Validation Results for GenomicsReporting

Generated Tue Mar 31 20:39:48 UTC 2026, FHIR version 6.0.0-ballot3 for hl7.fhir.uv.genomics-reporting#4.0.0-cibuild (canonical = http://hl7.org/fhir/uv/genomics-reporting (history)). See Errors Only & IP

Quality Checks

Publisher Version:

IG Publisher Version: v2.2.4

Publication Code:

genomics-reporting . PackageId = hl7.fhir.uv.genomics-reporting, Canonical = http://hl7.org/fhir/uv/genomics-reporting

Realm Check for UV:

Language Info:

This IG has no language information

Publication Request:

package-id

hl7.fhir.uv.genomics-reporting

version

4.0.0-cibuild

path

http://hl7.org/fhir/uv/genomics-reporting/STU4-snapshot

Pub-Mode

working release

status

ballot

Release-Label

CI Build

Sequence (Group)

STU4 (current: 'STU3', others = 'STU 1','STU 2','STU 3')

desc

CI Build - STU 4.0.0 Development (FHIR R6)

descmd

CI Build - STU 4.0.0 Development (FHIR R6).

RelatedIgs

(None Found)

No Messages found - all good

Supressed Messages:

55 Suppressed Issues

Dependency Checks:

Package	Version	FHIR	Canonical	Web Base	Comment
hl7.fhir.uv.genomics-reporting	4.0.0-cibuild	R6	http://hl7.org/fhir/uv/genomics-reporting
hl7.terminology.r5	7.1.0 M	R5	http://terminology.hl7.org	http://terminology.hl7.org/7.1.0	FHIR Version Mismatch
hl7.fhir.uv.extensions.r5	5.2.0 M	R5	http://hl7.org/fhir/extensions	http://hl7.org/fhir/extensions/5.2.0	FHIR Version Mismatch
hl7.fhir.uv.extensions.r5	5.2.0 M	R5	http://hl7.org/fhir/extensions	http://hl7.org/fhir/extensions/5.2.0	FHIR Version Mismatch (as above)
hl7.fhir.uv.tools.r5	1.1.2 M	R5	http://hl7.org/fhir/tools	http://hl7.org/fhir/tools/1.1.2	Internal Dependency. FHIR Version Mismatch

Templates: hl7.fhir.template#1.0.0 -> hl7.base.template#1.0.0 -> fhir.base.template#1.0.0

Related IGs:

n/a

Dependent IGs:

no references

Global Profiles:

(none declared)

Terminology Server(s):

https://tx.fhir.org/r5 (details)

HTA Analysis:

All OK

R5 Dependencies:

(none)

Draft Dependencies:

