Validation Results for GenomicsReporting

Generated Tue Mar 31 20:39:48 UTC 2026, FHIR version 6.0.0-ballot3 for hl7.fhir.uv.genomics-reporting#4.0.0-cibuild (canonical = http://hl7.org/fhir/uv/genomics-reporting (history)). See Full QA Report & IP

Quality Checks
Publisher Version:IG Publisher Version: v2.2.4
Publication Code:genomics-reporting . PackageId = hl7.fhir.uv.genomics-reporting, Canonical = http://hl7.org/fhir/uv/genomics-reporting
Realm Check for UV:
  • n/a
Language Info:This IG has no language information
Publication Request:
package-idhl7.fhir.uv.genomics-reporting
version4.0.0-cibuild
pathhttp://hl7.org/fhir/uv/genomics-reporting/STU4-snapshot
Pub-Modeworking release
statusballot
Release-LabelCI Build
Sequence (Group)STU4 (current: 'STU3', others = 'STU 1','STU 2','STU 3')
descCI Build - STU 4.0.0 Development (FHIR R6)
descmd

CI Build - STU 4.0.0 Development (FHIR R6).

RelatedIgs(None Found)
No Messages found - all good
Supressed Messages:55 Suppressed Issues
Dependency Checks:
PackageVersionFHIRCanonicalWeb BaseComment
.. hl7.fhir.uv.genomics-reporting4.0.0-cibuildR6http://hl7.org/fhir/uv/genomics-reporting
... hl7.terminology.r57.1.0 MR5http://terminology.hl7.orghttp://terminology.hl7.org/7.1.0FHIR Version Mismatch
.... hl7.fhir.uv.extensions.r55.2.0 MR5http://hl7.org/fhir/extensionshttp://hl7.org/fhir/extensions/5.2.0FHIR Version Mismatch
... hl7.fhir.uv.extensions.r55.2.0 MR5http://hl7.org/fhir/extensionshttp://hl7.org/fhir/extensions/5.2.0FHIR Version Mismatch (as above)
... hl7.fhir.uv.tools.r51.1.2 MR5http://hl7.org/fhir/toolshttp://hl7.org/fhir/tools/1.1.2Internal Dependency. FHIR Version Mismatch
Templates: hl7.fhir.template#1.0.0 -> hl7.base.template#1.0.0 -> fhir.base.template#1.0.0
Related IGs:n/a
Dependent IGs:no references
Global Profiles:(none declared)
Terminology Server(s):https://tx.fhir.org/r5 (details)
HTA Analysis:All OK
R5 Dependencies:(none)
Draft Dependencies:
Modifier Extensions:(none)
Previous Version Comparison: Comparison with version 3.0.0
IPA Comparison: n/a
IPS Comparison: n/a
Validation Flags: On: autoLoad; Off: hintAboutNonMustSupport, anyExtensionsAllowed, checkAggregation, showReferenceMessages, noExperimentalContent, displayWarnings
Summary: errors = 4, warn = 420, info = 15, broken links = 0, pinned = 0 (when multiples).
FilenameErrorsWarningsHints
Build Errors3110
/scratch/repo/fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-010210
/scratch/repo/fsh-generated/resources/Bundle-bundle-CYP2C190740
/scratch/repo/fsh-generated/resources/Bundle-bundle-cgexample0150
/scratch/repo/fsh-generated/resources/Bundle-bundle-cgexample-withGrouping0150
/scratch/repo/fsh-generated/resources/Bundle-bundle-complexVariant-nonHGVS030
/scratch/repo/fsh-generated/resources/Bundle-bundle-compound-heterozygote010
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncology-diagnostic020
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncology-report-example0460
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncologyexamples-r4030
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncologyexamples-r4-withGrouping030
/scratch/repo/fsh-generated/resources/Bundle-bundle-pgxexample0120
/scratch/repo/fsh-generated/resources/Bundle-bundle-prequel-prenatal-trisomy13061
/scratch/repo/fsh-generated/resources/Bundle-bundle-sequence-phase-relation-CYP2C19020
/scratch/repo/fsh-generated/resources/ConceptMap-dna-change-type-map071
/scratch/repo/fsh-generated/resources/GenomicStudy-lungMass040
/scratch/repo/fsh-generated/resources/GenomicStudy-somaticStudy060
/scratch/repo/fsh-generated/resources/ImplementationGuide-genomics-reporting110
/scratch/repo/fsh-generated/resources/Observation-ATR-insertion-molc030
/scratch/repo/fsh-generated/resources/Observation-ATR-insertion-var040
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-molc010
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-var020
/scratch/repo/fsh-generated/resources/Observation-ExampleGermlineCNV020
/scratch/repo/fsh-generated/resources/Observation-ExampleGermlineDEL020
/scratch/repo/fsh-generated/resources/Observation-ExampleGermlineINV020
/scratch/repo/fsh-generated/resources/Observation-ExampleSomaticCNV020
/scratch/repo/fsh-generated/resources/Observation-ExampleSomaticDEL020
/scratch/repo/fsh-generated/resources/Observation-ExampleSomaticINV020
/scratch/repo/fsh-generated/resources/Observation-Genotype-Clinical-Trial-Example-using-haplotypes010
/scratch/repo/fsh-generated/resources/Observation-GenotypeExample1020
/scratch/repo/fsh-generated/resources/Observation-GenotypeExamplePharmVar010
/scratch/repo/fsh-generated/resources/Observation-HER2byImmuneStainExample010
/scratch/repo/fsh-generated/resources/Observation-HER2byImmunoassayExample010
/scratch/repo/fsh-generated/resources/Observation-HLA-A-haplotype1030
/scratch/repo/fsh-generated/resources/Observation-HLA-A-haplotype2030
/scratch/repo/fsh-generated/resources/Observation-HLA-B-haplotype1020
/scratch/repo/fsh-generated/resources/Observation-HLA-B-haplotype2020
/scratch/repo/fsh-generated/resources/Observation-HLA-C-haplotype1020
/scratch/repo/fsh-generated/resources/Observation-HLA-C-haplotype2020
/scratch/repo/fsh-generated/resources/Observation-HaplotypeExamplePharmVar01020
/scratch/repo/fsh-generated/resources/Observation-HaplotypeExamplePharmVar02020
/scratch/repo/fsh-generated/resources/Observation-HaplotypeSet-Clinical-Trial-Example-1of2020
/scratch/repo/fsh-generated/resources/Observation-HaplotypeSet-Clinical-Trial-Example-2of2020
/scratch/repo/fsh-generated/resources/Observation-ISCN-CMLExample010
/scratch/repo/fsh-generated/resources/Observation-ISCN-NormalExample010
/scratch/repo/fsh-generated/resources/Observation-MSH2-del-molc010
/scratch/repo/fsh-generated/resources/Observation-MSH2-del-var040
/scratch/repo/fsh-generated/resources/Observation-MultipleRepeatExpansions020
/scratch/repo/fsh-generated/resources/Observation-NOTCH1-uncertain-molc020
/scratch/repo/fsh-generated/resources/Observation-NOTCH1-uncertain-var030
/scratch/repo/fsh-generated/resources/Observation-NTHL1-snv-molc010
/scratch/repo/fsh-generated/resources/Observation-NTHL1-snv-var030
/scratch/repo/fsh-generated/resources/Observation-PDL1Example010
/scratch/repo/fsh-generated/resources/Observation-Pgx-geno-1001020
/scratch/repo/fsh-generated/resources/Observation-Pgx-geno-1002010
/scratch/repo/fsh-generated/resources/Observation-Pgx-geno-1003010
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1011030
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1012030
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1013030
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1014030
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1015030
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1016040
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1017040
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1018040
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1019030
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1020040
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1021040
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion010
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion-therapuTrial010
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion-var010
/scratch/repo/fsh-generated/resources/Observation-RepeatExpansion030
/scratch/repo/fsh-generated/resources/Observation-SNVexample020
/scratch/repo/fsh-generated/resources/Observation-STAG2-insertion-molc020
/scratch/repo/fsh-generated/resources/Observation-STAG2-insertion-var040
/scratch/repo/fsh-generated/resources/Observation-Therapeutic-Implication-Clinical-Trial-2010
/scratch/repo/fsh-generated/resources/Observation-Therapeutic-Implication-Clinical-Trial-Somatic010
/scratch/repo/fsh-generated/resources/Observation-Variant-Somatic-Clinical-Trial010
/scratch/repo/fsh-generated/resources/Observation-VariantExample010
/scratch/repo/fsh-generated/resources/Observation-VariantExample2010
/scratch/repo/fsh-generated/resources/Observation-ZFHX3-uncertain-molc020
/scratch/repo/fsh-generated/resources/Observation-ZFHX3-uncertain-var030
/scratch/repo/fsh-generated/resources/Observation-genotype-hla-a-glstring-r4030
/scratch/repo/fsh-generated/resources/Observation-haplotype-hla-a-1-r4020
/scratch/repo/fsh-generated/resources/Observation-molec-conseq1040
/scratch/repo/fsh-generated/resources/Observation-molec-conseq2020
/scratch/repo/fsh-generated/resources/Observation-molec-conseq3020
/scratch/repo/fsh-generated/resources/Observation-molec-conseq4020
/scratch/repo/fsh-generated/resources/Observation-obs-idh-ex030
/scratch/repo/fsh-generated/resources/Observation-obs1-interact-smn1-smn2030
/scratch/repo/fsh-generated/resources/Observation-obs2-interact-smn1-smn2030
/scratch/repo/fsh-generated/resources/Observation-variant-with-molec-consequences010
/scratch/repo/fsh-generated/resources/Parameters-FindStudyMetadataOutput040
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectDxImplicationsOutput010
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectHaplotypesOutput060
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectMolecConseqOutput0110
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectSpecificHaplotypesOutput030
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectSpecificVariantsOutput010
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectStructuralIntersectingVariantsOutput020
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectStructuralSubsumingVariantsOutput020
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectTxImplicationsOutput010
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectVariantsOutput010
/scratch/repo/fsh-generated/resources/StructureDefinition-genomic-data-file010
/scratch/repo/fsh-generated/resources/ValueSet-condition-inheritance-mode-vs011
/scratch/repo/fsh-generated/resources/ValueSet-dna-change-type-vs010
/scratch/repo/fsh-generated/resources/ValueSet-functional-effect-vs010
/scratch/repo/fsh-generated/resources/ValueSet-hgnc-vs010
/scratch/repo/fsh-generated/resources/ValueSet-molecular-consequence-vs010

