| Path | Severity | Message |
| Bundle.entry[0].resource/*Composition/PhenopacketCompositionExample01*/.section[0].code (l26/c14) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| Bundle.entry[0].resource/*Composition/PhenopacketCompositionExample01*/.section[1].code (l42/c14) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| Bundle.entry[0].resource/*Composition/PhenopacketCompositionExample01*/.section[2].code (l58/c14) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| Bundle.entry[0].resource/*Composition/PhenopacketCompositionExample01*/.section[3].code (l74/c14) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| Bundle.entry[0].resource/*Composition/PhenopacketCompositionExample01*/.section[4].code (l90/c14) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| Bundle.entry[0].resource/*Composition/PhenopacketCompositionExample01*/.subject (l120/c10) | error | Unable to find a match for profile Patient/example-patient among choices: http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/Individual |
| Bundle.entry[0].resource/*Composition/PhenopacketCompositionExample01*/.subject (l120/c10) | Slicing Information | Details for Patient/example-patient matching against profile http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/Individual|0.1.0 Show Reasoning - Bundle.entry[1].resource/*Patient/example-patient*/.communication[0].language.display: Wrong Display Name 'English (Region=United States)' for urn:ietf:bcp:47#en-US - should be one of 7 choices: 'English (United States)', 'English (United States)' (en), 'Engels (Verenigde Staten)' (nl), 'Английский (США)' (ru), '英语 （美国）' (zh), 'Englisch (USA)' (de) or 'Engelsk (Amerikansk)' (da) (for the language(s) '--')
|
| Bundle.entry[0].resource/*Composition/PhenopacketCompositionExample01*/.section[3].entry[0] (l83/c16) | error | Unable to find a match for profile DiagnosticReport/PhenopacketsGenomicInterpretationExample02 among choices: http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/phenopackets-genomic-interpretation |
| Bundle.entry[0].resource/*Composition/PhenopacketCompositionExample01*/.section[3].entry[0] (l83/c16) | Slicing Information | Details for DiagnosticReport/PhenopacketsGenomicInterpretationExample02 matching against profile http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/phenopackets-genomic-interpretation|0.1.0 Show Reasoning - Bundle.entry[7].resource/*DiagnosticReport/PhenopacketsGenomicInterpretationExample02*/.modifierExtension[0].value.ofType(CodeableConcept).coding[0]: A definition for CodeSystem 'http://phenopacket-schema.readthedocs.io/en/v2/genomic-interpretation.html#interpretationstatus' could not be found, so the code cannot be validated
, - Bundle.entry[7].resource/*DiagnosticReport/PhenopacketsGenomicInterpretationExample02*/.modifierExtension[0].value.ofType(CodeableConcept): None of the codings provided are in the value set 'Interpretation Status Value Set' (http://hl7.org/fhir/uv/phenomics-exchange/ValueSet/interpretationStatus-vs|0.1.0), and a coding from this value set is required) (codes = http://phenopacket-schema.readthedocs.io/en/v2/genomic-interpretation.html#interpretationstatus#0)
|
| Bundle.entry[1].resource/*Patient/example-patient*/.communication[0].language.display (l198/c14) | error | Wrong Display Name 'English (Region=United States)' for urn:ietf:bcp:47#en-US - should be one of 7 choices: 'English (United States)', 'English (United States)' (en), 'Engels (Verenigde Staten)' (nl), 'Английский (США)' (ru), '英语 （美国）' (zh), 'Englisch (USA)' (de) or 'Engelsk (Amerikansk)' (da) (for the language(s) '--') (from http://tx.fhir.org/r4, see log) |
| Bundle.entry[3].resource/*Observation/CHF-with-severity*/ (l236/c8) | warning | Best Practice Recommendation: In general, all observations should have a performer |
| Bundle.entry[3].resource/*Observation/CHF-with-severity*/.code.coding[0].system (l248/c10) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Bundle.entry[3].resource/*Observation/CHF-with-severity*/.subject (l245/c10) | Slicing Information | Details for Patient/example-patient matching against profile http://hl7.org/fhir/StructureDefinition/Patient|4.0.1 Show Reasoning - Bundle.entry[1].resource/*Patient/example-patient*/.communication[0].language.display: Wrong Display Name 'English (Region=United States)' for urn:ietf:bcp:47#en-US - should be one of 7 choices: 'English (United States)', 'English (United States)' (en), 'Engels (Verenigde Staten)' (nl), 'Английский (США)' (ru), '英语 （美国）' (zh), 'Englisch (USA)' (de) or 'Engelsk (Amerikansk)' (da) (for the language(s) '--')
|
| Bundle.entry[3].resource/*Observation/CHF-with-severity*/.component[0].code.coding[0].system (l269/c14) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Bundle.entry[3].resource/*Observation/CHF-with-severity*/.component[0].value.ofType(CodeableConcept).coding[0].system (l278/c14) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Bundle.entry[3].resource/*Observation/CHF-with-severity*/.component[0].value.ofType(CodeableConcept) (l278/c14) | warning | Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/phenomics-exchange/ValueSet/HpoSeverity|0.1.0' because the code system http://human-phenotype-ontology.org was not found |
