Generated Narrative: ConceptMap dm-transplant-to-omop

This mapping does not specify any particular context of use.


Mapping from PROTECT-CHILD Data Model Variables to OHDSI Standardized Vocabularies

Source Concept DetailsRelationshipTarget Concept DetailsComment
Codes from PROTECT-CHILD Data Model VariablesCodes from OHDSI Standardized Vocabularies
transplant.d_r_weight_ratiotransplant.d_r_weight_ratiois equivalent to2000000009Graft-to-recipient weight ratioOMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD.
transplant.vessel_mismatch_d_rtransplant.vessel_mismatch_d_ris equivalent to2000000010Donor–recipient vessel mismatchOMOP OBSERVATION.observation_concept_id; vocabulary PROTECT-CHILD.
transplant.cold_ischemia_timetransplant.cold_ischemia_timeis equivalent to3045879Cold ischemic time {Organ}OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to8550minuteOMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.
transplant.warm_ischemia_timetransplant.warm_ischemia_timeis equivalent to3043350Warm ischemic time {Organ}OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to8550minuteOMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.
transplant.tx_typetransplant.tx_typenarrower4076862Transplantation of liverOMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.
narrower4322471Transplant of kidneyOMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.
transplant.vascular_anomaliestransplant.vascular_anomaliesis equivalent to37204873Vascular malformationOMOP OBSERVATION.observation_concept_id; vocabulary SNOMED.
transplant.type_surgical_biliary_anastomosistransplant.type_surgical_biliary_anastomosisnarrower2000000017Duct-to-Duct AnastomosisOMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary PROTECT-CHILD.
narrower37151270CholedochocholedochostomyOMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.
narrower4337833Anastomosis of hepatic duct to gastrointestinal tractOMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.
narrower2000000018HepaticocholedochostomyOMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary PROTECT-CHILD.
narrower2000000019Bilioenteric AnastomosisOMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary PROTECT-CHILD.
narrower4200500Roux-en-Y hepaticojejunostomyOMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.
transplant.intraoperative_complicationstransplant.intraoperative_complicationsnarrower4308716Intraoperative hemorrhageOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower4132549Injury of bile ductOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower4308537Injury to blood vessel during surgeryOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower2000000031Liver ischemiaOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD.
narrower4087151Injury of ureterOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower442553Injury of urinary bladderOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower42536547Ischemia of kidneyOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
transplant.intraoperative_complications_othertransplant.intraoperative_complications_otheris equivalent to42538061Intraoperative complicationOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
transplant.type_ureteral_graft_anastomosistransplant.type_ureteral_graft_anastomosisnarrower4023268Anastomosis of ureter to urinary bladderOMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.
narrower2109661Ureteroneocystostomy; anastomosis of single ureter to bladderOMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary CPT4.
narrower4198228Formation of cutaneous ureterostomyOMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.
narrower4264011UreterostomyOMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.
narrower4044045Suprapubic cystostomyOMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.
transplant.other_type_ureteral_graft_anastomosistransplant.other_type_ureteral_graft_anastomosisis equivalent to4267594Anastomosis of ureterOMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.
 <status value="draft"/> <experimental value="false"/> <date value="2026-09-28T06:51:47+00:00"/> <publisher value="Protect Child"/> <contact> <name value="Protect Child"/> <telecom> <system value="url"/> <value value="https://protect-child.eu/"/> </telecom> </contact> <description value="The OMOP concepts for each column of the DMv1.2 transplant table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary)."/> <group> <source value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs"/> <target value="https://fhir-terminology.ohdsi.org"/> <element> <code value="transplant.d_r_weight_ratio"/> <target> <code value="2000000009"/> <display value="Graft-to-recipient weight ratio"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD."/> </target> </element> <element> <code value="transplant.vessel_mismatch_d_r"/> <target> <code value="2000000010"/> <display value="Donor–recipient vessel mismatch"/> <equivalence value="equivalent"/> <comment value="OMOP OBSERVATION.observation_concept_id; vocabulary PROTECT-CHILD."/> </target> </element> <element> <code value="transplant.cold_ischemia_time"/> <target> <code value="3045879"/> <display value="Cold ischemic time {Organ}"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="8550"/> <display value="minute"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."