Lithuanian Laboratory Implementation Guide
0.0.1 - ci-build Lithuania vėliava

Lithuanian Laboratory Implementation Guide, published by Lithuanian Medical Library. This guide is not an authorized publication; it is the continuous build for version 0.0.1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7LT/ig-lt-lab/ and changes regularly. See the Directory of published versions

Resursų profilis: Specimen: Tissue Block

Oficialus URL: https://hl7.lt/fhir/lab/StructureDefinition/specimen-block-lt-lab Versija: 0.0.1
Mašiniškai apdorojamas pavadinimas: SpecimenBlockLtLab

A profile for paraffin-embedded tissue blocks derived from a parent specimen.

Usages:

You can also check for usages in the FHIR IG Statistics

Profilio turinio formaliosios peržiūros

Profilių, skirtumų rinkinių, momentinių kopijų aprašas ir jų reprezentacijos.

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* SpecimenEu(0.2.0-ci) Laboratory Specimen
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... contained 0..* Resource Contained, inline Resources
... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored
Constraints: ext-1
.... use ?!Σ 0..1 code usual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .
Required Pattern: secondary
... status ?!Σ 0..1 code available | unavailable | unsatisfactory | entered-in-error
Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
... type Σ 0..1 CodeableConcept Kind of material that forms the specimen
Binding: http://hl7.eu/fhir/laboratory/ValueSet/lab-specimenType-eu-lab (preferred)
Required Pattern: At least the following
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
.... coding 1..* Coding Code defined by a terminology system
Fixed Value: (Complex)
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... system 1..1 uri Identity of the terminology system
Fixed Value: http://snomed.info/sct
..... version 0..1 string Version of the system - if relevant
..... code 1..1 code Symbol in syntax defined by the system
Fixed Value: 1201985008
..... display 1..1 string Representation defined by the system
Fixed Value: Tissue block specimen (specimen)
..... userSelected 0..1 boolean If this coding was chosen directly by the user
.... text Σ 0..1 string Plain text representation of the concept
Required Pattern: Paraffin embedded block
... subject Σ 0..1 Reference(PatientLt(0.3.0) | Patient: Animal (EU core)(0.1.0)) Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance, a biologically-derived product, or a device
... parent S 1..1 Reference(Specimen (LT Lab)(0.1.0)) The parent specimen this block was cut from
... collection 0..1 BackboneElement Collection details
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
Constraints: ext-1
.... collector Σ 0..1 Reference(PractitionerRoleLt(0.3.0) | PractitionerLt(0.3.0)) Who collected the specimen
.... quantity S 0..1 SimpleQuantity(5.0.0) The number of slices
... processing S 0..* BackboneElement Processing and processing step details
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
Constraints: ext-1
.... method 0..1 CodeableConcept The method of block processing
Binding: SpecimenProcessingMethod (example): Type indicating the technique used to process the specimen.
Required Pattern: At least the following
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... coding 1..* Coding Code defined by a terminology system
Fixed Value: (Complex)
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
...... system 1..1 uri Identity of the terminology system
Fixed Value: http://snomed.info/sct
...... version 0..1 string Version of the system - if relevant
...... code 1..1 code Symbol in syntax defined by the system
Fixed Value: 702941008
...... display 1..1 string Representation defined by the system
Fixed Value: Paraffin embedding
...... userSelected 0..1 boolean If this coding was chosen directly by the user
..... text 0..1 string Plain text representation of the concept

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Specimen.accessionIdentifier.​use Base required IdentifierUse 📍5.0.0 FHIR Std.
Specimen.status Base required Specimen Status 📍5.0.0 FHIR Std.
Specimen.type Base preferred http://hl7.eu/fhir/laboratory/ValueSet/lab-specimenType-eu-lab Not State Unknown
Specimen.processing.​method Base example Specimen Processing Method 📍5.0.0 FHIR Std.

