OneAquaHealth Project, published by OneAquaHealth Project. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/oah/ and changes regularly. See the Directory of published versions

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: Temporary OAH Code System - XML Representation

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<CodeSystem xmlns="http://hl7.org/fhir">
  <id value="temporarySystem-oah-eu"/>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: CodeSystem temporarySystem-oah-eu</b></p><a name="temporarySystem-oah-eu"> </a><a name="hctemporarySystem-oah-eu"> </a><p>This case-sensitive code system <code>http://hl7.eu/fhir/ig/oah/CodeSystem/temporarySystem-oah-eu</code> defines the following codes:</p><table class="codes"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style="white-space:nowrap">macroinvertebreates<a name="temporarySystem-oah-eu-macroinvertebreates"> </a></td><td>Benthic Macro invertebrates count</td><td>Benthic Macroinvertebrates count</td></tr><tr><td style="white-space:nowrap">diatomes<a name="temporarySystem-oah-eu-diatomes"> </a></td><td>Diatoms (microalgae/phytobenthos)</td><td>Diatoms (microalgae/phytobenthos)</td></tr><tr><td style="white-space:nowrap">fishes<a name="temporarySystem-oah-eu-fishes"> </a></td><td>Fish</td><td>Fish</td></tr><tr><td style="white-space:nowrap">macrophytes<a name="temporarySystem-oah-eu-macrophytes"> </a></td><td>Macrophytes (aquatic plants)</td><td>Macrophytes (aquatic plants)</td></tr><tr><td style="white-space:nowrap">liveworts<a name="temporarySystem-oah-eu-liveworts"> </a></td><td>Liveworts/mosses/lichens</td><td>Liveworts/mosses/lichens</td></tr><tr><td style="white-space:nowrap">broad-leaved-herbs<a name="temporarySystem-oah-eu-broad-leaved-herbs"> </a></td><td>Emergent broad-leaved herbs</td><td>Emergent broad-leaved herbs</td></tr><tr><td style="white-space:nowrap">floating-leaved<a name="temporarySystem-oah-eu-floating-leaved"> </a></td><td>Floating-leaved (rooted)</td><td>Floating-leaved (rooted)</td></tr><tr><td style="white-space:nowrap">free-floating<a name="temporarySystem-oah-eu-free-floating"> </a></td><td>Free-floating</td><td>Free-floating</td></tr><tr><td style="white-space:nowrap">amphibious<a name="temporarySystem-oah-eu-amphibious"> </a></td><td>Amphibious (occupy the transition between land and water)</td><td>Amphibious (occupy the transition between land and water)</td></tr><tr><td style="white-space:nowrap">submerged-broad-leaved<a name="temporarySystem-oah-eu-submerged-broad-leaved"> </a></td><td>Submerged broad-leaved</td><td>Submerged broad-leaved</td></tr><tr><td style="white-space:nowrap">submerged-linear-leaved<a name="temporarySystem-oah-eu-submerged-linear-leaved"> </a></td><td>Submerged linear-leaved</td><td>Submerged linear-leaved</td></tr><tr><td style="white-space:nowrap">filamentous-algae<a name="temporarySystem-oah-eu-filamentous-algae"> </a></td><td>Filamentous algae</td><td>Filamentous algae</td></tr><tr><td style="white-space:nowrap">liveworts-non-native<a name="temporarySystem-oah-eu-liveworts-non-native"> </a></td><td>Liveworts/mosses/lichens Non native</td><td>Liveworts/mosses/lichens non native</td></tr><tr><td style="white-space:nowrap">broad-leaved-herbs-non-native<a name="temporarySystem-oah-eu-broad-leaved-herbs-non-native"> </a></td><td>Emergent broad-leaved herbs non native</td><td>Emergent broad-leaved herbs non native</td></tr><tr><td style="white-space:nowrap">floating-leaved-non-native<a name="temporarySystem-oah-eu-floating-leaved-non-native"> </a></td><td>Floating-leaved (rooted) Non native</td><td>Floating-leaved (rooted) non native</td></tr><tr><td