n/a Show Validation Information

ImplementationGuide/genomics-reportingerrorThis IG is version 6.0.0-ballot3, while the IG 'hl7.terminology.r5' is from version 5.0.0
ImplementationGuide/genomics-reportingerrorThis IG is version 6.0.0-ballot3, while the IG 'hl7.fhir.uv.extensions.r5' is from version 5.0.0
ImplementationGuide/genomics-reportingerrorThis IG is version 6.0.0-ballot3, while the IG 'hl7.fhir.uv.tools.r5' is from version 5.0.0
warningThe jira specification file appears to be out of date with the versions, artifacts and pages currently defined in the IG. A proposed revised file to be reviewed and, if appropriate, submitted as a pull request against the XML folder in https://github.com/HL7/JIRA-Spec-Artifacts. To see the differences, perform a file compare on 'template/jira-current.xml' (a normalized view of what is in Github) and 'template/jira-new.xml' (reflects current IG content)
CodeSystem-knowledge-base-cs.htmlinformationThe html source contains the word 'SHALL' but it is not in a text phrase marked as a conformance clause: ' This example code systems provides examples on how to properly display the knowledge base version number. Version numbers should always be followed by the letter v and calendar dates are displayed Month Day Year. For clarity the month SHALL be written in full. ' CONFORMANCE_STATEMENT_WORD
StructureDefinition-coded-annotation​.htmlinformationThe html source contains the word 'SHALL' but it is not in a text phrase marked as a conformance clause: 'If there is a possibility of transporting the content of the note in a structured manner the usage of CodedAnnotation is forbidden and the corresponding data structures SHALL be used. For example, if the text to send resembles the interpretation or impression of the Observation, this guide adds Observation.component slice for conclusion-string which is more appropriate than a note. This would include text like interpretative information (typically canned) about a variant identified in the patient. This slice is defined in the Genomic Base profile, which every observation builds upon. Therefore, this component is a defined slice on all observations profiles defined in this Implementation Guide.' CONFORMANCE_STATEMENT_WORD
StructureDefinition-genotype.htmlinformationThe html source contains the word 'SHOULD' but it is not in a text phrase marked as a conformance clause: 'For Pharmacogenomics, implementers SHOULD send coded haplotypes, and for genotypes (diplotypes) MAY use a simple, human readable grammar of:' CONFORMANCE_STATEMENT_WORD
StructureDefinition-haplotype.htmlinformationThe html source contains the word 'SHOULD' but it is not in a text phrase marked as a conformance clause: 'For Pharmacogenomics, implementers SHOULD send coded haplotypes. Here is an example using PharmVar:' CONFORMANCE_STATEMENT_WORD
StructureDefinition-implication.htmlinformationThe html source contains the word 'SHALL' but it is not in a text phrase marked as a conformance clause: 'Where implications have fields with cardinality > 1, the inclusion of multiple values within a field SHALL indicate an 'AND' condition. An 'OR' condition SHALL be represented by multiple observation instances.' CONFORMANCE_STATEMENT_WORD
StructureDefinition-therapeutic-implication​.htmlinformationThe html source contains the word 'SHALL' but it is not in a text phrase marked as a conformance clause: 'There are two ways to communicate details about a medication whose implication is being described. The profile component medication-assessed is the place to communicate a simple code for the medication. If more detail about the medication is to be shared, use the extension named medication-assessed-reference. The extension can refer to a Medication or MedicationKnowledge resource. This might be used to share specific classification details if they are important as part of the implication being described. It is important to note that since there two ways to do this, implementers SHALL ensure consistent usage. If both the extension and component are used at the same time, they SHALL deliver the same medication. Because this is an international profile, no guidance is provided on drug coding systems.' CONFORMANCE_STATEMENT_WORD
artifacts.htmlinformationThe html source contains the word 'SHALL' but it is not in a text phrase marked as a conformance clause: 'This example code systems provides examples on how to properly display the knowledge base version number. Version numbers should always be followed by the letter v and calendar dates are displayed Month Day Year. For clarity the month SHALL be written in full.' CONFORMANCE_STATEMENT_WORD
general.htmlinformationThe html source contains the word 'SHOULD' but it is not in a text phrase marked as a conformance clause: 'The GenomicStudy instance SHOULD be referenced from a report and CAN be referenced by various observations.' CONFORMANCE_STATEMENT_WORD
pharmacogenomics.htmlinformationThe html source contains the word 'MAY' but it is not in a text phrase marked as a conformance clause: 'Genotype names such as star-alleles can appear in PGx reports either with or without a full description of the underlying coded haplotypes and observed variants. Genotype names MAY be coded, but will oftentimes be textual descriptions only. PGx guidance is often available at the level of these genotypes.' CONFORMANCE_STATEMENT_WORD
sequencing.htmlinformationThe html source contains the word 'MAY' but it is not in a text phrase marked as a conformance clause: 'For each variant reporting pattern, different components MUST be used to properly define the variant where possible. Other components MAY be used to provide additional information for cross referencing external sources or increasing human readability of the instance.' CONFORMANCE_STATEMENT_WORD

fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.json Show Validation Information (74)

PathSeverityMessageValidating
Bundle​.entry[5]​.resource​/*Observation​/CG-IG-HLA-FullBundle-01-10*​/​.value​.ofType(CodeableConcept)​.coding[0]​.system (l274​/c10)warningA definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[5]​.resource​/*Observation​/CG-IG-HLA-FullBundle-01-10*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l301​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMSpecimen
Bundle​.entry[5]​.resource​/*Observation​/CG-IG-HLA-FullBundle-01-10*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l301​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Specimen
Bundle​.entry[6]​.resource​/*Observation​/CG-IG-HLA-FullBundle-01-11*​/​.value​.ofType(CodeableConcept)​.coding[0]​.system (l368​/c10)warningA definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[6]​.resource​/*Observation​/CG-IG-HLA-FullBundle-01-11*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l395​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMSpecimen
Bundle​.entry[6]​.resource​/*Observation​/CG-IG-HLA-FullBundle-01-11*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l395​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Specimen
Bundle​.entry[7]​.resource​/*Observation​/CG-IG-HLA-FullBundle-01-12*​/​.value​.ofType(CodeableConcept)​.coding[0]​.system (l469​/c10)warningA definition for CodeSystem 'http://glstring.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[7]​.resource​/*Observation​/CG-IG-HLA-FullBundle-01-12*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l507​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMHaplotype
Bundle​.entry[7]​.resource​/*Observation​/CG-IG-HLA-FullBundle-01-12*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l507​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Haplotype
Bundle​.entry[8]​.resource​/*Observation​/CG-IG-HLA-FullBundle-01-17*​/​.value​.ofType(CodeableConcept)​.coding[0] (l574​/c10)warningA definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated Organization
Bundle​.entry[8]​.resource​/*Observation​/CG-IG-HLA-FullBundle-01-17*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l600​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Specimen
Bundle​.entry[9]​.resource​/*Observation​/CG-IG-HLA-FullBundle-01-18*​/​.value​.ofType(CodeableConcept)​.coding[0] (l667​/c10)warningA definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated Organization
Bundle​.entry[9]​.resource​/*Observation​/CG-IG-HLA-FullBundle-01-18*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l694​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Specimen
Bundle​.entry[10]​.resource​/*Observation​/CG-IG-HLA-FullBundle-01-19*​/​.value​.ofType(CodeableConcept)​.coding[0] (l768​/c10)warningA definition for CodeSystem 'http://glstring.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[10]​.resource​/*Observation​/CG-IG-HLA-FullBundle-01-19*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l806​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Haplotype
Bundle​.entry[11]​.resource​/*Observation​/CG-IG-HLA-FullBundle-01-24*​/​.value​.ofType(CodeableConcept)​.coding[0] (l873​/c10)warningA definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated Organization
Bundle​.entry[11]​.resource​/*Observation​/CG-IG-HLA-FullBundle-01-24*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l900​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Specimen
Bundle​.entry[12]​.resource​/*Observation​/CG-IG-HLA-FullBundle-01-25*​/​.value​.ofType(CodeableConcept)​.coding[0] (l967​/c10)warningA definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated Organization
Bundle​.entry[12]​.resource​/*Observation​/CG-IG-HLA-FullBundle-01-25*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l994​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Specimen
Bundle​.entry[13]​.resource​/*Observation​/CG-IG-HLA-FullBundle-01-26*​/​.value​.ofType(CodeableConcept)​.coding[0] (l1068​/c10)warningA definition for CodeSystem 'http://glstring.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[13]​.resource​/*Observation​/CG-IG-HLA-FullBundle-01-26*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l1106​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Haplotype

fsh-generated/resources/Bundle-bundle-CYP2C19.json Show Validation Information (747)