Constraints

Id Grade Path(s) Description Expression
dom-2 error Specimen If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Specimen If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().ofType(canonical) | %resource.descendants().ofType(uri) | %resource.descendants().ofType(url))) or descendants().where(reference = '#').exists() or descendants().where(ofType(canonical) = '#').exists() or descendants().where(ofType(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Specimen If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Specimen If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Specimen A resource should have narrative for robust management text.`div`.exists()
ele-1 error Specimen.implicitRules, Specimen.modifierExtension, Specimen.accessionIdentifier, Specimen.accessionIdentifier.use, Specimen.status, Specimen.type, Specimen.type.text, Specimen.subject, Specimen.parent, Specimen.collection, Specimen.collection.modifierExtension, Specimen.collection.collector, Specimen.collection.quantity, Specimen.processing, Specimen.processing.modifierExtension, Specimen.processing.method All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error Specimen.modifierExtension, Specimen.collection.modifierExtension, Specimen.processing.modifierExtension Must have either extensions or value[x], not both extension.exists() != value.exists()

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* SpecimenEu(0.2.0-ci) Laboratory Specimen
... accessionIdentifier S 0..1 Identifier The lab-assigned block ID (e.g., A1, B2)
.... use 0..1 code usual | official | temp | secondary | old (If known)
Required Pattern: secondary
... type 0..1 CodeableConcept Kind of material that forms the specimen
Required Pattern: At least the following
.... coding 1..* Coding Code defined by a terminology system
Fixed Value: (Complex)
..... system 1..1 uri Identity of the terminology system
Fixed Value: http://snomed.info/sct
..... code 1..1 code Symbol in syntax defined by the system
Fixed Value: 1201985008
..... display 1..1 string Representation defined by the system
Fixed Value: Tissue block specimen (specimen)
.... text 0..1 string Plain text representation of the concept
Required Pattern: Paraffin embedded block
... subject 0..1 Reference(PatientLt(0.3.0) | Patient: Animal (EU core)(0.1.0)) Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance, a biologically-derived product, or a device
... collection
.... collector 0..1 Reference(PractitionerRoleLt(0.3.0) | PractitionerLt(0.3.0)) Who collected the specimen
.... quantity S 0..1 SimpleQuantity(5.0.0) The number of slices
... processing S 0..* BackboneElement Processing and processing step details
.... method 0..1 CodeableConcept The method of block processing
Required Pattern: At least the following
..... coding 1..* Coding Code defined by a terminology system
Fixed Value: (Complex)
...... system 1..1 uri Identity of the terminology system
Fixed Value: http://snomed.info/sct
...... code 1..1 code Symbol in syntax defined by the system
Fixed Value: 702941008
...... display 1..1 string Representation defined by the system
Fixed Value: Paraffin embedding

doco Documentation for this format
NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* SpecimenEu(0.2.0-ci) Laboratory Specimen
... id Σ 0..1 id Logical id of this artifact
... meta Σ 0..1 Meta Metadata about the resource
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... text 0..1 Narrative Text summary of the resource, for human interpretation
This profile does not constrain the narrative in regard to content, language, or traceability to data elements
... contained 0..* Resource Contained, inline Resources
... extension 0..* Extension Additional content defined by implementations
Constraints: ext-1
... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored
Constraints: ext-1
... identifier Σ 0..* Identifier External Identifier
... accessionIdentifier SΣ 0..1 Identifier The lab-assigned block ID (e.g., A1, B2)
.... id 0..1 id Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
.... use ?!Σ 0..1 code usual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .
Required Pattern: secondary
.... type Σ 0..1 CodeableConcept Description of identifier
Binding: IdentifierTypeCodes (extensible): A coded type for an identifier that can be used to determine which identifier to use for a specific purpose.
.... system Σ 0..1 uri The namespace for the identifier value
Example General: http://www.acme.com/identifiers/patient
.... value ΣC 0..1 string The value that is unique
Example General: 123456
.... period Σ 0..1 Period Time period when id is/was valid for use
.... assigner Σ 0..1 Reference(Organization) Organization that issued id (may be just text)
... status ?!Σ 0..1 code available | unavailable | unsatisfactory | entered-in-error
Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
... type Σ 0..1 CodeableConcept Kind of material that forms the specimen
Binding: http://hl7.eu/fhir/laboratory/ValueSet/lab-specimenType-eu-lab (preferred)
Required Pattern: At least the following
.... id 0..1 id Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
.... coding Σ 0..* Coding Code defined by a terminology system