hl7.fhir.r6.core#6.0.0-ballot3: GenomicStudyDataFormat (7 uses), GenomicStudyMethodType (5 uses), Practitioner (43 uses), PractitionerRole (30 uses), RelatedPerson (25 uses), Organization (44 uses), ObservationDefinition (24 uses), CarePlan (16 uses), DeviceRequest (13 uses), ImmunizationRecommendation (14 uses), MedicationRequest (14 uses), NutritionOrder (14 uses), ServiceRequest (15 uses), GenomicStudy (29 uses), ObservationCategoryCodes (37 uses), LOINCCodes (115 uses), Group (30 uses), Device (35 uses), Location (15 uses), Procedure (16 uses), Medication (15 uses), Substance (14 uses), BiologicallyDerivedProduct (14 uses), NutritionProduct (13 uses), Encounter (17 uses), CareTeam (21 uses), HealthcareService (15 uses), MolecularSequence (49 uses), SNOMEDCTBodyStructures (13 uses), BodyStructure (13 uses), ObservationMethods (9 uses), Specimen (14 uses), DeviceMetric (12 uses), ObservationReferenceRangeNormalValueCodes (12 uses), ObservationReferenceRangeMeaningCodes (12 uses), ObservationReferenceRangeAppliesToCodes (12 uses), QuestionnaireResponse (24 uses), DocumentReference (17 uses), ImagingStudy (15 uses), ImagingSelection (12 uses), Task (10 uses), ActivityDefinition (3 uses), TaskStatus (2 uses), TaskStatusReason (2 uses), TaskBusinessStatus (2 uses), TaskIntent (2 uses), RequestPriority (2 uses), ProcedurePerformerRoleCodes (2 uses), TaskPerformerFunctionCode (2 uses), TaskReason (2 uses), Coverage (2 uses), ClaimResponse (2 uses), Provenance (2 uses), TaskInputOutputParameterType (4 uses), Appointment (2 uses), AppointmentResponse (1 uses), Claim (1 uses), CommunicationRequest (1 uses), Contract (1 uses), CoverageEligibilityRequest (1 uses), EnrollmentRequest (1 uses), RequestOrchestration (1 uses), SupplyRequest (1 uses), VisionPrescription (1 uses), DocumentReferenceStatus (1 uses), CompositionStatus (1 uses), FHIRDocumentTypeCodes (1 uses), EpisodeOfCare (1 uses), CompositionAttestationMode (1 uses), SecurityLabelExamples (1 uses), DiagnosticReport (3 uses), DiagnosticReportStatus (1 uses), DiagnosticServiceSectionCodes (2 uses), LOINCDiagnosticReportCodes (1 uses), Citation (1 uses), FamilyMemberHistory (1 uses), AllergyIntolerance (1 uses), DeviceUsage (1 uses), Condition (3 uses), Composition (1 uses), SNOMEDCTClinicalFindings (1 uses), Communication (1 uses), RiskAssessment (2 uses), GenomicStudyStatus (1 uses), GenomicStudyType (1 uses), PlanDefinition (4 uses), GenomicStudyMethodType (1 uses), GenomicStudyChangeType (1 uses), GenomicStudyDataFormat (2 uses), MedicationKnowledge (2 uses), MedicationStatement (3 uses), MedicationAdministration (1 uses), MedicationDispense (1 uses), Immunization (1 uses), ResearchStudy (2 uses)
hl7.fhir.uv.extensions.r5#5.2.0: SDStatusDerivation (124 uses), SDTypeCharacteristics (9 uses)

Modifier Extensions:

(none)

Previous Version Comparison:

Comparison with version 3.0.0

IPA Comparison:

n/a

IPS Comparison:

n/a

Validation Flags:

On: autoLoad; Off: hintAboutNonMustSupport, anyExtensionsAllowed, checkAggregation, showReferenceMessages, noExperimentalContent, displayWarnings

Summary:

errors = 4, warn = 420, info = 15, broken links = 0, pinned = 0 (when multiples).