| Bundle.entry[3].resource/*Observation/CHF-with-severity*/.component[0].value.ofType(CodeableConcept) (l278/c14) | warning | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/phenomics-exchange/ValueSet/HpoSeverity|0.1.0' because the code system http://human-phenotype-ontology.org was not found |
| Bundle.entry[4].resource/*Observation/thrombocytopenia*/ (l293/c8) | warning | Best Practice Recommendation: In general, all observations should have a subject |
| Bundle.entry[4].resource/*Observation/thrombocytopenia*/ (l293/c8) | warning | Best Practice Recommendation: In general, all observations should have a performer |
| Bundle.entry[5].resource/*Condition/CHF-stageIII*/.code.coding[0].system (l352/c10) | information | A definition for CodeSystem 'http://purl.obolibrary.org/obo/mondo.owl' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Bundle.entry[5].resource/*Condition/CHF-stageIII*/.subject (l361/c10) | Slicing Information | Details for Patient/example-patient matching against profile http://hl7.org/fhir/StructureDefinition/Patient|4.0.1 Show Reasoning - Bundle.entry[1].resource/*Patient/example-patient*/.communication[0].language.display: Wrong Display Name 'English (Region=United States)' for urn:ietf:bcp:47#en-US - should be one of 7 choices: 'English (United States)', 'English (United States)' (en), 'Engels (Verenigde Staten)' (nl), 'Английский (США)' (ru), '英语 （美国）' (zh), 'Englisch (USA)' (de) or 'Engelsk (Amerikansk)' (da) (for the language(s) '--')
|
| Bundle.entry[5].resource/*Condition/CHF-stageIII*/.stage[0].summary.coding[0] (l366/c14) | information | A definition for CodeSystem 'http://github.com/EBISPOT/efo' could not be found, so the code cannot be validated |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.extension[0].value.ofType(CodeableConcept).coding[0].code (l401/c14) | warning | Unknown Code 'NCIT_C39853' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.extension[0].value.ofType(CodeableConcept).coding[0].display (l401/c14) | warning | Wrong Display Name 'Infiltrating Urothelial Carcinoma' for http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#NCIT_C39853 - should be (for the language(s) '--') (from http://tx.fhir.org/r4) |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.extension[1].value.ofType(CodeableConcept).coding[0].code (l413/c14) | warning | Unknown Code 'NCIT_C84509' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.extension[1].value.ofType(CodeableConcept).coding[0].display (l413/c14) | warning | Wrong Display Name 'Primary Malignant Neoplasm' for http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#NCIT_C84509 - should be (for the language(s) '--') (from http://tx.fhir.org/r4) |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.extension[2].value.ofType(CodeableConcept).coding[0].code (l425/c14) | warning | Unknown Code 'NCIT_C36136' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.extension[2].value.ofType(CodeableConcept).coding[0].display (l425/c14) | warning | Wrong Display Name 'Grade 2 Lesion' for http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#NCIT_C36136 - should be (for the language(s) '--') (from http://tx.fhir.org/r4) |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.extension[3].value.ofType(CodeableConcept).coding[0].code (l437/c14) | warning | Unknown Code 'NCIT_C28054' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.extension[3].value.ofType(CodeableConcept).coding[0].display (l437/c14) | warning | Wrong Display Name 'Stage II' for http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#NCIT_C28054 - should be (for the language(s) '--') (from http://tx.fhir.org/r4) |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.extension[4].value.ofType(CodeableConcept).coding[0].code (l449/c14) | warning | Unknown Code 'NCIT_C48699' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.extension[4].value.ofType(CodeableConcept).coding[0].display (l449/c14) | warning | Wrong Display Name 'M0 Stage Finding' for http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#NCIT_C48699 - should be (for the language(s) '--') (from http://tx.fhir.org/r4) |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.extension[5].value.ofType(CodeableConcept).coding[0].system (l461/c14) | information | A definition for CodeSystem 'http://github.com/EBISPOT/efo' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.type.coding[0] (l484/c10) | information | A definition for CodeSystem 'http://github.com/EBISPOT/efo' could not be found, so the code cannot be validated |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.subject (l493/c10) | Slicing Information | Details for Patient/example-patient matching against profile http://hl7.org/fhir/StructureDefinition/Patient|4.0.1 Show Reasoning - Bundle.entry[1].resource/*Patient/example-patient*/.communication[0].language.display: Wrong Display Name 'English (Region=United States)' for urn:ietf:bcp:47#en-US - should be one of 7 choices: 'English (United States)', 'English (United States)' (en), 'Engels (Verenigde Staten)' (nl), 'Английский (США)' (ru), '英语 （美国）' (zh), 'Englisch (USA)' (de) or 'Engelsk (Amerikansk)' (da) (for the language(s) '--')