Fixed Value: (Complex)
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... system 1..1 uri Identity of the terminology system
Fixed Value: http://snomed.info/sct
..... version 0..1 string Version of the system - if relevant
..... code 1..1 code Symbol in syntax defined by the system
Fixed Value: 1201985008
..... display 1..1 string Representation defined by the system
Fixed Value: Tissue block specimen (specimen)
..... userSelected 0..1 boolean If this coding was chosen directly by the user
.... text Σ 0..1 string Plain text representation of the concept
Required Pattern: Paraffin embedded block
... subject Σ 0..1 Reference(PatientLt(0.3.0) | Patient: Animal (EU core)(0.1.0)) Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance, a biologically-derived product, or a device
... receivedTime Σ 0..1 dateTime The time when specimen is received by the testing laboratory
... parent S 1..1 Reference(Specimen (LT Lab)(0.1.0)) The parent specimen this block was cut from
... request 0..* Reference(ServiceRequest) Why the specimen was collected.
... combined Σ 0..1 code grouped | pooled
Binding: SpecimenCombined (required): Codes for the combined status of a specimen.
... role 0..* CodeableConcept The role the specimen serves
Binding: SpecimenRole (preferred): Codes describing specimen role.
... feature 0..* BackboneElement The physical feature of a specimen
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Constraints: ext-1
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
Constraints: ext-1
.... type 1..1 CodeableConcept Highlighted feature
Binding: SNOMEDCTBodyStructures (example): SNOMED CT Body site concepts
.... description 1..1 string Information about the feature
... collection 0..1 BackboneElement Collection details
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Constraints: ext-1
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
Constraints: ext-1
.... collector Σ 0..1 Reference(PractitionerRoleLt(0.3.0) | PractitionerLt(0.3.0)) Who collected the specimen
.... collected[x] Σ 0..1 Collection time
..... collectedDateTime dateTime
..... collectedPeriod Period
.... duration Σ 0..1 Duration How long it took to collect specimen
.... quantity S 0..1 SimpleQuantity(5.0.0) The number of slices
.... method 0..1 CodeableConcept Technique used to perform collection
Binding: FHIRSpecimenCollectionMethod (example): The technique that is used to perform the procedure.
.... device 0..1 CodeableReference(Device) Device used to perform collection
Binding Description: (example): The device that was used to obtain the specimen (e.g. a catheter or catheter part used to draw the blood via a central line).
.... procedure 0..1 Reference(Procedure) The procedure that collects the specimen
.... bodySite 0..1 CodeableReference(BodyStructure (EU core)(0.1.0)) Anatomical collection site
Binding: SNOMEDCTBodyStructures (preferred)
.... fastingStatus[x] Σ 0..1 Whether or how long patient abstained from food and/or drink
Binding: Hl7VSRelevantClincialInformation (3.0.0) (extensible): Codes describing the fasting status of the patient.
..... fastingStatusCodeableConcept CodeableConcept
..... fastingStatusDuration Duration
... processing S 0..* BackboneElement Processing and processing step details
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Constraints: ext-1
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
Constraints: ext-1
.... description 0..1 string Textual description of procedure
.... method 0..1 CodeableConcept The method of block processing
Binding: SpecimenProcessingMethod (example): Type indicating the technique used to process the specimen.
Required Pattern: At least the following
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... coding 1..* Coding Code defined by a terminology system
Fixed Value: (Complex)
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
...... system 1..1 uri Identity of the terminology system
Fixed Value: http://snomed.info/sct
...... version 0..1 string Version of the system - if relevant
...... code 1..1 code Symbol in syntax defined by the system
Fixed Value: 702941008
...... display 1..1 string Representation defined by the system
Fixed Value: Paraffin embedding
...... userSelected 0..1 boolean If this coding was chosen directly by the user
..... text 0..1 string Plain text representation of the concept
.... additive 0..* Reference(Substance | Substance: Specimen Additive Substance (Eu Lab)(0.2.0-ci)) Material used in the processing step
.... time[x] 0..1 Date and time of specimen processing
..... timeDateTime dateTime
..... timePeriod Period
... container 0..* BackboneElement Direct container of specimen (tube/slide, etc.)
.... id 0..1 string Unique id for inter-element referencing
.... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
..... extension:type 0..1 CodeableConcept Special handling of the specimen
URL: http://hl7.org/fhir/StructureDefinition/specimen-container-type
Binding: http://hl7.eu/fhir/laboratory/ValueSet/lab-specimenContainer-eu-lab (preferred)
Constraints: ext-1
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
Constraints: ext-1
.... device 1..1 Reference(Device) Device resource for the container
.... location 0..1 Reference(Location) Where the container is
.... specimenQuantity 0..1 SimpleQuantity(5.0.0) Quantity of specimen within container
... condition Σ 0..* CodeableConcept State of the specimen
Binding: Hl7VSSpecimenCondition (3.0.0) (extensible): Codes describing the state of the specimen.
... note 0..* Annotation Comments