PathSeverityMessageValidating
Bundle​.entry[0]​.resource​/*Observation​/dv-5c7e9e1ca62b5*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l94​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[1]​.resource​/*Observation​/dv-5c7e9e1ca6342*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l276​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[2]​.resource​/*Observation​/dv-5c7e9e1ca63bf*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l458​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[3]​.resource​/*Observation​/dv-5c7e9e1ca643a*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l640​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[4]​.resource​/*Observation​/dv-5c7e9e1ca64b5*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l822​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[5]​.resource​/*Observation​/dv-5c7e9e1ca6531*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l1004​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[6]​.resource​/*Observation​/dv-5c7e9e1ca65ac*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l1186​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[7]​.resource​/*Observation​/dv-5c7e9e1ca6627*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l1368​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[8]​.resource​/*Observation​/dv-5c7e9e1ca66a1*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l1550​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[9]​.resource​/*Observation​/dv-5c7e9e1ca671c*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l1732​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[10]​.resource​/*Observation​/dv-5c7e9e1ca6797*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l1914​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[11]​.resource​/*Observation​/dv-5c7e9e1ca6812*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l2096​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[12]​.resource​/*Observation​/dv-5c7e9e1ca688c*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l2278​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[13]​.resource​/*Observation​/dv-5c7e9e1ca6922*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l2460​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[14]​.resource​/*Observation​/dv-5c7e9e1ca69a3*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l2642​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[15]​.resource​/*Observation​/dv-5c7e9e1ca6a1d*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l2824​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[16]​.resource​/*Observation​/dv-5c7e9e1ca6a97*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l3006​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[17]​.resource​/*Observation​/dv-5c7e9e1ca6b11*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l3188​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[18]​.resource​/*Observation​/dv-5c7e9e1ca6b86*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l3370​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[19]​.resource​/*Observation​/dv-5c7e9e1ca6c31*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l3552​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[20]​.resource​/*Observation​/dv-5c7e9e1ca6ccc*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l3734​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[21]​.resource​/*Observation​/dv-5c7e9e1ca6d4b*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l3916​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[22]​.resource​/*Observation​/dv-5c7e9e1ca6de3*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l4098​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[23]​.resource​/*Observation​/dv-5c7e9e1ca6e86*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l4280​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[24]​.resource​/*Observation​/dv-5c7e9e1ca6f11*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l4462​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[25]​.resource​/*Observation​/dv-5c7e9e1ca6fa5*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l4644​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[26]​.resource​/*Observation​/dv-5c7e9e1ca7025*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l4826​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[27]​.resource​/*Observation​/dv-5c7e9e1ca70a2*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l5008​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[28]​.resource​/*Observation​/dv-5c7e9e1ca7141*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l5190​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[29]​.resource​/*Observation​/dv-5c7e9e1ca71bf*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l5372​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[30]​.resource​/*Observation​/dv-5c7e9e1ca724a*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l5554​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[31]​.resource​/*Observation​/dv-5c7e9e1ca72e4*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l5736​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[32]​.resource​/*Observation​/dv-5c7e9e1ca7377*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l5918​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[33]​.resource​/*Observation​/dv-5c7e9e1ca740a*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l6100​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[34]​.resource​/*Observation​/dv-5c7e9e1ca7497*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l6282​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[35]​.resource​/*Observation​/dv-5c7e9e1ca7513*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l6464​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[36]​.resource​/*Observation​/dv-5c7e9e1ca758e*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l6646​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[37]​.resource​/*Observation​/dv-5c7e9e1ca7609*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l6828​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[38]​.resource​/*Observation​/dv-5c7e9e1ca7684*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l7010​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[39]​.resource​/*Observation​/dv-5c7e9e1ca76ff*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l7192​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[40]​.resource​/*Observation​/dv-5c7e9e1ca7779*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l7374​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[41]​.resource​/*Observation​/dv-5c7e9e1ca77f4*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l7556​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[42]​.resource​/*Observation​/dv-5c7e9e1ca786f*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l7738​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[43]​.resource​/*Observation​/dv-5c7e9e1ca78eb*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l7920​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[44]​.resource​/*Observation​/dv-5c7e9e1ca7967*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l8102​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[45]​.resource​/*Observation​/dv-5c7e9e1ca79ef*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l8284​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[46]​.resource​/*Observation​/dv-5c7e9e1ca7a79*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l8466​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[47]​.resource​/*Observation​/dv-5c7e9e1ca7afb*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l8648​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[48]​.resource​/*Observation​/dv-5c7e9e1ca7bcb*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l8830​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[49]​.resource​/*Observation​/dv-5c7e9e1ca7c49*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l9012​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[50]​.resource​/*Observation​/dv-5c7e9e1ca7cd3*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l9194​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[51]​.resource​/*Observation​/dv-5c7e9e1ca7d94*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l9376​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[52]​.resource​/*Observation​/dv-5c7e9e1ca7e45*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l9558​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[53]​.resource​/*Observation​/dv-5c7e9e1ca7ed6*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l9740​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[54]​.resource​/*Observation​/dv-5c7e9e1ca7f69*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l9922​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[55]​.resource​/*Observation​/dv-5c7e9e1ca7ffd*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l10104​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[56]​.resource​/*Observation​/dv-5c7e9e1ca8085*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l10286​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[57]​.resource​/*Observation​/dv-5c7e9e1ca811f*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l10468​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[58]​.resource​/*Observation​/dv-5c7e9e1ca81b9*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l10650​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[59]​.resource​/*Observation​/dv-5c7e9e1ca8252*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l10832​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[60]​.resource​/*Observation​/dv-5c7e9e1ca82e4*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l11014​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[61]​.resource​/*Observation​/dv-5c7e9e1ca837c*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l11196​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[62]​.resource​/*Observation​/dv-5c7e9e1ca8410*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l11378​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[63]​.resource​/*Observation​/dv-5c7e9e1ca8493*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l11560​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[64]​.resource​/*Observation​/dv-5c7e9e1ca8514*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l11742​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[65]​.resource​/*Observation​/dv-5c7e9e1ca8596*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l11924​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[66]​.resource​/*Observation​/dv-5c7e9e1ca8618*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l12106​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[67]​.resource​/*Observation​/dv-5c7e9e1ca869c*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l12288​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[68]​.resource​/*Observation​/dv-5c7e9e1ca871e*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l12470​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[69]​.resource​/*Observation​/dv-5c7e9e1ca879f*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l12652​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[70]​.resource​/*Observation​/dv-5c7e9e1ca8820*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l12834​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[71]​.resource​/*Observation​/dv-5c7e9e1ca88a5*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l13016​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[72]​.resource​/*Observation​/dv-5c7e9e1ca8927*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l13198​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[73]​.resource​/*Observation​/dv-5c7e9e1ca89a8*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l13380​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization

fsh-generated/resources/Bundle-bundle-cgexample.json Show Validation Information (95)

PathSeverityMessageValidating
Bundle​.entry[5]​.resource​/*Observation​/discrete-variant*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l238​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMPatient
Bundle​.entry[5]​.resource​/*Observation​/discrete-variant*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l257​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Patient
Bundle​.entry[5]​.resource​/*Observation​/discrete-variant*​/​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l276​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Patient
Bundle​.entry[5]​.resource​/*Observation​/discrete-variant*​/​.component[3]​.value​.ofType(CodeableConcept)​.coding[0] (l294​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Patient
Bundle​.entry[5]​.resource​/*Observation​/discrete-variant*​/​.component[5]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l330​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/projects/SNP' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMPatient
Bundle​.entry[6]​.resource​/*Observation​/dis-path*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l678​/c14)warningA definition for CodeSystem 'http://purl.obolibrary.org/obo/mondo.owl' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMVariant
Bundle​.entry[9]​.resource​/*Observation​/complex-component-D*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l925​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated Specimen
Bundle​.entry[9]​.resource​/*Observation​/complex-component-D*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l944​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Specimen
Bundle​.entry[10]​.resource​/*Observation​/complex-component-E*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l1082​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated Specimen
Bundle​.entry[10]​.resource​/*Observation​/complex-component-E*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l1101​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Specimen
Bundle​.entry[11]​.resource​/*Observation​/haplotype*​/​.value​.ofType(CodeableConcept)​.coding[0] (l1178​/c10)warningA definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated Organization
Bundle​.entry[12]​.resource​/*Observation​/genotype*​/​.value​.ofType(CodeableConcept)​.coding[0]​.system (l1244​/c10)warningA definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[12]​.resource​/*Observation​/genotype*​/​.value​.ofType(CodeableConcept)​.coding[1] (l1244​/c10)warningA definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[12]​.resource​/*Observation​/genotype*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l1277​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Haplotype
Bundle​.entry[12]​.resource​/*Observation​/genotype*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l1296​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Haplotype

fsh-generated/resources/Bundle-bundle-cgexample-withGrouping.json Show Validation Information (106)

