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10.8.12.17.4 StructureDefinition: MolecularDefinitionVariation - Mappings

Clinical Genomics icon Work Group  Maturity Level: 0 Trial Use Use Context: Any

Mappings:

FiveWs Pattern Mapping

RIM Mapping

Mappings for the variation Profile (see Mappings to Other Standards for further information & status).

10.8.12.18 FiveWs Pattern Mapping (http://hl7.org/fhir/fivews)

MolecularDefinitionVariation
MolecularDefinition clinical.diagnostics
   id
   meta
   implicitRules
   language
   text
   contained
   extension
   modifierExtension
   identifier FiveWs.identifier
   type
   location
      id
      extension
      modifierExtension
      sequenceLocation
         id
         extension
         modifierExtension
         sequenceContext
         coordinateInterval
            id
            extension
            modifierExtension
            numberingSystem
            start[x]
            end[x]
         strand
      cytobandLocation
         id
         extension
         modifierExtension
         genomeAssembly
            id
            extension
            modifierExtension
            organism
            build
            accession
            description[x]
         cytobandInterval
            id
            extension
            modifierExtension
            chromosome
            startCytoband
               id
               extension
               modifierExtension
               arm[x]
               region[x]
               band[x]
               subBand[x]
            endCytoband
               id
               extension
               modifierExtension
               arm[x]
               region[x]
               band[x]
               subBand[x]
      featureLocation
         id
         extension
         modifierExtension
         geneId
   representation
      id
      extension
      modifierExtension
      focus
      code
      literal
         id
         extension
         modifierExtension
         encoding
         value
      resolvable
      extracted
         id
         extension
         modifierExtension
         startingMolecule
         start
         end
         coordinateSystem
         reverseComplement
      repeated
         id
         extension
         modifierExtension
         sequenceMotif
         copyCount
      concatenated
         id
         extension
         modifierExtension
         sequenceElement
            id
            extension
            modifierExtension
            sequence
            ordinalIndex
      relative
         id
         extension
         modifierExtension
         startingMolecule
         edit
            id
            extension
            modifierExtension
            editOrder
            coordinateSystem
            start
            end
            replacementMolecule
            replacedMolecule
   representation ContextState
      id
      extension
      modifierExtension
      focus
      code
      literal
         id
         extension
         modifierExtension
         encoding
         value
      resolvable
      extracted
         id
         extension
         modifierExtension
         startingMolecule
         start
         end
         coordinateSystem
         reverseComplement
      repeated
         id
         extension
         modifierExtension
         sequenceMotif
         copyCount
      concatenated
         id
         extension
         modifierExtension
         sequenceElement
            id
            extension
            modifierExtension
            sequence
            ordinalIndex
      relative
         id
         extension
         modifierExtension
         startingMolecule
         edit
            id
            extension
            modifierExtension
            editOrder
            coordinateSystem
            start
            end
            replacementMolecule
            replacedMolecule
   representation ReferenceState
      id
      extension
      modifierExtension
      focus
      code
      literal
         id
         extension
         modifierExtension
         encoding
         value
      resolvable
      extracted
         id
         extension
         modifierExtension
         startingMolecule
         start
         end
         coordinateSystem
         reverseComplement
      repeated
         id
         extension
         modifierExtension
         sequenceMotif
         copyCount
      concatenated
         id
         extension
         modifierExtension
         sequenceElement
            id
            extension
            modifierExtension
            sequence
            ordinalIndex
      relative
         id
         extension
         modifierExtension
         startingMolecule
         edit
            id
            extension
            modifierExtension
            editOrder
            coordinateSystem
            start
            end
            replacementMolecule
            replacedMolecule
   representation AlternativeState
      id
      extension
      modifierExtension
      focus
      code
      literal
         id
         extension
         modifierExtension
         encoding
         value
      resolvable
      extracted
         id
         extension
         modifierExtension
         startingMolecule
         start
         end
         coordinateSystem
         reverseComplement
      repeated
         id
         extension
         modifierExtension
         sequenceMotif
         copyCount
      concatenated
         id
         extension
         modifierExtension
         sequenceElement
            id
            extension
            modifierExtension
            sequence
            ordinalIndex
      relative
         id
         extension
         modifierExtension
         startingMolecule
         edit
            id
            extension
            modifierExtension
            editOrder
            coordinateSystem
            start
            end
            replacementMolecule
            replacedMolecule