Filename	Errors	Warnings	Hints
Build Errors	3	1	10
/scratch/repo/fsh-generated/includes/fsh-link-references	0	0	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01	0	21	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-CYP2C19	0	74	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-cgexample	0	15	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-cgexample-withGrouping	0	15	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-complexVariant-nonHGVS	0	3	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-compound-heterozygote	0	1	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncology-diagnostic	0	2	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncology-report-example	0	46	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncologyexamples-r4	0	3	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncologyexamples-r4-withGrouping	0	3	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-pgxexample	0	12	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-prequel-prenatal-trisomy13	0	6	1
/scratch/repo/fsh-generated/resources/Bundle-bundle-sequence-phase-relation-CYP2C19	0	2	0
/scratch/repo/fsh-generated/resources/CodeSystem-clinvar-evidence-level-custom-cs	0	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-coded-annotation-types-cs	0	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-knowledge-base-cs	0	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-molecular-biomarker-ontology-cs	0	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-pharmgkb-evidence-level-custom-cs	0	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-sequence-phase-relationship-cs	0	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-tbd-codes-cs	0	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-variant-confidence-status-cs	0	0	0
/scratch/repo/fsh-generated/resources/ConceptMap-dna-change-type-map	0	7	1
/scratch/repo/fsh-generated/resources/Device-triodenovo-software	0	0	0
/scratch/repo/fsh-generated/resources/DiagnosticReport-GenomicReportExample01	0	0	0
/scratch/repo/fsh-generated/resources/DiagnosticReport-PGxGenomicReportEMERGE	0	0	0
/scratch/repo/fsh-generated/resources/DiagnosticReport-PGxGenomicReportEMERGE-withGrouping	0	0	0
/scratch/repo/fsh-generated/resources/DiagnosticReport-diagnosticreport-hla-glstring-r4	0	0	0
/scratch/repo/fsh-generated/resources/DiagnosticReport-somaticReport	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-CNVAnalysis-called	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-FullGenome-GRCh38	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-SimpleVariantAnalysis-called	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-UncallableRegions	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-WES-FullSequencedRegion-GRCh38	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-WES-UncallableRegions-GRCh38	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-genomicFileFatherBAM	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-genomicFileMotherBAM	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-genomicFileProbandBAM	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-genomicFileProbandVCF	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-genomicVCFfile-cnv	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-genomicVCFfile-simple	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-somaticVCFfile	0	0	0
/scratch/repo/fsh-generated/resources/GenomicStudy-PGXGenomicStudy	0	0	0
/scratch/repo/fsh-generated/resources/GenomicStudy-genomicstudy-trio2	0	0	0
/scratch/repo/fsh-generated/resources/GenomicStudy-lungMass	0	4	0
/scratch/repo/fsh-generated/resources/GenomicStudy-somaticStudy	0	6	0
/scratch/repo/fsh-generated/resources/ImplementationGuide-genomics-reporting	1	1	0
/scratch/repo/fsh-generated/resources/MedicationStatement-MedicationStatementWarfarin	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ATR-insertion-molc	0	3	0
/scratch/repo/fsh-generated/resources/Observation-ATR-insertion-significance	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ATR-insertion-var	0	4	0
/scratch/repo/fsh-generated/resources/Observation-AnnotationExample	0	0	0
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-molc	0	1	0
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-significance	0	0	0
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-therapuDrug1	0	0	0
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-therapuDrug2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-var	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ExampleGermlineCNV	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ExampleGermlineDEL	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ExampleGermlineINV	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ExampleSomaticCNV	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ExampleSomaticDEL	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ExampleSomaticINV	0	2	0
/scratch/repo/fsh-generated/resources/Observation-Genotype-Clinical-Trial-Example-using-haplotypes	0	1	0
/scratch/repo/fsh-generated/resources/Observation-GenotypeExample1	0	2	0
/scratch/repo/fsh-generated/resources/Observation-GenotypeExamplePharmVar	0	1	0
/scratch/repo/fsh-generated/resources/Observation-GrouperEx01	0	0	0
