North West Genomic Medicine Service Alliance
0.0.7 - ci-build United Kingdom flag

North West Genomic Medicine Service Alliance, published by NHS North West GMSA. This guide is not an authorized publication; it is the continuous build for version 0.0.7 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/nw-gmsa/R4/ and changes regularly. See the Directory of published versions

Table of Contents

.. 0 Table of Contents
... 1 Home
... 2 Laboratory Testing Workflow (LTW)
... 3 Patient Administration (PAM)
... 4 Healthcare Provider Directory (HPD)
... 5 Health Information Exchange (HIE)
... 6 Placer Order Management [LAB-1]
... 7 Filler Order Management [LAB-2]
... 8 Order Results Management [LAB-3]
... 9 Work Order Management [LAB-4]
... 10 Test Results Management [LAB-5]
... 11 Query Existing Data [QEDm]
... 12 Mobile Access to Health Documents [MHD]
... 13 Overview
... 14 HL7 v2 Artefacts
... 15 Architecture
... 16 Testing
... 17 Support
... 18 Authorisation (OAuth2)
... 19 Deployment
... 20 OAuth2
... 21 Workflow Options
... 22 Identifiers and Codes
... 23 Domain Archetypes Introduction
... 24 Artifacts Summary
.... 24.1 Automation Manager
.... 24.2 Clinical Document
.... 24.3 Intermediary
.... 24.4 Order Filler
.... 24.5 Order Placer
.... 24.6 Order Result Tracker
.... 24.7 Patient Identity Source
.... 24.8 Provider Information Source
.... 24.9 CapabilityStatement for NW GMSA Clinical Data Repository
.... 24.10 CapabilityStatement for NW GMSA Regional Integration Engine for Genomics
.... 24.11 Process Message
.... 24.12 Message Definition - Laboratory Order
.... 24.13 Message Definition - Patient Encounter
.... 24.14 Message Definition - Patient Identity
.... 24.15 Message Definition - Unsolicited Observation
.... 24.16 assigner
.... 24.17 CBC panel - Blood by Automated count
.... 24.18 Comprehensive metabolic 2000 panel - Serum or Plasma
.... 24.19 Master HL7 genetic variant reporting panel
.... 24.20 North West Genomics Test Order
.... 24.21 North West Genomics Test Order Future
.... 24.22 North West Genomics Test Report
.... 24.23 Binary
.... 24.24 Composition
.... 24.25 Composition Genomic Report
.... 24.26 Condition
.... 24.27 Diagnostic Report
.... 24.28 DocumentReference
.... 24.29 Encounter
.... 24.30 MessageHeader
.... 24.31 Observation
.... 24.32 Observation Diagnostic Implication
.... 24.33 Observation Panel
.... 24.34 Observation Therapeutic Implication
.... 24.35 Observation Variant
.... 24.36 OperationOutcome
.... 24.37 Organization
.... 24.38 Patient
.... 24.39 Practitioner
.... 24.40 PractitionerRole
.... 24.41 Questionnaire
.... 24.42 QuestionnaireResponse
.... 24.43 ServiceRequest
.... 24.44 Specimen
.... 24.45 Task
.... 24.46 Accession Number
.... 24.47 Attachment
.... 24.48 CodeableReference
.... 24.49 Correlation Identifier
.... 24.50 Filler Order Number
.... 24.51 Genomics Pedigree Number
.... 24.52 Hospital Provider Spell Identifier
.... 24.53 Medical Record Number
.... 24.54 NHS Number
.... 24.55 Organisation Code
.... 24.56 Organisation Site Identifier
.... 24.57 Placer Group Number
.... 24.58 Placer Order Number
.... 24.59 Practitioner Identifier
.... 24.60 Report Number
.... 24.61 Shipment Tracking Number
.... 24.62 ExtCodeableReference
.... 24.63 Admission Method
.... 24.64 Admission Source
.... 24.65 Discharge Destination
.... 24.66 Discharge Disposition
.... 24.67 DocumentEntry Class
.... 24.68 DocumentEntry mimeType
.... 24.69 DocumentEntry Type
.... 24.70 Ethnicity
.... 24.71 Facility Type
.... 24.72 Genomic Cancer Test Directory
.... 24.73 Genomic Condition Codes
.... 24.74 Genomic Rare and Inherited Disease Test Directory