10.8.12.19 RIM Mapping (http://hl7.org/v3)

MolecularDefinitionVariation
MolecularDefinition Entity, Role, or Act
   id
   meta
   implicitRules
   language
   text Act.text?
   contained N/A
   extension N/A
   modifierExtension N/A
   identifier
   type
   location
      id n/a
      extension n/a
      modifierExtension N/A
      sequenceLocation
         id n/a
         extension n/a
         modifierExtension N/A
         sequenceContext
         coordinateInterval
            id n/a
            extension n/a
            modifierExtension N/A
            numberingSystem
            start[x]
            end[x]
         strand
      cytobandLocation
         id n/a
         extension n/a
         modifierExtension N/A
         genomeAssembly
            id n/a
            extension n/a
            modifierExtension N/A
            organism
            build
            accession
            description[x]
         cytobandInterval
            id n/a
            extension n/a
            modifierExtension N/A
            chromosome
            startCytoband
               id n/a
               extension n/a
               modifierExtension N/A
               arm[x]
               region[x]
               band[x]
               subBand[x]
            endCytoband
               id n/a
               extension n/a
               modifierExtension N/A
               arm[x]
               region[x]
               band[x]
               subBand[x]
      featureLocation
         id n/a
         extension n/a
         modifierExtension N/A
         geneId
   representation
      id n/a
      extension n/a
      modifierExtension N/A
      focus
      code
      literal
         id n/a
         extension n/a
         modifierExtension N/A
         encoding
         value
      resolvable
      extracted
         id n/a
         extension n/a
         modifierExtension N/A
         startingMolecule
         start
         end
         coordinateSystem
         reverseComplement
      repeated
         id n/a
         extension n/a
         modifierExtension N/A
         sequenceMotif
         copyCount
      concatenated
         id n/a
         extension n/a
         modifierExtension N/A
         sequenceElement
            id n/a
            extension n/a
            modifierExtension N/A
            sequence
            ordinalIndex
      relative
         id n/a
         extension n/a
         modifierExtension N/A
         startingMolecule
         edit
            id n/a
            extension n/a
            modifierExtension N/A
            editOrder
            coordinateSystem
            start
            end
            replacementMolecule
            replacedMolecule
   representation ContextState
      id n/a
      extension n/a
      modifierExtension N/A
      focus
      code
      literal
         id n/a
         extension n/a
         modifierExtension N/A
         encoding
         value
      resolvable
      extracted
         id n/a
         extension n/a
         modifierExtension N/A
         startingMolecule
         start
         end
         coordinateSystem
         reverseComplement
      repeated
         id n/a
         extension n/a
         modifierExtension N/A
         sequenceMotif
         copyCount
      concatenated
         id n/a
         extension n/a
         modifierExtension N/A
         sequenceElement
            id n/a
            extension n/a
            modifierExtension N/A
            sequence
            ordinalIndex
      relative
         id n/a
         extension n/a
         modifierExtension N/A
         startingMolecule
         edit
            id n/a
            extension n/a
            modifierExtension N/A
            editOrder
            coordinateSystem
            start
            end
            replacementMolecule
            replacedMolecule
   representation ReferenceState
      id n/a
      extension n/a
      modifierExtension N/A
      focus
      code
      literal
         id n/a
         extension n/a
         modifierExtension N/A
         encoding
         value
      resolvable
      extracted
         id n/a
         extension n/a
         modifierExtension N/A
         startingMolecule
         start
         end
         coordinateSystem
         reverseComplement
      repeated
         id n/a
         extension n/a
         modifierExtension N/A
         sequenceMotif
         copyCount
      concatenated
         id n/a
         extension n/a
         modifierExtension N/A
         sequenceElement
            id n/a
            extension n/a
            modifierExtension N/A
            sequence
            ordinalIndex
      relative
         id n/a
         extension n/a
         modifierExtension N/A
         startingMolecule
         edit
            id n/a
            extension n/a
            modifierExtension N/A
            editOrder
            coordinateSystem
            start
            end
            replacementMolecule
            replacedMolecule
   representation AlternativeState
      id n/a
      extension n/a
      modifierExtension N/A
      focus
      code
      literal
         id n/a
         extension n/a
         modifierExtension N/A
         encoding
         value
      resolvable
      extracted
         id n/a
         extension n/a
         modifierExtension N/A
         startingMolecule
         start
         end
         coordinateSystem
         reverseComplement
      repeated
         id n/a
         extension n/a
         modifierExtension N/A
         sequenceMotif
         copyCount
      concatenated
         id n/a
         extension n/a
         modifierExtension N/A
         sequenceElement
            id n/a
            extension n/a
            modifierExtension N/A
            sequence
            ordinalIndex
      relative
         id n/a
         extension n/a
         modifierExtension N/A
         startingMolecule
         edit
            id n/a
            extension n/a
            modifierExtension N/A
            editOrder
            coordinateSystem
            start
            end
            replacementMolecule
            replacedMolecule