Genomics Reporting Implementation Guide
4.0.0-ballot - STU 4 ballot International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-ballot built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

Resource Profile: GenomicReport - Mappings

Page standards status: Trial-use Maturity Level: 2

Mappings for the genomic-report resource profile.

Mappings to Structures in this Implementation Guide

No Mappings Found

Mappings to other Structures

No Mappings Found

Other Mappings

NameWorkflow PatternFiveWs Pattern MappingHL7 V2 MappingRIM Mappingdoco
.. DiagnosticReport
Event
clinical.diagnostics
ORU -> OBR
  • Entity
  • Role
  • or Act
  • Observation[classCode=OBS
  • moodCode=EVN]
... id
... meta
... implicitRules
... language
... text
Act.text?
... contained
N/A
... Slices for extension
.... extension:recommended-action
.... extension:genomic-risk-assessment
.... extension:coded-note
.... extension:supporting-info
.... extension:hla-genotyping-results-allele-database
.... extension:hla-genotyping-results-glstring
.... extension:workflow-relatedArtifact
... modifierExtension
N/A
... identifier
Event.identifier
FiveWs.identifier
  • OBR-51/ for globally unique filler ID - OBR-3
  • For non-globally unique filler-id the flller/placer number must be combined with the universal service Id - OBR-2(if present)+OBR-3+OBR-4
id
... basedOn
Event.basedOn
ORC? OBR-2/3?
outboundRelationship[typeCode=FLFS].target
... status
Event.status
FiveWs.status
1 mapping)
final and amended are distinguished by whether observation is the subject of a ControlAct event of type "revise"
... Slices for category
FiveWs.class
OBR-24
  • inboundRelationship[typeCode=COMP].source[classCode=LIST
  • moodCode=EVN
  • code < LabService].code
.... category:Genetics
FiveWs.class
OBR-24
  • inboundRelationship[typeCode=COMP].source[classCode=LIST
  • moodCode=EVN
  • code < LabService].code
..... id
n/a
..... extension
n/a
..... coding
  • C*E.1-8
  • C*E.10-22
  • union(.
  • ./translation)
..... text
C*E.9. But note many systems use C*E.2 for this
./originalText[mediaType/code="text/plain"]/data
... code
Event.code
FiveWs.what[x]
OBR-4 (HL7 V2 doesn't provide an easy way to indicate both the ordered test and the performed panel)
code
... subject
Event.subject
FiveWs.subject[x]
PID-3 (no HL7 V2 mapping for Group or Device)
participation[typeCode=SBJ]
... relatesTo
... encounter
Event.encounter
FiveWs.context
PV1-19
  • inboundRelationship[typeCode=COMP].source[classCode=ENC
  • moodCode=EVN]
... effective[x]
Event.occurrence[x]
FiveWs.done[x]
OBR-7
effectiveTime
... issued
FiveWs.recorded
OBR-22
participation[typeCode=VRF or AUT].time
... procedure
... performer
Event.performer.actor
FiveWs.actor
PRT-8 (where this PRT-4-Participation = "PO")
.participation[typeCode=PRF]
... resultsInterpreter
Event.performer.actor
FiveWs.actor
  • OBR-32
  • PRT-8 (where this PRT-4-Participation = "PI")
.participation[typeCode=PRF]
... specimen
SPM
participation[typeCode=SBJ]
... Slices for result
OBXs
outboundRelationship[typeCode=COMP].target
.... result:diagnostic-implication
OBXs
outboundRelationship[typeCode=COMP].target
.... result:therapeutic-implication
OBXs
outboundRelationship[typeCode=COMP].target
.... result:molecular-consequence
OBXs
outboundRelationship[typeCode=COMP].target
.... result:variant
OBXs
outboundRelationship[typeCode=COMP].target
.... result:sequence-phase-relation
OBXs
outboundRelationship[typeCode=COMP].target
.... result:genotype
OBXs
outboundRelationship[typeCode=COMP].target
.... result:haplotype
OBXs
outboundRelationship[typeCode=COMP].target
.... result:biomarker
OBXs
outboundRelationship[typeCode=COMP].target
... note
unknown
... study
... supportingInfo
.... id
n/a
.... extension
n/a
.... modifierExtension
N/A
.... type
.... reference
... media
OBX?
outboundRelationship[typeCode=COMP].target
.... id
n/a
.... extension
n/a
.... modifierExtension
N/A
.... comment
  • .inboundRelationship[typeCode=COMP].source[classCode=OBS
  • moodCode=EVN
  • code="annotation"].value
.... link
.value.reference
... composition
.value.reference
... conclusion
OBX
  • inboundRelationship[typeCode="SPRT"].source[classCode=OBS
  • moodCode=EVN
  • 48767-8].value (type=ST)
... conclusionCode
OBX
  • inboundRelationship[typeCode=SPRT].source[classCode=OBS
  • moodCode=EVN
  • 54531-9].value (type=CD)
... recomendation
... presentedForm
OBX
text (type=ED)
... communication

doco Documentation for this format