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Specimen.language Base required All Languages 📍5.0.0 FHIR Std.
Specimen.accessionIdentifier.​use Base required IdentifierUse 📍5.0.0 FHIR Std.
Specimen.accessionIdentifier.​type Base extensible Identifier Type Codes 📍5.0.0 FHIR Std.
Specimen.status Base required Specimen Status 📍5.0.0 FHIR Std.
Specimen.type Base preferred http://hl7.eu/fhir/laboratory/ValueSet/lab-specimenType-eu-lab Not State Unknown
Specimen.combined Base required Specimen Combined 📍5.0.0 FHIR Std.
Specimen.role Base preferred Specimen Role 📍5.0.0 FHIR Std.
Specimen.feature.type Base example SNOMED CT Body Structures 📍5.0.0 FHIR Std.
Specimen.collection.​method Base example FHIR Specimen Collection Method 📍5.0.0 FHIR Std.
Specimen.collection.​device Base example Not State Unknown
Specimen.collection.​bodySite Base preferred SNOMED CT Body Structures 📍5.0.0 FHIR Std.
Specimen.collection.​fastingStatus[x] Base extensible hl7VS-relevantClincialInformation 📍3.0.0 THO v7.1
Specimen.processing.​method Base example Specimen Processing Method 📍5.0.0 FHIR Std.
Specimen.condition Base extensible hl7VS-specimenCondition 📍3.0.0 THO v7.1

Constraints

Id Grade Path(s) Description Expression
dom-2 error Specimen If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Specimen If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().ofType(canonical) | %resource.descendants().ofType(uri) | %resource.descendants().ofType(url))) or descendants().where(reference = '#').exists() or descendants().where(ofType(canonical) = '#').exists() or descendants().where(ofType(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Specimen If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Specimen If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Specimen A resource should have narrative for robust management text.`div`.exists()
ele-1 error Specimen.meta, Specimen.implicitRules, Specimen.language, Specimen.text, Specimen.extension, Specimen.modifierExtension, Specimen.identifier, Specimen.accessionIdentifier, Specimen.accessionIdentifier.extension, Specimen.accessionIdentifier.use, Specimen.accessionIdentifier.type, Specimen.accessionIdentifier.system, Specimen.accessionIdentifier.value, Specimen.accessionIdentifier.period, Specimen.accessionIdentifier.assigner, Specimen.status, Specimen.type, Specimen.type.extension, Specimen.type.coding, Specimen.type.text, Specimen.subject, Specimen.receivedTime, Specimen.parent, Specimen.request, Specimen.combined, Specimen.role, Specimen.feature, Specimen.feature.extension, Specimen.feature.modifierExtension, Specimen.feature.type, Specimen.feature.description, Specimen.collection, Specimen.collection.extension, Specimen.collection.modifierExtension, Specimen.collection.collector, Specimen.collection.collected[x], Specimen.collection.duration, Specimen.collection.quantity, Specimen.collection.method, Specimen.collection.device, Specimen.collection.procedure, Specimen.collection.bodySite, Specimen.collection.fastingStatus[x], Specimen.processing, Specimen.processing.extension, Specimen.processing.modifierExtension, Specimen.processing.description, Specimen.processing.method, Specimen.processing.additive, Specimen.processing.time[x], Specimen.container, Specimen.container.extension, Specimen.container.extension:type, Specimen.container.modifierExtension, Specimen.container.device, Specimen.container.location, Specimen.container.specimenQuantity, Specimen.condition, Specimen.note All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error Specimen.extension, Specimen.modifierExtension, Specimen.accessionIdentifier.extension, Specimen.type.extension, Specimen.feature.extension, Specimen.feature.modifierExtension, Specimen.collection.extension, Specimen.collection.modifierExtension, Specimen.processing.extension, Specimen.processing.modifierExtension, Specimen.container.extension, Specimen.container.extension:type, Specimen.container.modifierExtension Must have either extensions or value[x], not both extension.exists() != value.exists()