PathSeverityMessageValidating
Bundle​.entry[5]​.resource​/*Observation​/discrete-variant-1a*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l242​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMPatient
Bundle​.entry[5]​.resource​/*Observation​/discrete-variant-1a*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l261​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Patient
Bundle​.entry[5]​.resource​/*Observation​/discrete-variant-1a*​/​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l280​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Patient
Bundle​.entry[5]​.resource​/*Observation​/discrete-variant-1a*​/​.component[3]​.value​.ofType(CodeableConcept)​.coding[0] (l298​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Patient
Bundle​.entry[5]​.resource​/*Observation​/discrete-variant-1a*​/​.component[5]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l334​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/projects/SNP' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMPatient
Bundle​.entry[6]​.resource​/*Observation​/dis-path-1a*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l654​/c14)warningA definition for CodeSystem 'http://purl.obolibrary.org/obo/mondo.owl' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMVariant
Bundle​.entry[9]​.resource​/*Observation​/complex-component-D-1a*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l901​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated Specimen
Bundle​.entry[9]​.resource​/*Observation​/complex-component-D-1a*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l920​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Specimen
Bundle​.entry[10]​.resource​/*Observation​/complex-component-E-1a*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l1058​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated Specimen
Bundle​.entry[10]​.resource​/*Observation​/complex-component-E-1a*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l1077​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Specimen
Bundle​.entry[12]​.resource​/*Observation​/haplotype-1a*​/​.value​.ofType(CodeableConcept)​.coding[0] (l1221​/c10)warningA definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated Organization
Bundle​.entry[13]​.resource​/*Observation​/genotype-1a*​/​.value​.ofType(CodeableConcept)​.coding[0]​.system (l1287​/c10)warningA definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[13]​.resource​/*Observation​/genotype-1a*​/​.value​.ofType(CodeableConcept)​.coding[1] (l1287​/c10)warningA definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[13]​.resource​/*Observation​/genotype-1a*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l1320​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Haplotype
Bundle​.entry[13]​.resource​/*Observation​/genotype-1a*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l1339​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Haplotype

fsh-generated/resources/Bundle-bundle-complexVariant-nonHGVS.json Show Validation Information (9)

PathSeverityMessageValidating
Bundle​.entry[0]​.resource​/*Observation​/Inline-Instance-for-complexVariant-nonHGVS-1*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l74​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Organization
Bundle​.entry[1]​.resource​/*Observation​/Inline-Instance-for-complexVariant-nonHGVS-2*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l221​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Organization
Bundle​.entry[2]​.resource​/*Observation​/Inline-Instance-for-complexVariant-nonHGVS-3*​/​.value​.ofType(CodeableConcept)​.coding[0] (l347​/c10)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated Organization

fsh-generated/resources/Bundle-bundle-compound-heterozygote.json Show Validation Information (9)

PathSeverityMessageValidating
Bundle​.entry[2]​.resource​/*Observation​/Inline-Instance-for-compound-heterozygote-3*​/​.value​.ofType(CodeableConcept)​.coding[0] (l263​/c10)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated Organization

fsh-generated/resources/Bundle-bundle-oncology-diagnostic.json Show Validation Information (28)

PathSeverityMessageValidating
Bundle​.entry[4]​.resource​/*Observation​/Inline-Instance-for-oncology-diagnostic-5*​/​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l304​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated Specimen
Bundle​.entry[4]​.resource​/*Observation​/Inline-Instance-for-oncology-diagnostic-5*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l344​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Specimen

fsh-generated/resources/Bundle-bundle-oncology-report-example.json Show Validation Information (126)

PathSeverityMessageValidating
Bundle​.entry[3]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-4*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l190​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[3]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-4*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l250​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[3]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-4*​/​.component[6]​.value​.ofType(CodeableConcept)​.coding[0] (l290​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Organization
Bundle​.entry[3]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-4*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l250​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[4]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-5*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l455​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[4]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-5*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l515​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[4]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-5*​/​.component[5]​.value​.ofType(CodeableConcept)​.coding[0] (l535​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Organization
Bundle​.entry[4]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-5*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l515​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[5]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-6*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l700​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[5]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-6*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l760​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[5]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-6*​/​.component[6]​.value​.ofType(CodeableConcept)​.coding[0] (l800​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Organization
Bundle​.entry[5]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-6*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l760​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[6]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-7*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l965​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[6]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-7*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l1025​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[6]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-7*​/​.component[5]​.value​.ofType(CodeableConcept)​.coding[0] (l1045​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Organization
Bundle​.entry[7]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-8*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l1210​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[7]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-8*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l1270​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[7]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-8*​/​.component[5]​.value​.ofType(CodeableConcept)​.coding[0] (l1290​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Organization
Bundle​.entry[7]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-8*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l1270​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[8]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-9*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l1455​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[8]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-9*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l1515​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[8]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-9*​/​.component[5]​.value​.ofType(CodeableConcept)​.coding[0] (l1535​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Organization
Bundle​.entry[8]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-9*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l1515​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[9]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-10*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l1700​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[9]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-10*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l1759​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[9]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-10*​/​.component[6]​.value​.ofType(CodeableConcept)​.coding[0] (l1798​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Organization
Bundle​.entry[10]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-11*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l1963​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[10]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-11*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l2022​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[10]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-11*​/​.component[6]​.value​.ofType(CodeableConcept)​.coding[0] (l2061​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Organization
Bundle​.entry[10]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-11*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l2022​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[11]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-12*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l2226​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[11]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-12*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l2285​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[11]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-12*​/​.component[6]​.value​.ofType(CodeableConcept)​.coding[0] (l2324​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Organization
Bundle​.entry[11]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-12*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l2285​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[12]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-13*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l2489​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[12]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-13*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l2548​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[12]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-13*​/​.component[5]​.value​.ofType(CodeableConcept)​.coding[0] (l2568​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Organization
Bundle​.entry[12]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-13*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l2548​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[13]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-14*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l2733​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[13]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-14*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l2792​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[13]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-14*​/​.component[5]​.value​.ofType(CodeableConcept)​.coding[0] (l2812​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Organization
Bundle​.entry[13]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-14*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l2792​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[14]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-15*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l2977​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[14]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-15*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l3036​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[14]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-15*​/​.component[6]​.value​.ofType(CodeableConcept)​.coding[0] (l3075​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Organization
Bundle​.entry[14]​.resource​/*Observation​/Inline-Instance-for-oncology-report-example-15*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l3036​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Organization

fsh-generated/resources/Bundle-bundle-oncologyexamples-r4.json Show Validation Information (99)

PathSeverityMessageValidating
Bundle​.entry[5]​.resource​/*Observation​/Inline-Instance-for-oncologyexamples-r4-6*​/​.component[3]​.value​.ofType(CodeableConcept)​.coding[0] (l418​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Specimen
Bundle​.entry[6]​.resource​/*Observation​/Inline-Instance-for-oncologyexamples-r4-7*​/​.component[3]​.value​.ofType(CodeableConcept)​.coding[0] (l574​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Specimen
Bundle​.entry[7]​.resource​/*Observation​/Inline-Instance-for-oncologyexamples-r4-8*​/​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l710​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Specimen

fsh-generated/resources/Bundle-bundle-oncologyexamples-r4-withGrouping.json Show Validation Information (115)

PathSeverityMessageValidating
Bundle​.entry[5]​.resource​/*Observation​/Inline-Instance-for-oncologyexamples-r4-withGrouping-6*​/​.component[3]​.value​.ofType(CodeableConcept)​.coding[0] (l418​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Specimen
Bundle​.entry[6]​.resource​/*Observation​/Inline-Instance-for-oncologyexamples-r4-withGrouping-7*​/​.component[3]​.value​.ofType(CodeableConcept)​.coding[0] (l574​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Specimen
Bundle​.entry[7]​.resource​/*Observation​/Inline-Instance-for-oncologyexamples-r4-withGrouping-8*​/​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l710​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Specimen

fsh-generated/resources/Bundle-bundle-pgxexample.json Show Validation Information (72)

