Generated Narrative: ConceptMap dm-patient-to-omop

This mapping does not specify any particular context of use.


Mapping from PROTECT-CHILD Data Model Variables to OHDSI Standardized Vocabularies

Source Concept DetailsRelationshipTarget Concept DetailsComment
Codes from PROTECT-CHILD Data Model VariablesCodes from OHDSI Standardized Vocabularies
patient.genderpatient.gendernarrower8532FEMALEOMOP PERSON.gender_concept_id; vocabulary Gender.
narrower8507MALEOMOP PERSON.gender_concept_id; vocabulary Gender.
patient.max_prapatient.max_prais equivalent to21493706Calculated panel reactive antibody - SerumOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to8554percentOMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.
patient.last_prapatient.last_prais equivalent to21493706Calculated panel reactive antibody - SerumOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to8554percentOMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.
patient.date_histological_diagpatient.date_histological_diagis equivalent to2000000042Primary diagnosis confirmed by histologyOMOP OBSERVATION.observation_concept_id; vocabulary PROTECT-CHILD.
patient.diag_primary_diseasepatient.diag_primary_diseaseis related to32902Primary diagnosisOMOP CONDITION_OCCURRENCE.condition_status_concept_id; vocabulary Condition Status.
 <status value="draft"/> <experimental value="false"/> <date value="2026-09-28T06:51:47+00:00"/> <publisher value="Protect Child"/> <contact> <name value="Protect Child"/> <telecom> <system value="url"/> <value value="https://protect-child.eu/"/> </telecom> </contact> <description value="The OMOP concepts for each column of the DMv1.2 patient table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary)."/> <group> <source value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs"/> <target value="https://fhir-terminology.ohdsi.org"/> <element> <code value="patient.gender"/> <target> <code value="8532"/> <display value="FEMALE"/> <equivalence value="narrower"/> <comment value="OMOP PERSON.gender_concept_id; vocabulary Gender."/> </target> <target> <code value="8507"/> <display value="MALE"/> <equivalence value="narrower"/> <comment value="OMOP PERSON.gender_concept_id; vocabulary Gender."/> </target> </element> <element> <code value="patient.max_pra"/> <target> <code value="21493706"/> <display value="Calculated panel reactive antibody - Serum"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="8554"/> <display value="percent"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."/> </target> </element> <element> <code value="patient.last_pra"/> <target> <code value="21493706"/> <display value="Calculated panel reactive antibody - Serum"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="8554"/> <display value="percent"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."/> </target> </element> <element> <code value="patient.date_histological_diag"/> <target> <code value="2000000042"/> <display value="Primary diagnosis confirmed by histology"/> <equivalence value="equivalent"/> <comment value="OMOP OBSERVATION.observation_concept_id; vocabulary PROTECT-CHILD."/> </target> </element> <element> <code value="patient.diag_primary_disease"/> <target> <code value="32902"/> <display value="Primary diagnosis"/> <equivalence value="relatedto"/> <comment value="OMOP CONDITION_OCCURRENCE.condition_status_concept_id; vocabulary Condition Status."/> </target> </element> </group> </ConceptMap>