Pagrindinių elementų peržiūra

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* SpecimenEu(0.2.0-ci) Laboratory Specimen
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... contained 0..* Resource Contained, inline Resources
... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored
Constraints: ext-1
.... use ?!Σ 0..1 code usual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .
Required Pattern: secondary
... status ?!Σ 0..1 code available | unavailable | unsatisfactory | entered-in-error
Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
... type Σ 0..1 CodeableConcept Kind of material that forms the specimen
Binding: http://hl7.eu/fhir/laboratory/ValueSet/lab-specimenType-eu-lab (preferred)
Required Pattern: At least the following
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
.... coding 1..* Coding Code defined by a terminology system
Fixed Value: (Complex)
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... system 1..1 uri Identity of the terminology system
Fixed Value: http://snomed.info/sct
..... version 0..1 string Version of the system - if relevant
..... code 1..1 code Symbol in syntax defined by the system
Fixed Value: 1201985008
..... display 1..1 string Representation defined by the system
Fixed Value: Tissue block specimen (specimen)
..... userSelected 0..1 boolean If this coding was chosen directly by the user
.... text Σ 0..1 string Plain text representation of the concept
Required Pattern: Paraffin embedded block
... subject Σ 0..1 Reference(PatientLt(0.3.0) | Patient: Animal (EU core)(0.1.0)) Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance, a biologically-derived product, or a device
... parent S 1..1 Reference(Specimen (LT Lab)(0.1.0)) The parent specimen this block was cut from
... collection 0..1 BackboneElement Collection details
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
Constraints: ext-1
.... collector Σ 0..1 Reference(PractitionerRoleLt(0.3.0) | PractitionerLt(0.3.0)) Who collected the specimen
.... quantity S 0..1 SimpleQuantity(5.0.0) The number of slices
... processing S 0..* BackboneElement Processing and processing step details
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
Constraints: ext-1
.... method 0..1 CodeableConcept The method of block processing
Binding: SpecimenProcessingMethod (example): Type indicating the technique used to process the specimen.
Required Pattern: At least the following
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... coding 1..* Coding Code defined by a terminology system
Fixed Value: (Complex)
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
...... system 1..1 uri Identity of the terminology system
Fixed Value: http://snomed.info/sct
...... version 0..1 string Version of the system - if relevant
...... code 1..1 code Symbol in syntax defined by the system
Fixed Value: 702941008
...... display 1..1 string Representation defined by the system
Fixed Value: Paraffin embedding
...... userSelected 0..1 boolean If this coding was chosen directly by the user
..... text 0..1 string Plain text representation of the concept

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Specimen.accessionIdentifier.​use Base required IdentifierUse 📍5.0.0 FHIR Std.
Specimen.status Base required Specimen Status 📍5.0.0 FHIR Std.
Specimen.type Base preferred http://hl7.eu/fhir/laboratory/ValueSet/lab-specimenType-eu-lab Not State Unknown
Specimen.processing.​method Base example Specimen Processing Method 📍5.0.0 FHIR Std.

Constraints

Id Grade Path(s) Description Expression
dom-2 error Specimen If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Specimen If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().ofType(canonical) | %resource.descendants().ofType(uri) | %resource.descendants().ofType(url))) or descendants().where(reference = '#').exists() or descendants().where(ofType(canonical) = '#').exists() or descendants().where(ofType(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Specimen If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Specimen If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Specimen A resource should have narrative for robust management text.`div`.exists()
ele-1 error Specimen.implicitRules, Specimen.modifierExtension, Specimen.accessionIdentifier, Specimen.accessionIdentifier.use, Specimen.status, Specimen.type, Specimen.type.text, Specimen.subject, Specimen.parent, Specimen.collection, Specimen.collection.modifierExtension, Specimen.collection.collector, Specimen.collection.quantity, Specimen.processing, Specimen.processing.modifierExtension, Specimen.processing.method All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error Specimen.modifierExtension, Specimen.collection.modifierExtension, Specimen.processing.modifierExtension Must have either extensions or value[x], not both extension.exists() != value.exists()