style="white-space:nowrap">free-floating-non-native<a name="temporarySystem-oah-eu-free-floating-non-native"> </a></td><td>Free-floating Non native</td><td>Free-floating non native</td></tr><tr><td style="white-space:nowrap">amphibious-non-native<a name="temporarySystem-oah-eu-amphibious-non-native"> </a></td><td>Amphibious (occupy the transition between land and water) Non native</td><td>Amphibious (occupy the transition between land and water) non native</td></tr><tr><td style="white-space:nowrap">submerged-broad-leaved-non-native<a name="temporarySystem-oah-eu-submerged-broad-leaved-non-native"> </a></td><td>Submerged broad-leaved Non native</td><td>Submerged broad-leaved non native</td></tr><tr><td style="white-space:nowrap">submerged-linear-leaved-non-native<a name="temporarySystem-oah-eu-submerged-linear-leaved-non-native"> </a></td><td>Submerged linear-leaved Non native</td><td>Submerged linear-leaved non native</td></tr><tr><td style="white-space:nowrap">filamentous-algae-non-native<a name="temporarySystem-oah-eu-filamentous-algae-non-native"> </a></td><td>Filamentous algae Non native</td><td>Filamentous algae</td></tr><tr><td style="white-space:nowrap">riparianVegetation<a name="temporarySystem-oah-eu-riparianVegetation"> </a></td><td>Riparian vegetation</td><td>Riparian vegetation</td></tr><tr><td style="white-space:nowrap">trees<a name="temporarySystem-oah-eu-trees"> </a></td><td>Trees (height &gt;3m)</td><td>Trees (height &gt;3m)</td></tr><tr><td style="white-space:nowrap">bushes<a name="temporarySystem-oah-eu-bushes"> </a></td><td>Bushes (height (1.5-3m)</td><td>Bushes (height (1.5-3m)</td></tr><tr><td style="white-space:nowrap">herbaceous<a name="temporarySystem-oah-eu-herbaceous"> </a></td><td>Herbaceous (height &lt; 1.5m)</td><td>Herbaceous (height &lt; 1.5m)</td></tr><tr><td style="white-space:nowrap">microbiomes<a name="temporarySystem-oah-eu-microbiomes"> </a></td><td>Microbiomes/Biofilms</td><td>Microbiomes/Biofilms</td></tr><tr><td style="white-space:nowrap">morophology<a name="temporarySystem-oah-eu-morophology"> </a></td><td>Morphology of the streams</td><td>Morphology of the streams – habitat, shape of the channel and valley, substrate in the channel and margins</td></tr><tr><td style="white-space:nowrap">hydrology<a name="temporarySystem-oah-eu-hydrology"> </a></td><td>Hydrology of the stream</td><td>Hydrology of the stream – flow type, diversity of flow types, longitudinal connectivity, runoff</td></tr><tr><td style="white-space:nowrap">LandUse<a name="temporarySystem-oah-eu-LandUse"> </a></td><td>Land use in the margins</td><td>Land use in the margins</td></tr><tr><td style="white-space:nowrap">nutrients<a name="temporarySystem-oah-eu-nutrients"> </a></td><td>Nutrients</td><td>Nutrients (Nitrates, nitrites, ammonia, phosphates, total P, total N, …)</td></tr><tr><td style="white-space:nowrap">pH<a name="temporarySystem-oah-eu-pH"> </a></td><td>pH</td><td>pH</td></tr><tr><td style="white-space:nowrap">dissolvedO2<a name="temporarySystem-oah-eu-dissolvedO2"> </a></td><td>Dissolved O2</td><td>Dissolved O2</td></tr><tr><td style="white-space:nowrap">waterTemperature<a name="temporarySystem-oah-eu-waterTemperature"> </a></td><td>Water temperature</td><td>Water temperature</td></tr><tr><td style="white-space:nowrap">tds<a name="temporarySystem-oah-eu-tds"> </a></td><td>Total dissolved solids (TDS)</td><td>Total dissolved solids (TDS)</td></tr><tr><td style="white-space:nowrap">tss<a name="temporarySystem-oah-eu-tss"> </a></td><td>Total suspended solids (TSS)</td><td>Total suspended solids (TSS)</td></tr><tr><td style="white-space:nowrap">conductivity<a