PathSeverityMessageValidating
Bundle​.entry[6]​.resource​/*Observation​/genotype-pgx-example*​/​.value​.ofType(CodeableConcept)​.coding[0] (l307​/c10)warningA definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[6]​.resource​/*Observation​/genotype-pgx-example*​/​.value​.ofType(CodeableConcept)​.coding[1] (l307​/c10)warningA definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[6]​.resource​/*Observation​/genotype-pgx-example*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l344​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant
Bundle​.entry[7]​.resource​/*Observation​/haplotype-1-pgx-example*​/​.value​.ofType(CodeableConcept)​.coding[0] (l409​/c10)warningA definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[7]​.resource​/*Observation​/haplotype-1-pgx-example*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l437​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Specimen
Bundle​.entry[8]​.resource​/*Observation​/haplotype-2-pgx-example*​/​.value​.ofType(CodeableConcept)​.coding[0] (l502​/c10)warningA definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated Organization
Bundle​.entry[8]​.resource​/*Observation​/haplotype-2-pgx-example*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l530​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Specimen
Bundle​.entry[9]​.resource​/*Observation​/variant-1-pgx-example*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l618​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Specimen
Bundle​.entry[9]​.resource​/*Observation​/variant-1-pgx-example*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l637​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/projects/SNP' could not be found, so the code cannot be validated Specimen
Bundle​.entry[10]​.resource​/*Observation​/variant-2-pgx-example*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l766​/c14)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Specimen
Bundle​.entry[10]​.resource​/*Observation​/variant-2-pgx-example*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l786​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Specimen
Bundle​.entry[10]​.resource​/*Observation​/variant-2-pgx-example*​/​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l804​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/projects/SNP' could not be found, so the code cannot be validated Specimen

fsh-generated/resources/Bundle-bundle-prequel-prenatal-trisomy13.json Show Validation Information (83)

PathSeverityMessageValidating
Bundle​.entry[7]​.resource​/*Observation​/prequel-variant-chr13-trisomy*​/​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l428​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Specimen
Bundle​.entry[10]​.resource​/*Observation​/prequel-dx-implication-patau*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l871​/c14)warningA definition for CodeSystem 'http://purl.obolibrary.org/obo/mondo.owl' could not be found, so the code cannot be validated Variant
Bundle​.entry[10]​.resource​/*Observation​/prequel-dx-implication-patau*​/​.component[2]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l891​/c14)warningA definition for CodeSystem 'http://purl.obolibrary.org/obo/hp.owl' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMVariant
Bundle​.entry[10]​.resource​/*Observation​/prequel-dx-implication-patau*​/​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l891​/c14)warningA definition for CodeSystem 'http://purl.obolibrary.org/obo/hp.owl' could not be found, so the code cannot be validated Variant
Bundle​.entry[10]​.resource​/*Observation​/prequel-dx-implication-patau*​/​.component[2]​.value​.ofType(CodeableConcept) (l891​/c14)informationNone of the codings provided are in the value set 'Condition Inheritance Patterns' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/condition-inheritance-mode-vs|4.0.0-cibuild), and a coding is recommended to come from this value set (codes = http://purl.obolibrary.org/obo/hp.owl#HP:0001466) Terminology_TX_NoValid_3_CCVariant
Bundle​.entry[11]​.resource​/*Observation​/prequel-dx-implication-edwards-negative*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l999​/c14)warningA definition for CodeSystem 'http://purl.obolibrary.org/obo/mondo.owl' could not be found, so the code cannot be validated Variant
Bundle​.entry[12]​.resource​/*Observation​/prequel-dx-implication-down-negative*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l1108​/c14)warningA definition for CodeSystem 'http://purl.obolibrary.org/obo/mondo.owl' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Bundle-bundle-sequence-phase-relation-CYP2C19.json Show Validation Information (35)

PathSeverityMessageValidating
Bundle​.entry[0]​.resource​/*Observation​/dv-5c7e9e1ca8252*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l94​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization
Bundle​.entry[1]​.resource​/*Observation​/dv-5c7e9e1ca82e4*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l276​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMOrganization

fsh-generated/resources/ConceptMap-dna-change-type-map.json Show Validation Information (1)

PathSeverityMessageValidating
ConceptMap (l1/c5195)informationThe resource status 'draft' and the standards status 'trial-use' may not be consistent and should be reviewed VALIDATION_VAL_STATUS_INCONSISTENT_HINTConceptMap
ConceptMap​.group[0]​.element[0]​.target[0]​.code (l1​/c4361)warningThe code 'SO:0002073' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null' --
ConceptMap​.group[0]​.element[1]​.target[0]​.code (l1​/c4498)warningThe code 'SO:0000159' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null' --
ConceptMap​.group[0]​.element[2]​.target[0]​.code (l1​/c4624)warningThe code 'SO:1000035' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null' --
ConceptMap​.group[0]​.element[3]​.target[0]​.code (l1​/c4751)warningThe code 'SO:0000667' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null' --
ConceptMap​.group[0]​.element[4]​.target[0]​.code (l1​/c4885)warningThe code 'SO:1000032' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null' --
ConceptMap​.group[0]​.element[5]​.target[0]​.code (l1​/c5007)warningThe code 'SO:1000036' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null' --
ConceptMap​.group[0]​.element[6]​.target[0]​.code (l1​/c5135)warningThe code 'SO:1000002' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null' --

fsh-generated/resources/GenomicStudy-lungMass.json Show Validation Information (1)

PathSeverityMessageValidating
GenomicStudy​.analysis[0]​.changeType[0]​.coding[0] (l61​/c10)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Genomic Study Metadata
GenomicStudy​.analysis[0]​.changeType[1]​.coding[0] (l70​/c10)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Genomic Study Metadata
GenomicStudy​.analysis[0]​.changeType[2]​.coding[0] (l79​/c10)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Genomic Study Metadata
GenomicStudy​.analysis[1]​.changeType[0]​.coding[0] (l178​/c10)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Genomic Study Metadata

fsh-generated/resources/GenomicStudy-somaticStudy.json Show Validation Information (1)

PathSeverityMessageValidating
GenomicStudy​.analysis[0]​.changeType[0]​.coding[0] (l65​/c10)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Genomic Study Metadata
GenomicStudy​.analysis[0]​.changeType[1]​.coding[0] (l74​/c10)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Genomic Study Metadata
GenomicStudy​.analysis[0]​.changeType[2]​.coding[0] (l83​/c10)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Genomic Study Metadata
GenomicStudy​.analysis[0]​.changeType[3]​.coding[0] (l92​/c10)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Genomic Study Metadata
GenomicStudy​.analysis[1]​.changeType[0]​.coding[0] (l165​/c10)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Genomic Study Metadata
GenomicStudy​.analysis[1]​.changeType[1]​.coding[0] (l174​/c10)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Genomic Study Metadata

fsh-generated/resources/ImplementationGuide-genomics-reporting.json Show Validation Information (1)

PathSeverityMessageValidating
ImplementationGuide​.dependsOn[0] (l1​/c2113)warningThe ImplementationGuide is based on FHIR version 6.0.0-ballot3 but package hl7.terminology.r5#7.1.0 is based on FHIR version 5.0.0. In general, this version mismatch should be avoided - some tools will try to make this work with variable degrees of success, but others will not even try IG_DEPENDENCY_VERSION_WARNING--
ImplementationGuide​.dependsOn[1] (l1​/c2475)errorThe canonical URL http://hl7.org/fhir/extensions/ImplementationGuide/hl7.fhir.uv.extensions points to the package hl7.fhir.uv.extensions which is inconsistent with the stated packageId of hl7.fhir.uv.extensions.r5 IG_DEPENDENCY_CLASH_PACKAGEID--

fsh-generated/resources/Observation-ATR-insertion-molc.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l81​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Observation​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l100​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Observation​.component[3]​.value​.ofType(CodeableConcept)​.coding[0] (l119​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-ATR-insertion-var.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Observation​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l79​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Observation​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l116​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant
Observation​.component[8]​.value​.ofType(CodeableConcept)​.coding[0] (l183​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-EGFR-L858R-molc.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l80​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-EGFR-L858R-var.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l76​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Observation​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l113​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-ExampleGermlineCNV.json Show Validation Information (1)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Observation​.component[3]​.value​.ofType(CodeableConcept)​.coding[0] (l94​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-ExampleGermlineDEL.json Show Validation Information (1)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Observation​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l113​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-ExampleGermlineINV.json Show Validation Information (1)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Observation​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l113​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-ExampleSomaticCNV.json Show Validation Information (1)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Observation​.component[3]​.value​.ofType(CodeableConcept)​.coding[0] (l94​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-ExampleSomaticDEL.json Show Validation Information (1)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Observation​.component[3]​.value​.ofType(CodeableConcept)​.coding[0] (l94​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-ExampleSomaticINV.json Show Validation Information (1)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Observation​.component[3]​.value​.ofType(CodeableConcept)​.coding[0] (l94​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-Genotype-Clinical-Trial-Example-using-haplotypes.json Show Validation Information (5)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Haplotype

fsh-generated/resources/Observation-GenotypeExample1.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.value​.ofType(CodeableConcept)​.coding[0] (l44​/c4)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated Genotype
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l64​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Genotype