Skirtumų rinkinių peržiūra

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* SpecimenEu(0.2.0-ci) Laboratory Specimen
... accessionIdentifier S 0..1 Identifier The lab-assigned block ID (e.g., A1, B2)
.... use 0..1 code usual | official | temp | secondary | old (If known)
Required Pattern: secondary
... type 0..1 CodeableConcept Kind of material that forms the specimen
Required Pattern: At least the following
.... coding 1..* Coding Code defined by a terminology system
Fixed Value: (Complex)
..... system 1..1 uri Identity of the terminology system
Fixed Value: http://snomed.info/sct
..... code 1..1 code Symbol in syntax defined by the system
Fixed Value: 1201985008
..... display 1..1 string Representation defined by the system
Fixed Value: Tissue block specimen (specimen)
.... text 0..1 string Plain text representation of the concept
Required Pattern: Paraffin embedded block
... subject 0..1 Reference(PatientLt(0.3.0) | Patient: Animal (EU core)(0.1.0)) Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance, a biologically-derived product, or a device
... collection
.... collector 0..1 Reference(PractitionerRoleLt(0.3.0) | PractitionerLt(0.3.0)) Who collected the specimen
.... quantity S 0..1 SimpleQuantity(5.0.0) The number of slices
... processing S 0..* BackboneElement Processing and processing step details
.... method 0..1 CodeableConcept The method of block processing
Required Pattern: At least the following
..... coding 1..* Coding Code defined by a terminology system
Fixed Value: (Complex)
...... system 1..1 uri Identity of the terminology system
Fixed Value: http://snomed.info/sct
...... code 1..1 code Symbol in syntax defined by the system
Fixed Value: 702941008
...... display 1..1 string Representation defined by the system
Fixed Value: Paraffin embedding

doco Documentation for this format

Momentinės kopijos peržiūraView

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* SpecimenEu(0.2.0-ci) Laboratory Specimen
... id Σ 0..1 id Logical id of this artifact
... meta Σ 0..1 Meta Metadata about the resource
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... text 0..1 Narrative Text summary of the resource, for human interpretation
This profile does not constrain the narrative in regard to content, language, or traceability to data elements
... contained 0..* Resource Contained, inline Resources
... extension 0..* Extension Additional content defined by implementations
Constraints: ext-1
... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored
Constraints: ext-1
... identifier Σ 0..* Identifier External Identifier
... accessionIdentifier SΣ 0..1 Identifier The lab-assigned block ID (e.g., A1, B2)
.... id 0..1 id Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
.... use ?!Σ 0..1 code usual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .
Required Pattern: secondary
.... type Σ 0..1 CodeableConcept Description of identifier
Binding: IdentifierTypeCodes (extensible): A coded type for an identifier that can be used to determine which identifier to use for a specific purpose.
.... system Σ 0..1 uri The namespace for the identifier value
Example General: http://www.acme.com/identifiers/patient
.... value ΣC 0..1 string The value that is unique
Example General: 123456
.... period Σ 0..1 Period Time period when id is/was valid for use
.... assigner Σ 0..1 Reference(Organization) Organization that issued id (may be just text)
... status ?!Σ 0..1 code available | unavailable | unsatisfactory | entered-in-error
Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
... type Σ 0..1 CodeableConcept Kind of material that forms the specimen
Binding: http://hl7.eu/fhir/laboratory/ValueSet/lab-specimenType-eu-lab (preferred)
Required Pattern: At least the following
.... id 0..1 id Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
.... coding Σ 0..* Coding Code defined by a terminology system