name="temporarySystem-oah-eu-conductivity"> </a></td><td>Conductivity</td><td>Conductivity</td></tr><tr><td style="white-space:nowrap">pharmaceuticals<a name="temporarySystem-oah-eu-pharmaceuticals"> </a></td><td>Pharmaceuticals</td><td>Pharmaceuticals</td></tr><tr><td style="white-space:nowrap">foam<a name="temporarySystem-oah-eu-foam"> </a></td><td>Foam/colour/smell</td><td>Foam/colour/smell</td></tr><tr><td style="white-space:nowrap">coliforms<a name="temporarySystem-oah-eu-coliforms"> </a></td><td>Coliforms</td><td>Coliforms</td></tr><tr><td style="white-space:nowrap">diptera<a name="temporarySystem-oah-eu-diptera"> </a></td><td>Diptera</td><td>Diptera (specially Culicidae and Psycodidae)</td></tr><tr><td style="white-space:nowrap">ticks<a name="temporarySystem-oah-eu-ticks"> </a></td><td>Ticks</td><td>Ticks</td></tr><tr><td style="white-space:nowrap">invasiveOrganisms<a name="temporarySystem-oah-eu-invasiveOrganisms"> </a></td><td>Invasive invertebrate, plants and fish</td><td>Invasive invertebrate, plants and fish</td></tr><tr><td style="white-space:nowrap">birds<a name="temporarySystem-oah-eu-birds"> </a></td><td>Birds</td><td>Birds</td></tr><tr><td style="white-space:nowrap">diatomTratology<a name="temporarySystem-oah-eu-diatomTratology"> </a></td><td>Diatom teratology</td><td>Diatom teratology (deformities)</td></tr><tr><td style="white-space:nowrap">fish<a name="temporarySystem-oah-eu-fish"> </a></td><td>Fish</td><td>Fish</td></tr><tr><td style="white-space:nowrap">amphibians<a name="temporarySystem-oah-eu-amphibians"> </a></td><td>Amphibians</td><td>Amphibians</td></tr><tr><td style="white-space:nowrap">ndci<a name="temporarySystem-oah-eu-ndci"> </a></td><td>Normalized Difference Chlorophyll Index (NDCI)</td><td/></tr><tr><td style="white-space:nowrap">mci<a name="temporarySystem-oah-eu-mci"> </a></td><td>Maximum Chlorophyll Index (MCI)</td><td/></tr><tr><td style="white-space:nowrap">bwdrvi<a name="temporarySystem-oah-eu-bwdrvi"> </a></td><td>Blue Wide Dynamic Range Vegetation Index (BWDRVI)</td><td/></tr><tr><td style="white-space:nowrap">evi<a name="temporarySystem-oah-eu-evi"> </a></td><td>Enhanced Vegetation Index (EVI)</td><td/></tr><tr><td style="white-space:nowrap">ndvi<a name="temporarySystem-oah-eu-ndvi"> </a></td><td>Normalized Difference Vegetation Index (NDVI)</td><td/></tr><tr><td style="white-space:nowrap">ndwi<a name="temporarySystem-oah-eu-ndwi"> </a></td><td>Normalized Difference Water Index (NDWI)</td><td/></tr><tr><td style="white-space:nowrap">absent<a name="temporarySystem-oah-eu-absent"> </a></td><td>Absent</td><td>Absent</td></tr><tr><td style="white-space:nowrap">present<a name="temporarySystem-oah-eu-present"> </a></td><td>Present</td><td>Present</td></tr><tr><td style="white-space:nowrap">extensive<a name="temporarySystem-oah-eu-extensive"> </a></td><td>Extensive</td><td>Extensive</td></tr><tr><td style="white-space:nowrap">several-non-native-species<a name="temporarySystem-oah-eu-several-non-native-species"> </a></td><td>Several non-native species</td><td>Several non-native species</td></tr><tr><td style="white-space:nowrap">non-native-species<a name="temporarySystem-oah-eu-non-native-species"> </a></td><td>Non-native species</td><td>Non-native species</td></tr><tr><td style="white-space:nowrap">unknown-non-native-species<a name="temporarySystem-oah-eu-unknown-non-native-species"> </a></td><td>Unknown non-native species</td><td>Unknown non-native species</td></tr><tr><td style="white-space:nowrap">0-20-percent<a name="temporarySystem-oah-eu-0-20-percent"> </a></td><td>0-20%</td><td>0-20%</td></tr><tr><td style="white-space:nowrap">21-40-percent<a name="temporarySystem-oah-eu-21-40-percent"> </a></td><td>21-40%</td><td>21-40%</td></tr><tr><td style="white-space:nowrap">41-60-percent<a name="temporarySystem-oah-eu-41-60-percent"> </a></td><td>41-60%</td><td>41-60%</td></tr><tr><td style="white-space:nowrap">61-80-percent<a name="temporarySystem-oah-eu-61-80-percent"> </a></td><td>61-80%</td><td>61-80%</td></tr><tr><td style="white-space:nowrap">81-100-percent<a name="temporarySystem-oah-eu-81-100-percent"> </a></td><td>81-100%</td><td>81-100%</td></tr></table></div>