fsh-generated/resources/Observation-GenotypeExamplePharmVar.json Show Validation Information (1)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Haplotype

fsh-generated/resources/Observation-HER2byImmuneStainExample.json Show Validation Information (1)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l38​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Molecular Biomarker

fsh-generated/resources/Observation-HER2byImmunoassayExample.json Show Validation Information (1)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l38​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Molecular Biomarker

fsh-generated/resources/Observation-HLA-A-haplotype1.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.value​.ofType(CodeableConcept)​.coding[0] (l68​/c4)warningA definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated Haplotype
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l46​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Haplotype
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l46​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMHaplotype

fsh-generated/resources/Observation-HLA-A-haplotype2.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.value​.ofType(CodeableConcept)​.coding[0] (l68​/c4)warningA definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated Haplotype
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l46​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Haplotype
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l46​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMHaplotype

fsh-generated/resources/Observation-HLA-B-haplotype1.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.value​.ofType(CodeableConcept)​.coding[0] (l68​/c4)warningA definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated Haplotype
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l46​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Haplotype

fsh-generated/resources/Observation-HLA-B-haplotype2.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.value​.ofType(CodeableConcept)​.coding[0] (l68​/c4)warningA definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated Haplotype
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l46​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Haplotype

fsh-generated/resources/Observation-HLA-C-haplotype1.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.value​.ofType(CodeableConcept)​.coding[0] (l68​/c4)warningA definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated Haplotype
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l46​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Haplotype

fsh-generated/resources/Observation-HLA-C-haplotype2.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.value​.ofType(CodeableConcept)​.coding[0] (l68​/c4)warningA definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated Haplotype
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l46​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Haplotype

fsh-generated/resources/Observation-HaplotypeExamplePharmVar01.json Show Validation Information (3)

PathSeverityMessageValidating
Observation​.value​.ofType(CodeableConcept)​.coding[0] (l65​/c4)warningA definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated Haplotype
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Haplotype

fsh-generated/resources/Observation-HaplotypeExamplePharmVar02.json Show Validation Information (3)

PathSeverityMessageValidating
Observation​.value​.ofType(CodeableConcept)​.coding[0] (l65​/c4)warningA definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated Haplotype
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Haplotype

fsh-generated/resources/Observation-HaplotypeSet-Clinical-Trial-Example-1of2.json Show Validation Information (4)

PathSeverityMessageValidating
Observation​.value​.ofType(CodeableConcept)​.coding[0] (l65​/c4)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated Haplotype
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Haplotype

fsh-generated/resources/Observation-HaplotypeSet-Clinical-Trial-Example-2of2.json Show Validation Information (4)

PathSeverityMessageValidating
Observation​.value​.ofType(CodeableConcept)​.coding[0] (l65​/c4)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated Haplotype
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Haplotype

fsh-generated/resources/Observation-ISCN-CMLExample.json Show Validation Information (5)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l65​/c8)warningA definition for CodeSystem 'https://iscn.karger.com' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMVariant

fsh-generated/resources/Observation-ISCN-NormalExample.json Show Validation Information (1)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l65​/c8)warningA definition for CodeSystem 'https://iscn.karger.com' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-MSH2-del-molc.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l80​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-MSH2-del-var.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l63​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Observation​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l82​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant
Observation​.component[3]​.value​.ofType(CodeableConcept)​.coding[0] (l101​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-MultipleRepeatExpansions.json Show Validation Information (1)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l47​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant
Observation​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l81​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-NOTCH1-uncertain-molc.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l81​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Observation​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l100​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-NOTCH1-uncertain-var.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l63​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Observation​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l115​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant
Observation​.component[8]​.value​.ofType(CodeableConcept)​.coding[0] (l182​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-NTHL1-snv-molc.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l80​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-NTHL1-snv-var.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l63​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Observation​.component[3]​.value​.ofType(CodeableConcept)​.coding[0] (l100​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant
Observation​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l119​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-PDL1Example.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l83​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Molecular Biomarker

fsh-generated/resources/Observation-Pgx-geno-1001.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.value​.ofType(CodeableConcept)​.coding[0] (l56​/c4)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated Variant
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-Pgx-geno-1002.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-Pgx-geno-1003.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-Pgx-var-1011.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Observation​.component[7]​.value​.ofType(CodeableConcept)​.coding[0] (l161​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant
Observation​.component[8]​.value​.ofType(CodeableConcept)​.coding[0] (l180​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-Pgx-var-1012.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Observation​.component[7]​.value​.ofType(CodeableConcept)​.coding[0] (l161​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant
Observation​.component[8]​.value​.ofType(CodeableConcept)​.coding[0] (l180​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-Pgx-var-1013.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Observation​.component[7]​.value​.ofType(CodeableConcept)​.coding[0] (l161​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant
Observation​.component[8]​.value​.ofType(CodeableConcept)​.coding[0] (l180​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-Pgx-var-1014.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Observation​.component[7]​.value​.ofType(CodeableConcept)​.coding[0] (l161​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant
Observation​.component[8]​.value​.ofType(CodeableConcept)​.coding[0] (l180​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-Pgx-var-1015.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[3]​.value​.ofType(CodeableConcept)​.coding[0] (l101​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant
Observation​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l120​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Observation​.component[4]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l120​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMVariant

fsh-generated/resources/Observation-Pgx-var-1016.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Observation​.component[7]​.value​.ofType(CodeableConcept)​.coding[0] (l161​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant
Observation​.component[8]​.value​.ofType(CodeableConcept)​.coding[0] (l180​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Observation​.component[8]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l180​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMVariant

fsh-generated/resources/Observation-Pgx-var-1017.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Observation​.component[7]​.value​.ofType(CodeableConcept)​.coding[0] (l161​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant
Observation​.component[8]​.value​.ofType(CodeableConcept)​.coding[0] (l180​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Observation​.component[8]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l180​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMVariant

fsh-generated/resources/Observation-Pgx-var-1018.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Observation​.component[7]​.value​.ofType(CodeableConcept)​.coding[0] (l161​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant
Observation​.component[8]​.value​.ofType(CodeableConcept)​.coding[0] (l180​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Observation​.component[8]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l180​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMVariant

fsh-generated/resources/Observation-Pgx-var-1019.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[3]​.value​.ofType(CodeableConcept)​.coding[0] (l101​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant
Observation​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l120​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Observation​.component[4]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l120​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMVariant

fsh-generated/resources/Observation-Pgx-var-1020.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Observation​.component[7]​.value​.ofType(CodeableConcept)​.coding[0] (l161​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant
Observation​.component[8]​.value​.ofType(CodeableConcept)​.coding[0] (l180​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Observation​.component[8]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l180​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMVariant

fsh-generated/resources/Observation-Pgx-var-1021.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Observation​.component[7]​.value​.ofType(CodeableConcept)​.coding[0] (l161​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant
Observation​.component[8]​.value​.ofType(CodeableConcept)​.coding[0] (l180​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Observation​.component[8]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l180​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMVariant

fsh-generated/resources/Observation-ROS1-Fusion.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l60​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-ROS1-Fusion-therapuTrial.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[2]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l80​/c8)warningA definition for CodeSystem 'http://clinicaltrials.gov' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMVariant

fsh-generated/resources/Observation-ROS1-Fusion-var.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l58​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-RepeatExpansion.json Show Validation Information (1)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l47​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant
Observation​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l81​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Observation​.component[5]​.value​.ofType(CodeableConcept)​.coding[0] (l137​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-SNVexample.json Show Validation Information (5)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l81​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant
Observation​.component[6]​.value​.ofType(CodeableConcept)​.coding[0] (l194​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-STAG2-insertion-molc.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l81​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Observation​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l100​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-STAG2-insertion-var.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l63​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Observation​.component[3]​.value​.ofType(CodeableConcept)​.coding[0] (l97​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Observation​.component[5]​.value​.ofType(CodeableConcept)​.coding[0] (l134​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant
Observation​.component[9]​.value​.ofType(CodeableConcept)​.coding[0] (l201​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-Therapeutic-Implication-Clinical-Trial-2.json Show Validation Information (1)

PathSeverityMessageValidating
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l78​/c8)warningA definition for CodeSystem 'http://clinicaltrials.gov' could not be found, so the code cannot be validated Genotype

fsh-generated/resources/Observation-Therapeutic-Implication-Clinical-Trial-Somatic.json Show Validation Information (1)

PathSeverityMessageValidating
Observation​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l94​/c8)warningA definition for CodeSystem 'http://clinicaltrials.gov' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-Variant-Somatic-Clinical-Trial.json Show Validation Information (5)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-VariantExample.json Show Validation Information (5)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l65​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-VariantExample2.json Show Validation Information (5)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l74​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMVariant

fsh-generated/resources/Observation-ZFHX3-uncertain-molc.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l81​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Observation​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l100​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-ZFHX3-uncertain-var.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l63​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Observation​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l115​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant
Observation​.component[8]​.value​.ofType(CodeableConcept)​.coding[0] (l182​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-genotype-hla-a-glstring-r4.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.value​.ofType(CodeableConcept)​.coding[0] (l52​/c4)warningA definition for CodeSystem 'http://glstring.org' could not be found, so the code cannot be validated Haplotype
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l82​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Haplotype
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l82​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMHaplotype

fsh-generated/resources/Observation-haplotype-hla-a-1-r4.json Show Validation Information (9)

