Violent Death and Overdose Reporting (VDOR) FHIR Implementation Guide
0.1.1-cibuild - CI Build US

Violent Death and Overdose Reporting (VDOR) FHIR Implementation Guide, published by HL7 International / Public Health. This guide is not an authorized publication; it is the continuous build for version 0.1.1-cibuild built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-vdor/ and changes regularly. See the Directory of published versions

Resource Profile: VDOR Toxicology - Toxicology Specimen ( Experimental )

Official URL: http://hl7.org/fhir/us/vdor/StructureDefinition/vdor-toxicology-specimen Version: 0.1.1-cibuild
Standards status: Informative Computable Name: VDORToxicologySpecimen

Defines constraints on the Specimen resource to capture data on specimens used for Toxicology Findings

Usages:

  • This Profile is not used by any profiles in this Specification

You can also check for usages in the FHIR IG Statistics

Formal Views of Profile Content

Description of Profiles, Differentials, Snapshots and how the different presentations work.

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* SpecimenToxicologyLab The specimen sent by a Medical Examiner, Coroner, or autopsy performer to a toxicology lab for analysis.
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
... identifier SΣ 0..* Identifier System-generated identifier for this Specimen.
... status ?!Σ 0..1 code available | unavailable | unsatisfactory | entered-in-error
Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
... type SΣ 1..1 CodeableConcept Type of tissue or material
Binding: v2 Specimen Type (example): The type of the specimen.
.... coding SΣ 0..* Coding Code defined by a terminology system
.... text SΣ 1..1 string Plain text representation of the concept
... subject SΣ 0..1 Reference(US Core Patient Profile) The subject is the decedent.
... receivedTime SΣ 0..1 dateTime Time when specimen was received by the forensic toxicology lab for processing
... parent S 0..* Reference(Specimen - Toxicology Lab) Specimen from which this specimen originated
... collection S 0..1 BackboneElement Collection details
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... collected[x] SΣ 0..1 Time collected from either the body or the scene
..... collectedDateTime dateTime
..... collectedPeriod Period
... processing S 0..* BackboneElement Processing and processing step details
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... time[x] S 0..1 Date and time of specimen processing
..... timeDateTime dateTime
..... timePeriod Period
... container 0..* BackboneElement Direct container of specimen (tube/slide, etc.)
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... identifier SΣ 0..* Identifier Id for the container
.... description 1..1 string Textual description of the container
.... additive[x] S 0..1 Additive associated with container
Binding: v2 Additive (example): Substance added to specimen container.
..... additiveCodeableConcept CodeableConcept
..... additiveReference Reference(Substance)
... condition SΣ 0..* CodeableConcept State of the specimen
Binding: v2 Specimen Condition (extensible): Codes describing the state of the specimen.
... note S 0..* Annotation Details or issues about the specimen or reason for no analysis

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Specimen.status Base required SpecimenStatus 📍4.0.1 FHIR Std.
Specimen.type Base example v2 Specimen Type 📦2.9 FHIR Std.
Specimen.container.additive[x] Base example v2 Additive 📦2.9 FHIR Std.
Specimen.condition Base extensible v2 Specimen Condition 📦2.9 FHIR Std.

Constraints

Id Grade Path(s) Description Expression
dom-2 error Specimen If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Specimen If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Specimen If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Specimen If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Specimen A resource should have narrative for robust management text.`div`.exists()
ele-1 error **ALL** elements All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error **ALL** extensions Must have either extensions or value[x], not both extension.exists() != value.exists()

This structure is derived from SpecimenToxicologyLab

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* SpecimenToxicologyLab The specimen sent by a Medical Examiner, Coroner, or autopsy performer to a toxicology lab for analysis.