  </text>
  <url value="http://hl7.eu/fhir/ig/oah/CodeSystem/temporarySystem-oah-eu"/>
  <version value="0.1.0-ci-build"/>
  <name value="TemporaryOahSystem"/>
  <title value="Temporary OAH Code System"/>
  <status value="draft"/>
  <experimental value="true"/>
  <date value="2025-08-11T08:52:23+00:00"/>
  <publisher value="OneAquaHealth Project"/>
  <contact>
    <name value="OneAquaHealth Project"/>
    <telecom>
      <system value="url"/>
      <value value="https://www.oneaquahealth.eu"/>
    </telecom>
  </contact>
  <description
               value="This is a temporary code system defined to collect concepts expected to be used by this project, but for which international coded concepts have not been identified yet."/>
  <jurisdiction>
    <coding>
      <system value="http://unstats.un.org/unsd/methods/m49/m49.htm"/>
      <code value="150"/>
      <display value="Europe"/>
    </coding>
  </jurisdiction>
  <caseSensitive value="true"/>
  <content value="complete"/>
  <count value="62"/>
  <concept>
    <code value="macroinvertebreates"/>
    <display value="Benthic Macro invertebrates count"/>
    <definition value="Benthic Macroinvertebrates count"/>
  </concept>
  <concept>
    <code value="diatomes"/>
    <display value="Diatoms (microalgae/phytobenthos)"/>
    <definition value="Diatoms (microalgae/phytobenthos)"/>
  </concept>
  <concept>
    <code value="fishes"/>
    <display value="Fish"/>
    <definition value="Fish"/>
  </concept>
  <concept>
    <code value="macrophytes"/>
    <display value="Macrophytes (aquatic plants)"/>
    <definition value="Macrophytes (aquatic plants)"/>
  </concept>
  <concept>
    <code value="liveworts"/>
    <display value="Liveworts/mosses/lichens"/>
    <definition value="Liveworts/mosses/lichens"/>
  </concept>
  <concept>
    <code value="broad-leaved-herbs"/>
    <display value="Emergent broad-leaved herbs"/>
    <definition value="Emergent broad-leaved herbs"/>
  </concept>
  <concept>
    <code value="floating-leaved"/>
    <display value="Floating-leaved (rooted)"/>
    <definition value="Floating-leaved (rooted)"/>
  </concept>
  <concept>
    <code value="free-floating"/>
    <display value="Free-floating"/>
    <definition value="Free-floating"/>
  </concept>
  <concept>
    <code value="amphibious"/>
    <display
             value="Amphibious (occupy the transition between land and water)"/>
    <definition
                value="Amphibious (occupy the transition between land and water)"/>
  </concept>
  <concept>
    <code value="submerged-broad-leaved"/>
    <display value="Submerged broad-leaved"/>
    <definition value="Submerged broad-leaved"/>
  </concept>
  <concept>
    <code value="submerged-linear-leaved"/>
    <display value="Submerged linear-leaved"/>
    <definition value="Submerged linear-leaved"/>
  </concept>
  <concept>
    <code value="filamentous-algae"/>
    <display value="Filamentous algae"/>
    <definition value="Filamentous algae"/>
  </concept>
  <concept>
    <code value="liveworts-non-native"/>
    <display value="Liveworts/mosses/lichens Non native"/>
    <definition value="Liveworts/mosses/lichens non native"/>
  </concept>
  <concept>
    <code value="broad-leaved-herbs-non-native"/>