Fixed Value: (Complex)
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... system 1..1 uri Identity of the terminology system
Fixed Value: http://snomed.info/sct
..... version 0..1 string Version of the system - if relevant
..... code 1..1 code Symbol in syntax defined by the system
Fixed Value: 1201985008
..... display 1..1 string Representation defined by the system
Fixed Value: Tissue block specimen (specimen)
..... userSelected 0..1 boolean If this coding was chosen directly by the user
.... text Σ 0..1 string Plain text representation of the concept
Required Pattern: Paraffin embedded block
... subject Σ 0..1 Reference(PatientLt(0.3.0) | Patient: Animal (EU core)(0.1.0)) Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance, a biologically-derived product, or a device
... receivedTime Σ 0..1 dateTime The time when specimen is received by the testing laboratory
... parent S 1..1 Reference(Specimen (LT Lab)(0.1.0)) The parent specimen this block was cut from
... request 0..* Reference(ServiceRequest) Why the specimen was collected.
... combined Σ 0..1 code grouped | pooled
Binding: SpecimenCombined (required): Codes for the combined status of a specimen.
... role 0..* CodeableConcept The role the specimen serves
Binding: SpecimenRole (preferred): Codes describing specimen role.
... feature 0..* BackboneElement The physical feature of a specimen
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Constraints: ext-1
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
Constraints: ext-1
.... type 1..1 CodeableConcept Highlighted feature
Binding: SNOMEDCTBodyStructures (example): SNOMED CT Body site concepts
.... description 1..1 string Information about the feature
... collection 0..1 BackboneElement Collection details
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Constraints: ext-1
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
Constraints: ext-1
.... collector Σ 0..1 Reference(PractitionerRoleLt(0.3.0) | PractitionerLt(0.3.0)) Who collected the specimen
.... collected[x] Σ 0..1 Collection time
..... collectedDateTime dateTime
..... collectedPeriod Period
.... duration Σ 0..1 Duration How long it took to collect specimen
.... quantity S 0..1 SimpleQuantity(5.0.0) The number of slices
.... method 0..1 CodeableConcept Technique used to perform collection
Binding: FHIRSpecimenCollectionMethod (example): The technique that is used to perform the procedure.
.... device 0..1 CodeableReference(Device) Device used to perform collection
Binding Description: (example): The device that was used to obtain the specimen (e.g. a catheter or catheter part used to draw the blood via a central line).
.... procedure 0..1 Reference(Procedure) The procedure that collects the specimen
.... bodySite 0..1 CodeableReference(BodyStructure (EU core)(0.1.0)) Anatomical collection site
Binding: SNOMEDCTBodyStructures (preferred)
.... fastingStatus[x] Σ 0..1 Whether or how long patient abstained from food and/or drink
Binding: Hl7VSRelevantClincialInformation (3.0.0) (extensible): Codes describing the fasting status of the patient.
..... fastingStatusCodeableConcept CodeableConcept
..... fastingStatusDuration Duration
... processing S 0..* BackboneElement Processing and processing step details
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Constraints: ext-1
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
Constraints: ext-1
.... description 0..1 string Textual description of procedure
.... method 0..1 CodeableConcept The method of block processing
Binding: SpecimenProcessingMethod (example): Type indicating the technique used to process the specimen.
Required Pattern: At least the following
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... coding 1..* Coding Code defined by a terminology system
Fixed Value: (Complex)
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
...... system 1..1 uri Identity of the terminology system
Fixed Value: http://snomed.info/sct
...... version 0..1 string Version of the system - if relevant
...... code 1..1 code Symbol in syntax defined by the system
Fixed Value: 702941008
...... display 1..1 string Representation defined by the system
Fixed Value: Paraffin embedding
...... userSelected 0..1 boolean If this coding was chosen directly by the user
..... text 0..1 string Plain text representation of the concept
.... additive 0..* Reference(Substance | Substance: Specimen Additive Substance (Eu Lab)(0.2.0-ci)) Material used in the processing step
.... time[x] 0..1 Date and time of specimen processing
..... timeDateTime dateTime
..... timePeriod Period
... container 0..* BackboneElement Direct container of specimen (tube/slide, etc.)
.... id 0..1 string Unique id for inter-element referencing
.... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
..... extension:type 0..1 CodeableConcept Special handling of the specimen
URL: http://hl7.org/fhir/StructureDefinition/specimen-container-type
Binding: http://hl7.eu/fhir/laboratory/ValueSet/lab-specimenContainer-eu-lab (preferred)
Constraints: ext-1
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
Constraints: ext-1
.... device 1..1 Reference(Device) Device resource for the container
.... location 0..1 Reference(Location) Where the container is
.... specimenQuantity 0..1 SimpleQuantity(5.0.0) Quantity of specimen within container
... condition Σ 0..* CodeableConcept State of the specimen
Binding: Hl7VSSpecimenCondition (3.0.0) (extensible): Codes describing the state of the specimen.
... note 0..* Annotation Comments