doco Documentation for this format
NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* SpecimenToxicologyLab The specimen sent by a Medical Examiner, Coroner, or autopsy performer to a toxicology lab for analysis.
... id Σ 0..1 id Logical id of this artifact
... meta Σ 0..1 Meta Metadata about the resource
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... text 0..1 Narrative Text summary of the resource, for human interpretation
This profile does not constrain the narrative in regard to content, language, or traceability to data elements
... contained 0..* Resource Contained, inline Resources
... extension 0..* Extension Additional content defined by implementations
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
... identifier SΣ 0..* Identifier System-generated identifier for this Specimen.
... accessionIdentifier SΣ 0..1 Identifier Identifier assigned by the lab
... status ?!Σ 0..1 code available | unavailable | unsatisfactory | entered-in-error
Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
... type SΣ 1..1 CodeableConcept Type of tissue or material
Binding: v2 Specimen Type (example): The type of the specimen.
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
.... coding SΣ 0..* Coding Code defined by a terminology system
.... text SΣ 1..1 string Plain text representation of the concept
... subject SΣ 0..1 Reference(US Core Patient Profile) The subject is the decedent.
... receivedTime SΣ 0..1 dateTime Time when specimen was received by the forensic toxicology lab for processing
... parent S 0..* Reference(Specimen - Toxicology Lab) Specimen from which this specimen originated
... request 0..* Reference(ServiceRequest) Why the specimen was collected
... collection S 0..1 BackboneElement Collection details
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... collector Σ 0..1 Reference(Practitioner | PractitionerRole) Who collected the specimen
.... collected[x] SΣ 0..1 Time collected from either the body or the scene
..... collectedDateTime dateTime
..... collectedPeriod Period
.... duration Σ 0..1 Duration How long it took to collect specimen
.... quantity 0..1 SimpleQuantity The quantity of specimen collected
.... method 0..1 CodeableConcept Technique used to perform collection
Binding: FHIRSpecimenCollectionMethod (example): The technique that is used to perform the procedure.
.... bodySite 0..1 CodeableConcept Anatomical collection site
Binding: SNOMEDCTBodyStructures (example): Codes describing anatomical locations. May include laterality.
.... fastingStatus[x] Σ 0..1 Whether or how long patient abstained from food and/or drink
Binding: v2 Relevant Clincial Information (extensible): Codes describing the fasting status of the patient.
..... fastingStatusCodeableConcept CodeableConcept
..... fastingStatusDuration Duration
... processing S 0..* BackboneElement Processing and processing step details
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... description 0..1 string Textual description of procedure
.... procedure 0..1 CodeableConcept Indicates the treatment step applied to the specimen
Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen.
.... additive 0..* Reference(Substance) Material used in the processing step
.... time[x] S 0..1 Date and time of specimen processing
..... timeDateTime dateTime
..... timePeriod Period
... container 0..* BackboneElement Direct container of specimen (tube/slide, etc.)
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... identifier SΣ 0..* Identifier Id for the container
.... description 1..1 string Textual description of the container
.... type 0..1 CodeableConcept Kind of container directly associated with specimen
Binding: SpecimenContainerType (example): Type of specimen container.
.... capacity 0..1 SimpleQuantity Container volume or size
.... specimenQuantity 0..1 SimpleQuantity Quantity of specimen within container
.... additive[x] S 0..1 Additive associated with container
Binding: v2 Additive (example): Substance added to specimen container.
..... additiveCodeableConcept CodeableConcept
..... additiveReference Reference(Substance)
... condition SΣ 0..* CodeableConcept State of the specimen
Binding: v2 Specimen Condition (extensible): Codes describing the state of the specimen.
... note S 0..* Annotation Details or issues about the specimen or reason for no analysis

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Specimen.language Base preferred Common Languages 📦4.0.1 FHIR Std.
Specimen.status Base required SpecimenStatus 📍4.0.1 FHIR Std.
Specimen.type Base example v2 Specimen Type 📦2.9 FHIR Std.
Specimen.collection.​method Base example FHIR Specimen Collection Method 📦4.0.1 FHIR Std.
Specimen.collection.​bodySite Base example SNOMED CT Body Structures 📦4.0.1 FHIR Std.
Specimen.collection.​fastingStatus[x] Base extensible v2 Relevant Clincial Information 📦2.9 FHIR Std.
Specimen.processing.​procedure Base example Specimen processing procedure 📦4.0.1 FHIR Std.
Specimen.container.type Base example Specimen Container Type 📦4.0.1 FHIR Std.
Specimen.container.additive[x] Base example v2 Additive 📦2.9 FHIR Std.
Specimen.condition Base extensible v2 Specimen Condition 📦2.9 FHIR Std.

Constraints

Id Grade Path(s) Description Expression
dom-2 error Specimen If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Specimen If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Specimen If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Specimen If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Specimen A resource should have narrative for robust management text.`div`.exists()
ele-1 error **ALL** elements All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error **ALL** extensions Must have either extensions or value[x], not both extension.exists() != value.exists()