    <display value="Emergent broad-leaved herbs non native"/>
    <definition value="Emergent broad-leaved herbs non native"/>
  </concept>
  <concept>
    <code value="floating-leaved-non-native"/>
    <display value="Floating-leaved (rooted) Non native"/>
    <definition value="Floating-leaved (rooted) non native"/>
  </concept>
  <concept>
    <code value="free-floating-non-native"/>
    <display value="Free-floating Non native"/>
    <definition value="Free-floating non native"/>
  </concept>
  <concept>
    <code value="amphibious-non-native"/>
    <display
             value="Amphibious (occupy the transition between land and water) Non native"/>
    <definition
                value="Amphibious (occupy the transition between land and water) non native"/>
  </concept>
  <concept>
    <code value="submerged-broad-leaved-non-native"/>
    <display value="Submerged broad-leaved Non native"/>
    <definition value="Submerged broad-leaved non native"/>
  </concept>
  <concept>
    <code value="submerged-linear-leaved-non-native"/>
    <display value="Submerged linear-leaved Non native"/>
    <definition value="Submerged linear-leaved non native"/>
  </concept>
  <concept>
    <code value="filamentous-algae-non-native"/>
    <display value="Filamentous algae Non native"/>
    <definition value="Filamentous algae"/>
  </concept>
  <concept>
    <code value="riparianVegetation"/>
    <display value="Riparian vegetation"/>
    <definition value="Riparian vegetation"/>
  </concept>
  <concept>
    <code value="trees"/>
    <display value="Trees (height &gt;3m)"/>
    <definition value="Trees (height &gt;3m)"/>
  </concept>
  <concept>
    <code value="bushes"/>
    <display value="Bushes (height (1.5-3m)"/>
    <definition value="Bushes (height (1.5-3m)"/>
  </concept>
  <concept>
    <code value="herbaceous"/>
    <display value="Herbaceous (height &lt; 1.5m)"/>
    <definition value="Herbaceous (height &lt; 1.5m)"/>
  </concept>
  <concept>
    <code value="microbiomes"/>
    <display value="Microbiomes/Biofilms"/>
    <definition value="Microbiomes/Biofilms"/>
  </concept>
  <concept>
    <code value="morophology"/>
    <display value="Morphology of the streams"/>
    <definition
                value="Morphology of the streams – habitat, shape of the channel and valley, substrate in the channel and margins"/>
  </concept>
  <concept>
    <code value="hydrology"/>
    <display value="Hydrology of the stream"/>
    <definition
                value="Hydrology of the stream – flow type, diversity of flow types, longitudinal connectivity, runoff"/>
  </concept>
  <concept>
    <code value="LandUse"/>
    <display value="Land use in the margins"/>
    <definition value="Land use in the margins"/>
  </concept>
  <concept>
    <code value="nutrients"/>
    <display value="Nutrients"/>
    <definition
                value="Nutrients (Nitrates, nitrites, ammonia, phosphates, total P, total N, …)"/>
  </concept>
  <concept>
    <code value="pH"/>
    <display value="pH"/>
    <definition value="pH"/>
  </concept>
  <concept>
    <code value="dissolvedO2"/>
    <display value="Dissolved O2"/>
    <definition value="Dissolved O2"/>
  </concept>
  <concept>
    <code value="waterTemperature"/>
    <display value="Water temperature"/>
    <definition value="Water temperature"/>
  </concept>
  <concept>
    <code value="tds"/>
    <display value="Total dissolved solids (TDS)"/>
    <definition value="Total dissolved solids (TDS)"/>
  </concept>
  <concept>
    <code value="tss"/>
    <display value="Total suspended solids (TSS)"/>
    <definition value="Total suspended solids (TSS)"/>
  </concept>