/scratch/repo/fsh-generated/resources/Observation-GrouperEx02	0	0	0
/scratch/repo/fsh-generated/resources/Observation-GrouperEx03	0	0	0
/scratch/repo/fsh-generated/resources/Observation-HER2byImmuneStainExample	0	1	0
/scratch/repo/fsh-generated/resources/Observation-HER2byImmunoassayExample	0	1	0
/scratch/repo/fsh-generated/resources/Observation-HLA-A-haplotype1	0	3	0
/scratch/repo/fsh-generated/resources/Observation-HLA-A-haplotype2	0	3	0
/scratch/repo/fsh-generated/resources/Observation-HLA-B-haplotype1	0	2	0
/scratch/repo/fsh-generated/resources/Observation-HLA-B-haplotype2	0	2	0
/scratch/repo/fsh-generated/resources/Observation-HLA-C-haplotype1	0	2	0
/scratch/repo/fsh-generated/resources/Observation-HLA-C-haplotype2	0	2	0
/scratch/repo/fsh-generated/resources/Observation-HaplotypeExamplePharmVar01	0	2	0
/scratch/repo/fsh-generated/resources/Observation-HaplotypeExamplePharmVar02	0	2	0
/scratch/repo/fsh-generated/resources/Observation-HaplotypeSet-Clinical-Trial-Example-1of2	0	2	0
/scratch/repo/fsh-generated/resources/Observation-HaplotypeSet-Clinical-Trial-Example-2of2	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ISCN-CMLExample	0	1	0
/scratch/repo/fsh-generated/resources/Observation-ISCN-CMLImplication	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ISCN-NormalExample	0	1	0
/scratch/repo/fsh-generated/resources/Observation-MSH2-del-disease	0	0	0
/scratch/repo/fsh-generated/resources/Observation-MSH2-del-molc	0	1	0
/scratch/repo/fsh-generated/resources/Observation-MSH2-del-var	0	4	0
/scratch/repo/fsh-generated/resources/Observation-MSIExample	0	0	0
/scratch/repo/fsh-generated/resources/Observation-MicrosatelliteInstabilityExample01	0	0	0
/scratch/repo/fsh-generated/resources/Observation-MultipleRepeatExpansions	0	2	0
/scratch/repo/fsh-generated/resources/Observation-NOTCH1-significance	0	0	0
/scratch/repo/fsh-generated/resources/Observation-NOTCH1-uncertain-molc	0	2	0
/scratch/repo/fsh-generated/resources/Observation-NOTCH1-uncertain-var	0	3	0
/scratch/repo/fsh-generated/resources/Observation-NTHL1-snv-disease	0	0	0
/scratch/repo/fsh-generated/resources/Observation-NTHL1-snv-molc	0	1	0
/scratch/repo/fsh-generated/resources/Observation-NTHL1-snv-var	0	3	0
/scratch/repo/fsh-generated/resources/Observation-PDL1Example	0	1	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-geno-1001	0	2	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-geno-1002	0	1	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-geno-1003	0	1	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1011	0	3	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1012	0	3	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1013	0	3	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1014	0	3	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1015	0	3	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1016	0	4	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1017	0	4	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1018	0	4	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1019	0	3	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1020	0	4	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1021	0	4	0
/scratch/repo/fsh-generated/resources/Observation-PolyGenicDiagnosticImpExample	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion	0	1	0
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion-disease	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion-therapuDrug	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion-therapuTrial	0	1	0
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion-var	0	1	0
/scratch/repo/fsh-generated/resources/Observation-RepeatExpansion	0	3	0
/scratch/repo/fsh-generated/resources/Observation-SNVexample	0	2	0
/scratch/repo/fsh-generated/resources/Observation-STAG2-insertion-molc	0	2	0
/scratch/repo/fsh-generated/resources/Observation-STAG2-insertion-significance	0	0	0
/scratch/repo/fsh-generated/resources/Observation-STAG2-insertion-var	0	4	0
/scratch/repo/fsh-generated/resources/Observation-SequencePhaseRelationExample1	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TMB-therapuDrug	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TMBExample	0	0	0
/scratch/repo/fsh-generated/resources/Observation-Therapeutic-Implication-Clinical-Trial-2	0	1	0
/scratch/repo/fsh-generated/resources/Observation-Therapeutic-Implication-Clinical-Trial-Somatic	0	1	0
/scratch/repo/fsh-generated/resources/Observation-TherapeuticImplicationExample1	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TumorMutationBurdenExample01	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TxImp01	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TxImp02	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TxImp03	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TxImp04	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TxImp05	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TxImp06	0	0	0
/scratch/repo/fsh-generated/resources/Observation-Variant-Somatic-Clinical-Trial	0	1	0
/scratch/repo/fsh-generated/resources/Observation-VariantExample	0	1	0
/scratch/repo/fsh-generated/resources/Observation-VariantExample1	0	0	0
/scratch/repo/fsh-generated/resources/Observation-VariantExample2	0	1	0
