DiagnosticMarkerfrom this IG |
| Id | Grade | Path(s) | Details | Requirements |
| ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) | |
| ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both : extension.exists() != value.exists() |
IG © 2021+ HL7 International / Clinical Interoperability Council. Package hl7.fhir.uv.phenomics-exchange#0.1.0 based on FHIR 4.0.1. Generated 2024-01-17
Links: Table of Contents |
QA Report
| Version History |
|
Propose a change