  <concept>
    <code value="conductivity"/>
    <display value="Conductivity"/>
    <definition value="Conductivity"/>
  </concept>
  <concept>
    <code value="pharmaceuticals"/>
    <display value="Pharmaceuticals"/>
    <definition value="Pharmaceuticals"/>
  </concept>
  <concept>
    <code value="foam"/>
    <display value="Foam/colour/smell"/>
    <definition value="Foam/colour/smell"/>
  </concept>
  <concept>
    <code value="coliforms"/>
    <display value="Coliforms"/>
    <definition value="Coliforms"/>
  </concept>
  <concept>
    <code value="diptera"/>
    <display value="Diptera"/>
    <definition value="Diptera (specially Culicidae and Psycodidae)"/>
  </concept>
  <concept>
    <code value="ticks"/>
    <display value="Ticks"/>
    <definition value="Ticks"/>
  </concept>
  <concept>
    <code value="invasiveOrganisms"/>
    <display value="Invasive invertebrate, plants and fish"/>
    <definition value="Invasive invertebrate, plants and fish"/>
  </concept>
  <concept>
    <code value="birds"/>
    <display value="Birds"/>
    <definition value="Birds"/>
  </concept>
  <concept>
    <code value="diatomTratology"/>
    <display value="Diatom teratology"/>
    <definition value="Diatom teratology (deformities)"/>
  </concept>
  <concept>
    <code value="fish"/>
    <display value="Fish"/>
    <definition value="Fish"/>
  </concept>
  <concept>
    <code value="amphibians"/>
    <display value="Amphibians"/>
    <definition value="Amphibians"/>
  </concept>
  <concept>
    <code value="ndci"/>
    <display value="Normalized Difference Chlorophyll Index (NDCI)"/>
  </concept>
  <concept>
    <code value="mci"/>
    <display value="Maximum Chlorophyll Index (MCI)"/>
  </concept>
  <concept>
    <code value="bwdrvi"/>
    <display value="Blue Wide Dynamic Range Vegetation Index (BWDRVI)"/>
  </concept>
  <concept>
    <code value="evi"/>
    <display value="Enhanced Vegetation Index (EVI)"/>
  </concept>
  <concept>
    <code value="ndvi"/>
    <display value="Normalized Difference Vegetation Index (NDVI)"/>
  </concept>
  <concept>
    <code value="ndwi"/>
    <display value="Normalized Difference Water Index (NDWI)"/>
  </concept>
  <concept>
    <code value="absent"/>
    <display value="Absent"/>
    <definition value="Absent"/>
  </concept>
  <concept>
    <code value="present"/>
    <display value="Present"/>
    <definition value="Present"/>
  </concept>
  <concept>
    <code value="extensive"/>
    <display value="Extensive"/>
    <definition value="Extensive"/>
  </concept>
  <concept>
    <code value="several-non-native-species"/>
    <display value="Several non-native species"/>
    <definition value="Several non-native species"/>
  </concept>
  <concept>
    <code value="non-native-species"/>
    <display value="Non-native species"/>
    <definition value="Non-native species"/>
  </concept>
  <concept>
    <code value="unknown-non-native-species"/>
    <display value="Unknown non-native species"/>
    <definition value="Unknown non-native species"/>
  </concept>
  <concept>
    <code value="0-20-percent"/>
    <display value="0-20%"/>
    <definition value="0-20%"/>
  </concept>
  <concept>
    <code value="21-40-percent"/>
    <display value="21-40%"/>
    <definition value="21-40%"/>
  </concept>
  <concept>
    <code value="41-60-percent"/>
    <display value="41-60%"/>
    <definition value="41-60%"/>
  </concept>
  <concept>
    <code value="61-80-percent"/>
    <display value="61-80%"/>
    <definition value="61-80%"/>
  </concept>
  <concept>
    <code value="81-100-percent"/>
    <display value="81-100%"/>
    <definition value="81-100%"/>
  </concept>
</CodeSystem>