/scratch/repo/fsh-generated/resources/Observation-ZFHX3-significance	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ZFHX3-uncertain-molc	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ZFHX3-uncertain-var	0	3	0
/scratch/repo/fsh-generated/resources/Observation-diagnosticImplication-interact-smn1-smn2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-genotype-hla-a-glstring-r4	0	3	0
/scratch/repo/fsh-generated/resources/Observation-haplotype-hla-a-1-r4	0	2	0
/scratch/repo/fsh-generated/resources/Observation-molec-conseq1	0	4	0
/scratch/repo/fsh-generated/resources/Observation-molec-conseq2	0	2	0
/scratch/repo/fsh-generated/resources/Observation-molec-conseq3	0	2	0
/scratch/repo/fsh-generated/resources/Observation-molec-conseq4	0	2	0
/scratch/repo/fsh-generated/resources/Observation-obs-idh-ex	0	3	0
/scratch/repo/fsh-generated/resources/Observation-obs1-interact-smn1-smn2	0	3	0
/scratch/repo/fsh-generated/resources/Observation-obs2-interact-smn1-smn2	0	3	0
/scratch/repo/fsh-generated/resources/Observation-pop-allele-freq	0	0	0
/scratch/repo/fsh-generated/resources/Observation-therapuDrug1-interact-smn1-smn2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-therapuDrug2-interact-smn1-smn2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-therapuDrug3-interact-smn1-smn2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-variant-with-molec-consequences	0	1	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-dx-implications	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-molecular-consequences	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-specific-haplotypes	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-specific-variants	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-structural-intersecting-variants	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-structural-subsuming-variants	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-tx-implications	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-study-metadata	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-dx-implications	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-haplotypes	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-molecular-consequences	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-specific-haplotypes	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-specific-variants	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-structural-intersecting-variants	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-structural-subsuming-variants	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-tx-implications	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-variants	0	0	0
/scratch/repo/fsh-generated/resources/Organization-ExampleLab	0	0	0
/scratch/repo/fsh-generated/resources/Organization-ExampleOrg	0	0	0
/scratch/repo/fsh-generated/resources/Organization-performingOrganization	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindALLPopulationSpecificVariantsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindANYPopulationSpecificVariantsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationDxImplicationsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationMolecConseqOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationSpecificHaplotypesOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationStructuralIntersectingVariantsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationStructuralSubsumingVariantsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationTxImplicationsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindStudyMetadataOutput	0	4	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectDxImplicationsOutput	0	1	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectHaplotypesOutput	0	6	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectMolecConseqOutput	0	11	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectSpecificHaplotypesOutput	0	3	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectSpecificVariantsOutput	0	1	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectStructuralIntersectingVariantsOutput	0	2	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectStructuralSubsumingVariantsOutput	0	2	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectTxImplicationsOutput	0	1	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectVariantsOutput	0	1	0
/scratch/repo/fsh-generated/resources/Patient-CGPatientExample01	0	0	0
/scratch/repo/fsh-generated/resources/Patient-ExamplePatient	0	0	0
/scratch/repo/fsh-generated/resources/Patient-HG00403	0	0	0
/scratch/repo/fsh-generated/resources/Patient-denovoChild	0	0	0
/scratch/repo/fsh-generated/resources/Patient-denovoFather	0	0	0
/scratch/repo/fsh-generated/resources/Patient-denovoMother	0	0	0
/scratch/repo/fsh-generated/resources/Patient-genomicPatient	0	0	0
/scratch/repo/fsh-generated/resources/Patient-somaticPatient	0	0	0
/scratch/repo/fsh-generated/resources/Practitioner-orderingPractitioner	0	0	0
/scratch/repo/fsh-generated/resources/Practitioner-pathologistPractitioner	0	0	0
/scratch/repo/fsh-generated/resources/Practitioner-practitioner02	0	0	0
/scratch/repo/fsh-generated/resources/Practitioner-supervisorPractitioner	0	0	0
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n/a Show Validation Information