.... 24.75 Genomic Test Outcome Codes
.... 24.76 NW IdentifierType
.... 24.77 Order Category
.... 24.78 Patient Encounter Trigger
.... 24.79 Patient Identity Trigger
.... 24.80 Practitioner Identifiers
.... 24.81 Request Priority
.... 24.82 Service
.... 24.83 Specialty
.... 24.84 Specimen Type
.... 24.85 Yes/No
.... 24.86 Yes/No/Unknown
.... 24.87 Genomic Condition Code
.... 24.88 Genomic Test Directory
.... 24.89 Genomic Test Outcome Code
.... 24.90 MFT EPIC Question Ids
.... 24.91 NW GMSA Codes
.... 24.92 UK Professional License
.... 24.93 GMC Number
.... 24.94 GMP Number
.... 24.95 NHS Number
.... 24.96 ODS Code
.... 24.97 ODS Site Code
.... 24.98 LOINC to SNOMED UK edition
.... 24.99 SNOMED LOINC edition to SNOMED UK edition
.... 24.100 Bundle 'Event Message' - Patient Update
.... 24.101 Bundle 'Message' - Genomics Order Reply
.... 24.102 Bundle 'Message' - Genomics Order Reply Acknowledgement
.... 24.103 Bundle 'Transaction' - Genomics Order Asynchronous Message Reply Acknowledgement
.... 24.104 Consanguinity (type=CE)
.... 24.105 Genomic Order Entry Optional Questions
.... 24.106 Genomic Report BRCA1 Variant Example
.... 24.107 Genomic Report Ovarian Carcinoma Diagnostic Implication Example
.... 24.108 MCV - Mean corpuscular volume
.... 24.109 Message Header - Genomic Order Reply fatal
.... 24.110 Message Header - Genomic Order Reply fatal Acknowledgement
.... 24.111 Message Header - Genomic Order Reply Transient
.... 24.112 Message Header - Genomic Report
.... 24.113 Message Header - Patient
.... 24.114 Order Tracking Number (type=ST)
.... 24.115 Organization MANCHESTER UNIVERSITY NHS FOUNDATION TRUST
.... 24.116 Organization North West GMSA
.... 24.117 Output from a FHIR Validation
.... 24.118 Parameters Expansion Profile
.... 24.119 Pregnancy Expected Delivery Date (type=DT)
.... 24.120 Task Genomic Test Completed
.... 24.121 Task Genomic Test Requested
.... 24.122 Binary Genomic Record of Discussion Example
.... 24.123 Bundle 'Message' - Genomics Order Reply
.... 24.124 Bundle 'Message' - Genomics Order with Attachment
.... 24.125 Bundle 'Message' - Genomics Order with Coded Entries
.... 24.126 Bundle 'SearchSet' - Genomics Order
.... 24.127 Document Reference Laboratory Order
.... 24.128 Encounter 'episode/stay' Example
.... 24.129 Message Header - Genomic Order
.... 24.130 Message Header - Genomic Order Reply ok
.... 24.131 Patient - OctaviaCHISLETT NHS Number: 9449305552
.... 24.132 PractitionerRole C3456789 Example
.... 24.133 ServiceRequest Attachment Example
.... 24.134 ServiceRequest Coded Entries Example
.... 24.135 Specimen Example
.... 24.136 Binary Genomic Report Example
.... 24.137 Bundle 'Message' - Genomics Report
.... 24.138 Diagnostic Report Example.
.... 24.139 Document Reference Laboratory Report
.... 24.140 Message Header - Genomic Report
.... 24.141 Bundle `Document` - Genetic Report
.... 24.142 Composition - Genomics Report Octavia CHISLETT
.... 24.143 EPIC-OBR-1 Example
.... 24.144 EPIC-OBX-10 Example
.... 24.145 EPIC-OBX-11 Example
.... 24.146 EPIC-OBX-2 Example
.... 24.147 EPIC-OBX-4 Example
.... 24.148 EPIC-OBX-6 Example
.... 24.149 EPIC-OBX-7 Example
.... 24.150 EPIC-OBX-8 Example
.... 24.151 Genomic Referral Category
.... 24.152 High infection risk sample
.... 24.153 Informed Consent
.... 24.154 OBX Pregnancy
.... 24.155 Supervising Clinician
.... 24.156 Bundle-Bundle-NonWGSTestOrderForm-Reanalysis-Example
.... 24.157 Bundle-NonWGSTestOrderForm-CancerSolidTumor-Example
.... 24.158 Bundle-NonWGSTestOrderForm-FetalScenario-Example
.... 24.159 837d78a0-30cd-478c-83a8-f83d16fc4443