|
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.collection.bodySite.coding[0].system (l473/c12) | information | A definition for CodeSystem 'http://github.com/obophenotype/uberon' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.processing[0].procedure.coding[0].code (l503/c14) | warning | Unknown Code 'NCIT_C5189' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.processing[0].procedure.coding[0].display (l503/c14) | warning | Wrong Display Name 'Radical Cystoprostatectomy' for http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#NCIT_C5189 - should be (for the language(s) '--') (from http://tx.fhir.org/r4) |
| Bundle.entry[7].resource/*DiagnosticReport/PhenopacketsGenomicInterpretationExample02*/.modifierExtension[0].value.ofType(CodeableConcept).coding[0] (l530/c14) | error | A definition for CodeSystem 'http://phenopacket-schema.readthedocs.io/en/v2/genomic-interpretation.html#interpretationstatus' could not be found, so the code cannot be validated |
| Bundle.entry[7].resource/*DiagnosticReport/PhenopacketsGenomicInterpretationExample02*/.modifierExtension[0].value.ofType(CodeableConcept) (l530/c14) | warning | Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/phenomics-exchange/ValueSet/interpretationStatus-vs|0.1.0' because the code system http://phenopacket-schema.readthedocs.io/en/v2/genomic-interpretation.html#interpretationstatus was not found |
| Bundle.entry[7].resource/*DiagnosticReport/PhenopacketsGenomicInterpretationExample02*/.modifierExtension[0].value.ofType(CodeableConcept) (l530/c14) | error | None of the codings provided are in the value set 'Interpretation Status Value Set' (http://hl7.org/fhir/uv/phenomics-exchange/ValueSet/interpretationStatus-vs|0.1.0), and a coding from this value set is required) (codes = http://phenopacket-schema.readthedocs.io/en/v2/genomic-interpretation.html#interpretationstatus#0) |
| Bundle.entry[7].resource/*DiagnosticReport/PhenopacketsGenomicInterpretationExample02*/.code.coding[0].system (l582/c10) | information | A definition for CodeSystem 'http://loinc' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Bundle.entry[7].resource/*DiagnosticReport/PhenopacketsGenomicInterpretationExample02*/.code (l582/c10) | information | None of the codings provided are in the value set 'LOINC Diagnostic Report Codes' (http://hl7.org/fhir/ValueSet/report-codes|4.0.1), and a coding is recommended to come from this value set) (codes = http://loinc#123) |
| Bundle.entry[8].resource/*Observation/PhenopacketsVariantExample01*/ (l595/c8) | warning | Best Practice Recommendation: In general, all observations should have a subject |
| Bundle.entry[8].resource/*Observation/PhenopacketsVariantExample01*/ (l595/c8) | warning | Best Practice Recommendation: In general, all observations should have a performer |
| Bundle.entry[8].resource/*Observation/PhenopacketsVariantExample01*/ (l595/c8) | warning | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| Bundle (l1/c2) | information | Can't find 'Patient/phenopacketPatientExample01' in the bundle (Bundle.entry[7].resource.subject) |
| Bundle (l1/c2) | information | Can't find 'Specimen/phenopacketSpecimenExample01' in the bundle (Bundle.entry[7].resource.specimen[0]) |
| Bundle.entry[3].resource (l236/c8) | warning | Best Practice Recommendation: In general, all observations should have a performer |
| Bundle.entry[4].resource (l293/c8) | warning | Best Practice Recommendation: In general, all observations should have a subject |
| Bundle.entry[4].resource (l293/c8) | warning | Best Practice Recommendation: In general, all observations should have a performer |
| Bundle.entry[8].resource (l595/c8) | warning | Best Practice Recommendation: In general, all observations should have a subject |
| Bundle.entry[8].resource (l595/c8) | warning | Best Practice Recommendation: In general, all observations should have a performer |
| Bundle.entry[8].resource (l595/c8) | warning | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| Path | Severity | Message |
| Observation.code.coding[0].system (l5/c4) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[0].code.coding[0].system (l18/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[0].value.ofType(CodeableConcept).coding[0].system (l27/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[1].code.coding[0].system (l38/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[1].value.ofType(CodeableConcept).coding[0].system (l47/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[2].code.coding[0].system (l58/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[2].value.ofType(CodeableConcept).coding[0].system (l67/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[3].code.coding[0].system (l78/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[3].value.ofType(CodeableConcept).coding[0].system (l87/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[4].code.coding[0].system (l98/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[4].value.ofType(CodeableConcept).coding[0].system (l107/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[5].code.coding[0].system (l118/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[5].value.ofType(CodeableConcept).coding[0].system (l127/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[6].code.coding[0].system (l138/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[6].value.ofType(Quantity) (l147/c8) | information | A definition for CodeSystem 'http://some/unit/system' could not be found, so the code cannot be validated |