ImplementationGuide/genomics-reporting

error

This IG is version 6.0.0-ballot3, while the IG 'hl7.terminology.r5' is from version 5.0.0

ImplementationGuide/genomics-reporting

error

This IG is version 6.0.0-ballot3, while the IG 'hl7.fhir.uv.extensions.r5' is from version 5.0.0

ImplementationGuide/genomics-reporting

error

This IG is version 6.0.0-ballot3, while the IG 'hl7.fhir.uv.tools.r5' is from version 5.0.0

warning

The jira specification file appears to be out of date with the versions, artifacts and pages currently defined in the IG. A proposed revised file to be reviewed and, if appropriate, submitted as a pull request against the XML folder in https://github.com/HL7/JIRA-Spec-Artifacts. To see the differences, perform a file compare on 'template/jira-current.xml' (a normalized view of what is in Github) and 'template/jira-new.xml' (reflects current IG content)

CodeSystem-knowledge-base-cs.html

information

The html source contains the word 'SHALL' but it is not in a text phrase marked as a conformance clause: ' This example code systems provides examples on how to properly display the knowledge base version number. Version numbers should always be followed by the letter v and calendar dates are displayed Month Day Year. For clarity the month SHALL be written in full. ' CONFORMANCE_STATEMENT_WORD

StructureDefinition-coded-annotation.html

information

The html source contains the word 'SHALL' but it is not in a text phrase marked as a conformance clause: 'If there is a possibility of transporting the content of the note in a structured manner the usage of CodedAnnotation is forbidden and the corresponding data structures SHALL be used. For example, if the text to send resembles the interpretation or impression of the Observation, this guide adds Observation.component slice for conclusion-string which is more appropriate than a note. This would include text like interpretative information (typically canned) about a variant identified in the patient. This slice is defined in the Genomic Base profile, which every observation builds upon. Therefore, this component is a defined slice on all observations profiles defined in this Implementation Guide.' CONFORMANCE_STATEMENT_WORD

StructureDefinition-genotype.html

information

The html source contains the word 'SHOULD' but it is not in a text phrase marked as a conformance clause: 'For Pharmacogenomics, implementers SHOULD send coded haplotypes, and for genotypes (diplotypes) MAY use a simple, human readable grammar of:' CONFORMANCE_STATEMENT_WORD

StructureDefinition-haplotype.html

information

The html source contains the word 'SHOULD' but it is not in a text phrase marked as a conformance clause: 'For Pharmacogenomics, implementers SHOULD send coded haplotypes. Here is an example using PharmVar:' CONFORMANCE_STATEMENT_WORD

StructureDefinition-implication.html

information

The html source contains the word 'SHALL' but it is not in a text phrase marked as a conformance clause: 'Where implications have fields with cardinality > 1, the inclusion of multiple values within a field SHALL indicate an 'AND' condition. An 'OR' condition SHALL be represented by multiple observation instances.' CONFORMANCE_STATEMENT_WORD

StructureDefinition-therapeutic-implication.html

information

The html source contains the word 'SHALL' but it is not in a text phrase marked as a conformance clause: 'There are two ways to communicate details about a medication whose implication is being described. The profile component medication-assessed is the place to communicate a simple code for the medication. If more detail about the medication is to be shared, use the extension named medication-assessed-reference. The extension can refer to a Medication or MedicationKnowledge resource. This might be used to share specific classification details if they are important as part of the implication being described. It is important to note that since there two ways to do this, implementers SHALL ensure consistent usage. If both the extension and component are used at the same time, they SHALL deliver the same medication. Because this is an international profile, no guidance is provided on drug coding systems.' CONFORMANCE_STATEMENT_WORD

artifacts.html

information

The html source contains the word 'SHALL' but it is not in a text phrase marked as a conformance clause: 'This example code systems provides examples on how to properly display the knowledge base version number. Version numbers should always be followed by the letter v and calendar dates are displayed Month Day Year. For clarity the month SHALL be written in full.' CONFORMANCE_STATEMENT_WORD

general.html

information

The html source contains the word 'SHOULD' but it is not in a text phrase marked as a conformance clause: 'The GenomicStudy instance SHOULD be referenced from a report and CAN be referenced by various observations.' CONFORMANCE_STATEMENT_WORD

pharmacogenomics.html

information

The html source contains the word 'MAY' but it is not in a text phrase marked as a conformance clause: 'Genotype names such as star-alleles can appear in PGx reports either with or without a full description of the underlying coded haplotypes and observed variants. Genotype names MAY be coded, but will oftentimes be textual descriptions only. PGx guidance is often available at the level of these genotypes.' CONFORMANCE_STATEMENT_WORD

sequencing.html

information

The html source contains the word 'MAY' but it is not in a text phrase marked as a conformance clause: 'For each variant reporting pattern, different components MUST be used to properly define the variant where possible. Other components MAY be used to provide additional information for cross referencing external sources or increasing human readability of the instance.' CONFORMANCE_STATEMENT_WORD

fsh-generated/includes/fsh-link-references.md Show Validation Information (0)