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Specimen.language Base required All Languages 📍5.0.0 FHIR Std.
Specimen.accessionIdentifier.​use Base required IdentifierUse 📍5.0.0 FHIR Std.
Specimen.accessionIdentifier.​type Base extensible Identifier Type Codes 📍5.0.0 FHIR Std.
Specimen.status Base required Specimen Status 📍5.0.0 FHIR Std.
Specimen.type Base preferred http://hl7.eu/fhir/laboratory/ValueSet/lab-specimenType-eu-lab Not State Unknown
Specimen.combined Base required Specimen Combined 📍5.0.0 FHIR Std.
Specimen.role Base preferred Specimen Role 📍5.0.0 FHIR Std.
Specimen.feature.type Base example SNOMED CT Body Structures 📍5.0.0 FHIR Std.
Specimen.collection.​method Base example FHIR Specimen Collection Method 📍5.0.0 FHIR Std.
Specimen.collection.​device Base example Not State Unknown
Specimen.collection.​bodySite Base preferred SNOMED CT Body Structures 📍5.0.0 FHIR Std.
Specimen.collection.​fastingStatus[x] Base extensible hl7VS-relevantClincialInformation 📍3.0.0 THO v7.1
Specimen.processing.​method Base example Specimen Processing Method 📍5.0.0 FHIR Std.
Specimen.condition Base extensible hl7VS-specimenCondition 📍3.0.0 THO v7.1

Constraints

Id Grade Path(s) Description Expression
dom-2 error Specimen If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Specimen If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().ofType(canonical) | %resource.descendants().ofType(uri) | %resource.descendants().ofType(url))) or descendants().where(reference = '#').exists() or descendants().where(ofType(canonical) = '#').exists() or descendants().where(ofType(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Specimen If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Specimen If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Specimen A resource should have narrative for robust management text.`div`.exists()
ele-1 error Specimen.meta, Specimen.implicitRules, Specimen.language, Specimen.text, Specimen.extension, Specimen.modifierExtension, Specimen.identifier, Specimen.accessionIdentifier, Specimen.accessionIdentifier.extension, Specimen.accessionIdentifier.use, Specimen.accessionIdentifier.type, Specimen.accessionIdentifier.system, Specimen.accessionIdentifier.value, Specimen.accessionIdentifier.period, Specimen.accessionIdentifier.assigner, Specimen.status, Specimen.type, Specimen.type.extension, Specimen.type.coding, Specimen.type.text, Specimen.subject, Specimen.receivedTime, Specimen.parent, Specimen.request, Specimen.combined, Specimen.role, Specimen.feature, Specimen.feature.extension, Specimen.feature.modifierExtension, Specimen.feature.type, Specimen.feature.description, Specimen.collection, Specimen.collection.extension, Specimen.collection.modifierExtension, Specimen.collection.collector, Specimen.collection.collected[x], Specimen.collection.duration, Specimen.collection.quantity, Specimen.collection.method, Specimen.collection.device, Specimen.collection.procedure, Specimen.collection.bodySite, Specimen.collection.fastingStatus[x], Specimen.processing, Specimen.processing.extension, Specimen.processing.modifierExtension, Specimen.processing.description, Specimen.processing.method, Specimen.processing.additive, Specimen.processing.time[x], Specimen.container, Specimen.container.extension, Specimen.container.extension:type, Specimen.container.modifierExtension, Specimen.container.device, Specimen.container.location, Specimen.container.specimenQuantity, Specimen.condition, Specimen.note All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error Specimen.extension, Specimen.modifierExtension, Specimen.accessionIdentifier.extension, Specimen.type.extension, Specimen.feature.extension, Specimen.feature.modifierExtension, Specimen.collection.extension, Specimen.collection.modifierExtension, Specimen.processing.extension, Specimen.processing.modifierExtension, Specimen.container.extension, Specimen.container.extension:type, Specimen.container.modifierExtension Must have either extensions or value[x], not both extension.exists() != value.exists()

 

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