| Observation.component[7].code.coding[0].system (l155/c8) | information | A definition for CodeSystem 'http://github.com/phenopackets/core-ig/CodeSystem/OTHER' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[7].value.ofType(CodeableConcept).coding[0] (l164/c8) | information | A definition for CodeSystem 'http://github.com/phenopackets/core-ig/CodeSystem/OTHER' could not be found, so the code cannot be validated |
| Observation (l1/c2) | warning | Best Practice Recommendation: In general, all observations should have a subject |
| Observation (l1/c2) | warning | Best Practice Recommendation: In general, all observations should have a performer |
| Observation (l1/c2) | warning | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| Path | Severity | Message |
| Observation.code.coding[0].system (l5/c4) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[0].code.coding[0].system (l18/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[0].value.ofType(CodeableConcept).coding[0].system (l27/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[1].code.coding[0].system (l38/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[1].value.ofType(CodeableConcept).coding[0].system (l47/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[2].code.coding[0].system (l58/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[2].value.ofType(CodeableConcept).coding[0].system (l67/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[3].code.coding[0].system (l78/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[3].value.ofType(Quantity) (l87/c8) | information | A definition for CodeSystem 'http://some/unit/system' could not be found, so the code cannot be validated |
| Observation.component[4].code.coding[0].system (l95/c8) | information | A definition for CodeSystem 'http://github.com/phenopackets/core-ig/CodeSystem/OTHER' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[4].value.ofType(CodeableConcept).coding[0] (l104/c8) | information | A definition for CodeSystem 'http://github.com/phenopackets/core-ig/CodeSystem/OTHER' could not be found, so the code cannot be validated |
| Observation (l1/c2) | warning | Best Practice Recommendation: In general, all observations should have a subject |
| Observation (l1/c2) | warning | Best Practice Recommendation: In general, all observations should have a performer |
| Observation (l1/c2) | warning | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| Path | Severity | Message |
| Specimen.extension[0].value.ofType(CodeableConcept).coding[0].code (l12/c8) | warning | Unknown Code 'NCIT_C39853' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Specimen.extension[0].value.ofType(CodeableConcept).coding[0].display (l12/c8) | warning | Wrong Display Name 'Infiltrating Urothelial Carcinoma' for http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#NCIT_C39853 - should be (for the language(s) '--') (from http://tx.fhir.org/r4) |
| Specimen.extension[1].value.ofType(CodeableConcept).coding[0].code (l24/c8) | warning | Unknown Code 'NCIT_C84509' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Specimen.extension[1].value.ofType(CodeableConcept).coding[0].display (l24/c8) | warning | Wrong Display Name 'Primary Malignant Neoplasm' for http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#NCIT_C84509 - should be (for the language(s) '--') (from http://tx.fhir.org/r4) |
| Specimen.extension[2].value.ofType(CodeableConcept).coding[0].code (l36/c8) | warning | Unknown Code 'NCIT_C36136' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Specimen.extension[2].value.ofType(CodeableConcept).coding[0].display (l36/c8) | warning | Wrong Display Name 'Grade 2 Lesion' for http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#NCIT_C36136 - should be (for the language(s) '--') (from http://tx.fhir.org/r4) |
| Specimen.extension[3].value.ofType(CodeableConcept).coding[0].code (l48/c8) | warning | Unknown Code 'NCIT_C28054' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Specimen.extension[3].value.ofType(CodeableConcept).coding[0].display (l48/c8) | warning | Wrong Display Name 'Stage II' for http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#NCIT_C28054 - should be (for the language(s) '--') (from http://tx.fhir.org/r4) |
| Specimen.extension[4].value.ofType(CodeableConcept).coding[0].code (l60/c8) | warning | Unknown Code 'NCIT_C48699' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Specimen.extension[4].value.ofType(CodeableConcept).coding[0].display (l60/c8) | warning | Wrong Display Name 'M0 Stage Finding' for http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#NCIT_C48699 - should be (for the language(s) '--') (from http://tx.fhir.org/r4) |