PathSeverityMessageValidating
Observation​.value​.ofType(CodeableConcept)​.coding[0] (l52​/c4)warningA definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated Haplotype
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l75​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Haplotype

fsh-generated/resources/Observation-molec-conseq1.json Show Validation Information (1)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l72​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l91​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[1] (l91​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Observation​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l115​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-molec-conseq2.json Show Validation Information (1)

PathSeverityMessageValidating
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l92​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Observation​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l111​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-molec-conseq3.json Show Validation Information (1)

PathSeverityMessageValidating
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l92​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Observation​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l111​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-molec-conseq4.json Show Validation Information (1)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l72​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l91​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-obs-idh-ex.json Show Validation Information (1)

PathSeverityMessageValidating
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l77​/c8)warningA definition for CodeSystem 'http://purl.obolibrary.org/obo/mondo.owl' could not be found, so the code cannot be validated Variant
Observation​.component[2]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l97​/c8)warningA definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMVariant
Observation​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l97​/c8)warningA definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-obs1-interact-smn1-smn2.json Show Validation Information (5)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l64​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Observation​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l117​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-obs2-interact-smn1-smn2.json Show Validation Information (5)

PathSeverityMessageValidating
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l45​/c8)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Variant
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l64​/c8)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Observation​.component[4]​.value​.ofType(CodeableConcept)​.coding[0] (l117​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Observation-variant-with-molec-consequences.json Show Validation Information (5)

PathSeverityMessageValidating
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l86​/c8)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant

fsh-generated/resources/Parameters-FindStudyMetadataOutput.json Show Validation Information (1)

PathSeverityMessageValidating
Parameters​.parameter[0]​.part[4]​.value​.ofType(CodeableConcept)​.coding[0] (l34​/c12)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Parameters
Parameters​.parameter[0]​.part[4]​.value​.ofType(CodeableConcept)​.coding[1] (l34​/c12)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Parameters
Parameters​.parameter[0]​.part[4]​.value​.ofType(CodeableConcept)​.coding[2] (l34​/c12)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Parameters
Parameters​.parameter[0]​.part[4]​.value​.ofType(CodeableConcept)​.coding[3] (l34​/c12)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Parameters

fsh-generated/resources/Parameters-FindSubjectDxImplicationsOutput.json Show Validation Information (5)

PathSeverityMessageValidating
Parameters​.parameter[1]​.resource​/*Observation​/variantExample2*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l195​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Observation

fsh-generated/resources/Parameters-FindSubjectHaplotypesOutput.json Show Validation Information (5)

PathSeverityMessageValidating
Parameters​.parameter[0]​.part[1]​.resource​/*Observation​/GenotypeCYP2D6*​/​.value​.ofType(CodeableConcept)​.coding[0] (l63​/c14)warningA definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated Observation
Parameters​.parameter[0]​.part[1]​.resource​/*Observation​/GenotypeCYP2D6*​/​.value​.ofType(CodeableConcept)​.coding[1] (l63​/c14)warningA definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated Observation
Parameters​.parameter[0]​.part[1]​.resource​/*Observation​/GenotypeCYP2D6*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l92​/c18)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Observation
Parameters​.parameter[1]​.part[1]​.resource​/*Observation​/GenotypeCYP2C19*​/​.value​.ofType(CodeableConcept)​.coding[0] (l165​/c14)warningA definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated Observation
Parameters​.parameter[1]​.part[1]​.resource​/*Observation​/GenotypeCYP2C19*​/​.value​.ofType(CodeableConcept)​.coding[1] (l165​/c14)warningA definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated Observation
Parameters​.parameter[1]​.part[1]​.resource​/*Observation​/GenotypeCYP2C19*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l194​/c18)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Observation

fsh-generated/resources/Parameters-FindSubjectMolecConseqOutput.json Show Validation Information (11)

PathSeverityMessageValidating
Parameters​.parameter[0]​.resource​/*Observation​/MC1*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l82​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Parameters​.parameter[0]​.resource​/*Observation​/MC1*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l101​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Parameters​.parameter[0]​.resource​/*Observation​/MC1*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[1] (l101​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Parameters​.parameter[0]​.resource​/*Observation​/MC1*​/​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l125​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Parameters​.parameter[1]​.resource​/*Observation​/MC2*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l235​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Parameters​.parameter[1]​.resource​/*Observation​/MC2*​/​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l254​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Parameters​.parameter[2]​.resource​/*Observation​/MC3*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l364​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Parameters​.parameter[2]​.resource​/*Observation​/MC3*​/​.component[2]​.value​.ofType(CodeableConcept)​.coding[0] (l383​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Parameters​.parameter[3]​.resource​/*Observation​/MC4*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l473​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Variant
Parameters​.parameter[3]​.resource​/*Observation​/MC4*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l492​/c14)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Variant
Parameters​.parameter[0]​.resource​/*Observation​/MC1*​/​.derivedFrom[0]​.parameter[0]​.resource​/*Observation​/variantExampleMC*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l596​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Observation

fsh-generated/resources/Parameters-FindSubjectSpecificHaplotypesOutput.json Show Validation Information (3)

PathSeverityMessageValidating
Parameters​.parameter[0]​.part[2]​.resource​/*Observation​/Genotype7*​/​.value​.ofType(CodeableConcept)​.coding[0] (l67​/c14)warningA definition for CodeSystem 'http://glstring.org' could not be found, so the code cannot be validated Observation
Parameters​.parameter[0]​.part[2]​.resource​/*Observation​/Genotype7*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0]​.system (l90​/c18)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEMObservation
Parameters​.parameter[0]​.part[2]​.resource​/*Observation​/Genotype7*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l90​/c18)warningA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated Genotype

fsh-generated/resources/Parameters-FindSubjectSpecificVariantsOutput.json Show Validation Information (3)

PathSeverityMessageValidating
Parameters​.parameter[4]​.part[2]​.resource​/*Observation​/dv-5a7f781e83514*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l159​/c18)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Observation

fsh-generated/resources/Parameters-FindSubjectStructuralIntersectingVariantsOutput.json Show Validation Information (3)

PathSeverityMessageValidating
Parameters​.parameter[0]​.part[2]​.resource​/*Observation​/dv-fff9d40035a04*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l87​/c18)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Observation
Parameters​.parameter[0]​.part[2]​.resource​/*Observation​/dv-fff9d40035a04*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l107​/c18)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Observation

fsh-generated/resources/Parameters-FindSubjectStructuralSubsumingVariantsOutput.json Show Validation Information (3)

PathSeverityMessageValidating
Parameters​.parameter[0]​.part[2]​.resource​/*Observation​/dv-64c82675925d4*​/​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l87​/c18)warningA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated Observation
Parameters​.parameter[0]​.part[2]​.resource​/*Observation​/dv-64c82675925d4*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l107​/c18)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Observation

fsh-generated/resources/Parameters-FindSubjectTxImplicationsOutput.json Show Validation Information (5)

PathSeverityMessageValidating
Parameters​.parameter[1]​.resource​/*Observation​/variantExample*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l194​/c14)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Observation

fsh-generated/resources/Parameters-FindSubjectVariantsOutput.json Show Validation Information (3)

PathSeverityMessageValidating
Parameters​.parameter[1]​.part[2]​.resource​/*Observation​/dv-5a7f781e83514*​/​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l120​/c18)warningA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated Observation

fsh-generated/resources/StructureDefinition-genomic-data-file.json Show Validation Information (1)

PathSeverityMessageValidating
StructureDefinition​.snapshot​.element[52] (l1​/c89980)warningConstraint failed: eld-33: 'If there's more than one bindable type, it's usually an error for there to be a binding (type.where(code in 'code' | 'Coding' | 'CodeableConcept' | 'CodeableReference' | 'uri' | 'string' | 'Quantity').count() > 1 implies binding.empty())' (defined in http://hl7.org/fhir/StructureDefinition/ElementDefinition) http://hl7.org/fhir/StructureDefinition/ElementDefinition#eld-33StructureDefinition

fsh-generated/resources/ValueSet-condition-inheritance-mode-vs.json Show Validation Information (1)

PathSeverityMessageValidating
ValueSet.compose.include[0] (l1/c4414)informationThe concepts in the value set include have not been validated because the code system 'http://human-phenotype-ontology.org' is not known, and no terminology service supports it VALUESET_INC_CS_NO_SUPPORT--
ValueSet​.where(id = 'condition-inheritance-mode-vs')warningError from https://tx.fhir.org/r5: Error: A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the value set cannot be expanded (from server, see log) --

fsh-generated/resources/ValueSet-dna-change-type-vs.json Show Validation Information (1)