✓

fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.json Show Validation Information (74)

Path

Severity

Message

Validating

Bundle.entry[5].resource/*Observation/CG-IG-HLA-FullBundle-01-10*/.value.ofType(CodeableConcept).coding[0].system (l274/c10)

warning

A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Validation Results for GenomicsReporting

n/a Show Validation Information

fsh-generated/includes/fsh-link-references.md Show Validation Information (0)

fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.json Show Validation Information (74)

fsh-generated/resources/Bundle-bundle-CYP2C19.json Show Validation Information (747)

fsh-generated/resources/Bundle-bundle-cgexample.json Show Validation Information (95)

fsh-generated/resources/Bundle-bundle-cgexample-withGrouping.json Show Validation Information (106)

fsh-generated/resources/Bundle-bundle-complexVariant-nonHGVS.json Show Validation Information (9)

fsh-generated/resources/Bundle-bundle-compound-heterozygote.json Show Validation Information (9)

fsh-generated/resources/Bundle-bundle-oncology-diagnostic.json Show Validation Information (28)

fsh-generated/resources/Bundle-bundle-oncology-report-example.json Show Validation Information (126)

fsh-generated/resources/Bundle-bundle-oncologyexamples-r4.json Show Validation Information (99)

fsh-generated/resources/Bundle-bundle-oncologyexamples-r4-withGrouping.json Show Validation Information (115)

fsh-generated/resources/Bundle-bundle-pgxexample.json Show Validation Information (72)

fsh-generated/resources/Bundle-bundle-prequel-prenatal-trisomy13.json Show Validation Information (83)

fsh-generated/resources/Bundle-bundle-sequence-phase-relation-CYP2C19.json Show Validation Information (35)

fsh-generated/resources/CodeSystem-clinvar-evidence-level-custom-cs.json Show Validation Information (1)

fsh-generated/resources/CodeSystem-coded-annotation-types-cs.json Show Validation Information (1)

fsh-generated/resources/CodeSystem-knowledge-base-cs.json Show Validation Information (1)

fsh-generated/resources/CodeSystem-molecular-biomarker-ontology-cs.json Show Validation Information (1)

fsh-generated/resources/CodeSystem-pharmgkb-evidence-level-custom-cs.json Show Validation Information (1)

fsh-generated/resources/CodeSystem-sequence-phase-relationship-cs.json Show Validation Information (1)

fsh-generated/resources/CodeSystem-tbd-codes-cs.json Show Validation Information (1)

fsh-generated/resources/CodeSystem-variant-confidence-status-cs.json Show Validation Information (1)

fsh-generated/resources/ConceptMap-dna-change-type-map.json Show Validation Information (1)

fsh-generated/resources/Device-triodenovo-software.json Show Validation Information (1)

fsh-generated/resources/DiagnosticReport-GenomicReportExample01.json Show Validation Information (1)

fsh-generated/resources/DiagnosticReport-PGxGenomicReportEMERGE.json Show Validation Information (1)

fsh-generated/resources/DiagnosticReport-PGxGenomicReportEMERGE-withGrouping.json Show Validation Information (1)

fsh-generated/resources/DiagnosticReport-diagnosticreport-hla-glstring-r4.json Show Validation Information (1)

fsh-generated/resources/DiagnosticReport-somaticReport.json Show Validation Information (1)

fsh-generated/resources/DocumentReference-CNVAnalysis-called.json Show Validation Information (1)

fsh-generated/resources/DocumentReference-FullGenome-GRCh38.json Show Validation Information (1)

fsh-generated/resources/DocumentReference-SimpleVariantAnalysis-called.json Show Validation Information (1)

fsh-generated/resources/DocumentReference-UncallableRegions.json Show Validation Information (1)

fsh-generated/resources/DocumentReference-WES-FullSequencedRegion-GRCh38.json Show Validation Information (1)

fsh-generated/resources/DocumentReference-WES-UncallableRegions-GRCh38.json Show Validation Information (1)

fsh-generated/resources/DocumentReference-genomicFileFatherBAM.json Show Validation Information (1)