| Specimen.extension[5].value.ofType(CodeableConcept).coding[0].system (l72/c8) | information | A definition for CodeSystem 'http://github.com/EBISPOT/efo' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Specimen.type.coding[0] (l95/c4) | information | A definition for CodeSystem 'http://github.com/EBISPOT/efo' could not be found, so the code cannot be validated |
| Specimen.collection.bodySite.coding[0].system (l84/c6) | information | A definition for CodeSystem 'http://github.com/obophenotype/uberon' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Specimen.processing[0].procedure.coding[0].code (l114/c8) | warning | Unknown Code 'NCIT_C5189' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Specimen.processing[0].procedure.coding[0].display (l114/c8) | warning | Wrong Display Name 'Radical Cystoprostatectomy' for http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#NCIT_C5189 - should be (for the language(s) '--') (from http://tx.fhir.org/r4) |
| Path | Severity | Message |
| StructureDefinition.snapshot.element[59].pattern.ofType(CodeableConcept) (l1/c195703) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.snapshot.element[73].pattern.ofType(CodeableConcept) (l1/c215921) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.snapshot.element[87].pattern.ofType(CodeableConcept) (l1/c236059) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.snapshot.element[101].pattern.ofType(CodeableConcept) (l1/c256289) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.snapshot.element[115].pattern.ofType(CodeableConcept) (l1/c276457) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.snapshot.element[129].pattern.ofType(CodeableConcept) (l1/c296508) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.snapshot.element[143].pattern.ofType(CodeableConcept) (l1/c316654) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.differential.element[6].pattern.ofType(CodeableConcept) (l1/c329228) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.differential.element[10].pattern.ofType(CodeableConcept) (l1/c329904) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.differential.element[14].pattern.ofType(CodeableConcept) (l1/c330555) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.differential.element[18].pattern.ofType(CodeableConcept) (l1/c331343) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.differential.element[22].pattern.ofType(CodeableConcept) (l1/c332009) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.differential.element[26].pattern.ofType(CodeableConcept) (l1/c332662) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.differential.element[30].pattern.ofType(CodeableConcept) (l1/c333404) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| fsh-generated/resources/Bundle-PhenopacketsBundleExample01.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Bundle-PhenopacketsBundleExample01.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Bundle-PhenopacketsBundleExample01.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Bundle-PhenopacketsBundleExample01.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Bundle-PhenopacketsBundleExample01.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Bundle-PhenopacketsBundleExample01.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-CHF-with-severity.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-MVP-with-onset.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-PhenopacketsVariantExample01.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-Polydactyly-with-modifier.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-amyotrophy.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-arachnodactyly.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-globalDevelopmentalDelay.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-hp.0003557.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-hypotonia.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-karyotypic-sex-invalid-1.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-karyotypic-sex-valid-1.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-longPhiltrum.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-lowSetEars.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-lvdysfunction-excluded.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-microphthalmia.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-muscleWeakness.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-phenotypic-abnormality-invalid-1.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-phenotypic-abnormality-valid-1.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-reducedVisualAcuity.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-retinalDetachment.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-tga.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-thrombocytopenia.json | Best Practice Recommendation: In general, all observations should have a performer |
hl7.fhir.uv.phenomics-exchange