PathSeverityMessageValidating
ValueSet​.where(id = 'dna-change-type-vs')warningError from https://tx.fhir.org/r5: Error: A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the value set cannot be expanded (from server, see log) --

fsh-generated/resources/ValueSet-functional-effect-vs.json Show Validation Information (1)

PathSeverityMessageValidating
ValueSet​.where(id = 'functional-effect-vs')warningError from https://tx.fhir.org/r5: Error: A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the value set cannot be expanded (from server, see log) --

fsh-generated/resources/ValueSet-hgnc-vs.json Show Validation Information (1)

PathSeverityMessageValidating
ValueSet.where(id = 'hgnc-vs')warningError from https://tx.fhir.org/r5: Error: A definition for CodeSystem 'http://www.genenames.org' could not be found, so the value set cannot be expanded (from server, see log) --

fsh-generated/resources/ValueSet-molecular-consequence-vs.json Show Validation Information (1)

PathSeverityMessageValidating
ValueSet​.where(id = 'molecular-consequence-vs')warningError from https://tx.fhir.org/r5: Error: A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the value set cannot be expanded (from server, see log) --

Suppressed Messages (Warnings, hints, broken links)

An example of DiagnosticImplication<Observation>.derivedFrom() that we slice to only allow our profiles. In this example, we did not define specific Variant instances and just refer to some variants by identifier (rather than a full resource), so ignoring these warnings

CG has reviewed these CodeSystems and have decided to keep this in our IG

GenomicReport<DiagnosticReport>.result referencing Observation instances. We have defined our report profile to slice .result with our Observation profiles. Slicing is open, this informational message can be ignored

Observation.component instances that do not match our slices, but is OK (and this is ok since we use open slicing)

Our Observation profiles require a code from the Observation Category value set (LAB), but in some cases require additional codes from other value sets. Since this binding is "Preferred" the resources are still conformant, so we are Suppressing these messages.

Suppress all references to example CodeSystems

THESE SHOULD BE REVIEWED BEFORE PUBLICATION - ADDING THESE OCT 2025 JUST TO KEEP THE QA A LITTLE CLEANER FOR NOW

The IG Validator returns different warnings on this error: https://github.com/HL7/fhir-ig-publisher/issues/420 - in short, the validator returns the "among choices" profiles in a different order different times, so suppressing by wildcard

The mappings in this concept map have been human reviewed and is correct

These URLs have been validated and are apporpriately used in our examples

These slice messages have been reviewed, and our StructureDefinition apporpriately defines the slices of extension, and examples look valid. Have asked for feedback here: https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/slicing.20in.20Observation.2Ecomponent.2Eextension.20information.20help.3F

These slice messages that have been reviewed. Each of these refer to (via derivedFrom) a Variant, and are a valid Variant instance. They are similar to ones mentioned on https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/slicing.20in.20Observation.2Ecomponent.2Eextension.20information.20help.3F

We define several experimental CodeSystems that we use, so OK to suppress this for all IG defined CSs, https://chat.fhir.org/#narrow/channel/179202-terminology/topic/Overuse.20of.20the.20Experimental.20flag, https://confluence.hl7.org/x/LKOZCQ

Errors sorted by type

IG_DEPENDENCY_CLASH_PACKAGEID

fsh-generated/resources/ImplementationGuide-genomics-reporting.jsonThe canonical URL http://hl7.org/fhir/extensions/ImplementationGuide/hl7.fhir.uv.extensions points to the package hl7.fhir.uv.extensions which is inconsistent with the stated packageId of hl7.fhir.uv.extensions.r5--

IG_DEPENDENCY_VERSION_WARNING

fsh-generated/resources/ImplementationGuide-genomics-reporting.jsonThe ImplementationGuide is based on FHIR version 6.0.0-ballot3 but package hl7.terminology.r5#7.1.0 is based on FHIR version 5.0.0. In general, this version mismatch should be avoided - some tools will try to make this work with variable degrees of success, but others will not even try--

MSG_DEPENDS_ON_DEPRECATED_NOTE

fsh-generated/resources/StructureDefinition-genomic-report.jsonThe extension http://hl7.org/fhir/StructureDefinition/hla-genotyping-results-allele-database|5.2.0 is deprecated with the note: 'This extension has been replaced by the profiles and extensions defined in the "Genomics Reporting Guide" (https://hl7.org/fhir/uv/genomics-reporting/)'--
fsh-generated/resources/StructureDefinition-genomic-report.jsonThe extension http://hl7.org/fhir/StructureDefinition/hla-genotyping-results-glstring|5.2.0 is deprecated with the note: 'This extension has been replaced by the profiles and extensions defined in the "Genomics Reporting Guide" (https://hl7.org/fhir/uv/genomics-reporting/)'--

Terminology_TX_NoValid_3_CC

fsh-generated/resources/Bundle-bundle-prequel-prenatal-trisomy13.jsonNone of the codings provided are in the value set 'Condition Inheritance Patterns' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/condition-inheritance-mode-vs|4.0.0-cibuild), and a coding is recommended to come from this value set (codes = http://purl.obolibrary.org/obo/hp.owl#HP:0001466)Variant

UNKNOWN_CODESYSTEM

fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.jsonA definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.jsonA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validatedSpecimen
fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.jsonA definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.jsonA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validatedSpecimen
fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.jsonA definition for CodeSystem 'http://glstring.org' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.jsonA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validatedHaplotype
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-cgexample.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validatedPatient
fsh-generated/resources/Bundle-bundle-cgexample.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/projects/SNP' could not be found, so the code cannot be validatedPatient
fsh-generated/resources/Bundle-bundle-cgexample.jsonA definition for CodeSystem 'http://purl.obolibrary.org/obo/mondo.owl' could not be found, so the code cannot be validatedVariant
fsh-generated/resources/Bundle-bundle-cgexample.jsonA definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-cgexample-withGrouping.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validatedPatient
fsh-generated/resources/Bundle-bundle-cgexample-withGrouping.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/projects/SNP' could not be found, so the code cannot be validatedPatient
fsh-generated/resources/Bundle-bundle-cgexample-withGrouping.jsonA definition for CodeSystem 'http://purl.obolibrary.org/obo/mondo.owl' could not be found, so the code cannot be validatedVariant
fsh-generated/resources/Bundle-bundle-cgexample-withGrouping.jsonA definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-oncology-report-example.jsonA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-oncology-report-example.jsonA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-oncology-report-example.jsonA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-oncology-report-example.jsonA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-oncology-report-example.jsonA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-oncology-report-example.jsonA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-oncology-report-example.jsonA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-oncology-report-example.jsonA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-oncology-report-example.jsonA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-oncology-report-example.jsonA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-prequel-prenatal-trisomy13.jsonA definition for CodeSystem 'http://purl.obolibrary.org/obo/hp.owl' could not be found, so the code cannot be validatedVariant
fsh-generated/resources/Bundle-bundle-sequence-phase-relation-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Bundle-bundle-sequence-phase-relation-CYP2C19.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedOrganization
fsh-generated/resources/Observation-HLA-A-haplotype1.jsonA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validatedHaplotype
fsh-generated/resources/Observation-HLA-A-haplotype2.jsonA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validatedHaplotype
fsh-generated/resources/Observation-ISCN-CMLExample.jsonA definition for CodeSystem 'https://iscn.karger.com' could not be found, so the code cannot be validatedVariant
fsh-generated/resources/Observation-Pgx-var-1015.jsonA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validatedVariant
fsh-generated/resources/Observation-Pgx-var-1016.jsonA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validatedVariant
fsh-generated/resources/Observation-Pgx-var-1017.jsonA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validatedVariant
fsh-generated/resources/Observation-Pgx-var-1018.jsonA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validatedVariant
fsh-generated/resources/Observation-Pgx-var-1019.jsonA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validatedVariant
fsh-generated/resources/Observation-Pgx-var-1020.jsonA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validatedVariant
fsh-generated/resources/Observation-Pgx-var-1021.jsonA definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validatedVariant
fsh-generated/resources/Observation-ROS1-Fusion-therapuTrial.jsonA definition for CodeSystem 'http://clinicaltrials.gov' could not be found, so the code cannot be validatedVariant
fsh-generated/resources/Observation-VariantExample2.jsonA definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validatedVariant
fsh-generated/resources/Observation-genotype-hla-a-glstring-r4.jsonA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validatedHaplotype
fsh-generated/resources/Observation-obs-idh-ex.jsonA definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validatedVariant
fsh-generated/resources/Parameters-FindSubjectSpecificHaplotypesOutput.jsonA definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validatedObservation

VALIDATION_VAL_STATUS_INCONSISTENT_HINT

fsh-generated/resources/ConceptMap-dna-change-type-map.jsonThe resource status 'draft' and the standards status 'trial-use' may not be consistent and should be reviewedConceptMap

VALUESET_INC_CS_NO_SUPPORT

fsh-generated/resources/ValueSet-condition-inheritance-mode-vs.jsonThe concepts in the value set include have not been validated because the code system 'http://human-phenotype-ontology.org' is not known, and no terminology service supports it--