/> </target> </element> <element> <code value="transplant.warm_ischemia_time"/> <target> <code value="3043350"/> <display value="Warm ischemic time {Organ}"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="8550"/> <display value="minute"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."/> </target> </element> <element> <code value="transplant.tx_type"/> <target> <code value="4076862"/> <display value="Transplantation of liver"/> <equivalence value="narrower"/> <comment value="OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."/> </target> <target> <code value="4322471"/> <display value="Transplant of kidney"/> <equivalence value="narrower"/> <comment value="OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."/> </target> </element> <element> <code value="transplant.vascular_anomalies"/> <target> <code value="37204873"/> <display value="Vascular malformation"/> <equivalence value="equivalent"/> <comment value="OMOP OBSERVATION.observation_concept_id; vocabulary SNOMED."/> </target> </element> <element> <code value="transplant.type_surgical_biliary_anastomosis"/> <target> <code value="2000000017"/> <display value="Duct-to-Duct Anastomosis"/> <equivalence value="narrower"/> <comment value="OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary PROTECT-CHILD."/> </target> <target> <code value="37151270"/> <display value="Choledochocholedochostomy"/> <equivalence value="narrower"/> <comment value="OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."/> </target> <target> <code value="4337833"/> <display value="Anastomosis of hepatic duct to gastrointestinal tract"/> <equivalence value="narrower"/> <comment value="OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."/> </target> <target> <code value="2000000018"/> <display value="Hepaticocholedochostomy"/> <equivalence value="narrower"/> <comment value="OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary PROTECT-CHILD."/> </target> <target> <code value="2000000019"/> <display value="Bilioenteric Anastomosis"/> <equivalence value="narrower"/> <comment value="OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary PROTECT-CHILD."/> </target> <target> <code value="4200500"/> <display value="Roux-en-Y hepaticojejunostomy"/> <equivalence value="narrower"/> <comment value="OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."/> </target> </element> <element> <code value="transplant.intraoperative_complications"/> <target> <code value="4308716"/> <display value="Intraoperative hemorrhage"/> <equivalence value="narrower"/> <comment value="OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."/> </target> <target> <code value="4132549"/> <display value="Injury of bile duct"/> <equivalence value="narrower"/> <comment value="OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."/> </target> <target> <code value="4308537"/> <display value="Injury to blood vessel during surgery"/> <equivalence value="narrower"/> <comment value="OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."/> </target> <target> <code value="2000000031"/> <display value="Liver ischemia"/> <equivalence value="narrower"/> <comment value="OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD."/> </target> <target> <code value="4087151"/> <display value="Injury of ureter"/> <equivalence value="narrower"/> <comment value="OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."/> </target> <target> <code value="442553"/> <display value="Injury of urinary bladder"/> <equivalence value="narrower"/> <comment value="OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."/> </target> <target> <code value="42536547"/> <display value="Ischemia of kidney"/> <equivalence value="narrower"/> <comment value="OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."/> </target> </element> <element> <code value="transplant.intraoperative_complications_other"/> <target> <code value="42538061"/> <display value="Intraoperative complication"/> <equivalence value="equivalent"/> <comment value="OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."/> </target> </element> <element> <code value="transplant.type_ureteral_graft_anastomosis"/> <target> <code value="4023268"/> <display value="Anastomosis of ureter to urinary bladder"/> <equivalence value="narrower"/> <comment value="OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."/> </target> <target> <code value="2109661"/> <display value="Ureteroneocystostomy; anastomosis of single ureter to bladder"/> <equivalence value="narrower"/> <comment value="OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary CPT4."/> </target> <target> <code value="4198228"/> <display value="Formation of cutaneous ureterostomy"/> <equivalence value="narrower"/> <comment value="OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."/> </target> <target> <code value="4264011"/> <display value="Ureterostomy"/> <equivalence value="narrower"/> <comment value="OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."/> </target> <target> <code value="4044045"/> <display value="Suprapubic cystostomy"/> <equivalence value="narrower"/> <comment value="OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."/> </target> </element> <element> <code value="transplant.other_type_ureteral_graft_anastomosis"/> <target> <code value="4267594"/> <display value="Anastomosis of ureter"/> <equivalence value="equivalent"/> <comment value="OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."/> </target> </element> </group> </ConceptMap>