fsh-generated/resources/DocumentReference-genomicFileMotherBAM.json Show Validation Information (1)

fsh-generated/resources/DocumentReference-genomicFileProbandBAM.json Show Validation Information (1)

fsh-generated/resources/DocumentReference-genomicFileProbandVCF.json Show Validation Information (1)

fsh-generated/resources/DocumentReference-genomicVCFfile-cnv.json Show Validation Information (1)

fsh-generated/resources/DocumentReference-genomicVCFfile-simple.json Show Validation Information (1)

fsh-generated/resources/DocumentReference-somaticVCFfile.json Show Validation Information (1)

fsh-generated/resources/GenomicStudy-PGXGenomicStudy.json Show Validation Information (1)

fsh-generated/resources/GenomicStudy-genomicstudy-trio2.json Show Validation Information (1)

fsh-generated/resources/GenomicStudy-lungMass.json Show Validation Information (1)

fsh-generated/resources/GenomicStudy-somaticStudy.json Show Validation Information (1)

fsh-generated/resources/ImplementationGuide-genomics-reporting.json Show Validation Information (1)

fsh-generated/resources/MedicationStatement-MedicationStatementWarfarin.json Show Validation Information (1)

fsh-generated/resources/Observation-ATR-insertion-molc.json Show Validation Information (9)

fsh-generated/resources/Observation-ATR-insertion-significance.json Show Validation Information (9)

fsh-generated/resources/Observation-ATR-insertion-var.json Show Validation Information (9)

fsh-generated/resources/Observation-AnnotationExample.json Show Validation Information (1)

fsh-generated/resources/Observation-EGFR-L858R-molc.json Show Validation Information (9)

fsh-generated/resources/Observation-EGFR-L858R-significance.json Show Validation Information (9)

fsh-generated/resources/Observation-EGFR-L858R-therapuDrug1.json Show Validation Information (9)

fsh-generated/resources/Observation-EGFR-L858R-therapuDrug2.json Show Validation Information (9)

fsh-generated/resources/Observation-EGFR-L858R-var.json Show Validation Information (9)

fsh-generated/resources/Observation-ExampleGermlineCNV.json Show Validation Information (1)

fsh-generated/resources/Observation-ExampleGermlineDEL.json Show Validation Information (1)

fsh-generated/resources/Observation-ExampleGermlineINV.json Show Validation Information (1)

fsh-generated/resources/Observation-ExampleSomaticCNV.json Show Validation Information (1)

fsh-generated/resources/Observation-ExampleSomaticDEL.json Show Validation Information (1)

fsh-generated/resources/Observation-ExampleSomaticINV.json Show Validation Information (1)

fsh-generated/resources/Observation-Genotype-Clinical-Trial-Example-using-haplotypes.json Show Validation Information (5)

fsh-generated/resources/Observation-GenotypeExample1.json Show Validation Information (9)

fsh-generated/resources/Observation-GenotypeExamplePharmVar.json Show Validation Information (1)

fsh-generated/resources/Observation-GrouperEx01.json Show Validation Information (9)

fsh-generated/resources/Observation-GrouperEx02.json Show Validation Information (9)

fsh-generated/resources/Observation-GrouperEx03.json Show Validation Information (9)

fsh-generated/resources/Observation-HER2byImmuneStainExample.json Show Validation Information (1)

fsh-generated/resources/Observation-HER2byImmunoassayExample.json Show Validation Information (1)

fsh-generated/resources/Observation-HLA-A-haplotype1.json Show Validation Information (9)

fsh-generated/resources/Observation-HLA-A-haplotype2.json Show Validation Information (9)

fsh-generated/resources/Observation-HLA-B-haplotype1.json Show Validation Information (9)

fsh-generated/resources/Observation-HLA-B-haplotype2.json Show Validation Information (9)

fsh-generated/resources/Observation-HLA-C-haplotype1.json Show Validation Information (9)

fsh-generated/resources/Observation-HLA-C-haplotype2.json Show Validation Information (9)

fsh-generated/resources/Observation-HaplotypeExamplePharmVar01.json Show Validation Information (3)