This structure is derived from SpecimenToxicologyLab

Summary

Key Elements View

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* SpecimenToxicologyLab The specimen sent by a Medical Examiner, Coroner, or autopsy performer to a toxicology lab for analysis.
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
... identifier SΣ 0..* Identifier System-generated identifier for this Specimen.
... status ?!Σ 0..1 code available | unavailable | unsatisfactory | entered-in-error
Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
... type SΣ 1..1 CodeableConcept Type of tissue or material
Binding: v2 Specimen Type (example): The type of the specimen.
.... coding SΣ 0..* Coding Code defined by a terminology system
.... text SΣ 1..1 string Plain text representation of the concept
... subject SΣ 0..1 Reference(US Core Patient Profile) The subject is the decedent.
... receivedTime SΣ 0..1 dateTime Time when specimen was received by the forensic toxicology lab for processing
... parent S 0..* Reference(Specimen - Toxicology Lab) Specimen from which this specimen originated
... collection S 0..1 BackboneElement Collection details
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... collected[x] SΣ 0..1 Time collected from either the body or the scene
..... collectedDateTime dateTime
..... collectedPeriod Period
... processing S 0..* BackboneElement Processing and processing step details
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... time[x] S 0..1 Date and time of specimen processing
..... timeDateTime dateTime
..... timePeriod Period
... container 0..* BackboneElement Direct container of specimen (tube/slide, etc.)
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... identifier SΣ 0..* Identifier Id for the container
.... description 1..1 string Textual description of the container
.... additive[x] S 0..1 Additive associated with container
Binding: v2 Additive (example): Substance added to specimen container.
..... additiveCodeableConcept CodeableConcept
..... additiveReference Reference(Substance)
... condition SΣ 0..* CodeableConcept State of the specimen
Binding: v2 Specimen Condition (extensible): Codes describing the state of the specimen.
... note S 0..* Annotation Details or issues about the specimen or reason for no analysis

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Specimen.status Base required SpecimenStatus 📍4.0.1 FHIR Std.
Specimen.type Base example v2 Specimen Type 📦2.9 FHIR Std.
Specimen.container.additive[x] Base example v2 Additive 📦2.9 FHIR Std.
Specimen.condition Base extensible v2 Specimen Condition 📦2.9 FHIR Std.

Constraints

Id Grade Path(s) Description Expression
dom-2 error Specimen If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Specimen If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Specimen If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Specimen If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Specimen A resource should have narrative for robust management text.`div`.exists()
ele-1 error **ALL** elements All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error **ALL** extensions Must have either extensions or value[x], not both extension.exists() != value.exists()

Differential View

This structure is derived from SpecimenToxicologyLab

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* SpecimenToxicologyLab The specimen sent by a Medical Examiner, Coroner, or autopsy performer to a toxicology lab for analysis.

doco Documentation for this format

Snapshot View

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* SpecimenToxicologyLab The specimen sent by a Medical Examiner, Coroner, or autopsy performer to a toxicology lab for analysis.
... id Σ 0..1 id Logical id of this artifact
... meta Σ 0..1 Meta Metadata about the resource
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... text 0..1 Narrative Text summary of the resource, for human interpretation
This profile does not constrain the narrative in regard to content, language, or traceability to data elements
... contained 0..* Resource Contained, inline Resources
... extension 0..* Extension Additional content defined by implementations
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
... identifier SΣ 0..* Identifier System-generated identifier for this Specimen.
... accessionIdentifier SΣ 0..1 Identifier Identifier assigned by the lab
... status ?!Σ 0..1 code available | unavailable | unsatisfactory | entered-in-error
Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
... type SΣ 1..1 CodeableConcept Type of tissue or material
Binding: v2 Specimen Type (example): The type of the specimen.
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
.... coding SΣ 0..* Coding Code defined by a terminology system
.... text SΣ 1..1 string Plain text representation of the concept
... subject SΣ 0..1 Reference(US Core Patient Profile) The subject is the decedent.
... receivedTime SΣ 0..1 dateTime Time when specimen was received by the forensic toxicology lab for processing
... parent S 0..* Reference(Specimen - Toxicology Lab) Specimen from which this specimen originated
... request 0..* Reference(ServiceRequest) Why the specimen was collected
... collection S 0..1 BackboneElement Collection details
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... collector Σ 0..1 Reference(Practitioner | PractitionerRole) Who collected the specimen
.... collected[x] SΣ 0..1 Time collected from either the body or the scene
..... collectedDateTime dateTime
..... collectedPeriod Period
.... duration Σ 0..1 Duration How long it took to collect specimen
.... quantity 0..1 SimpleQuantity The quantity of specimen collected
.... method 0..1 CodeableConcept Technique used to perform collection
Binding: FHIRSpecimenCollectionMethod (example): The technique that is used to perform the procedure.
.... bodySite 0..1 CodeableConcept Anatomical collection site
Binding: SNOMEDCTBodyStructures (example): Codes describing anatomical locations. May include laterality.
.... fastingStatus[x] Σ 0..1 Whether or how long patient abstained from food and/or drink
Binding: v2 Relevant Clincial Information (extensible): Codes describing the fasting status of the patient.
..... fastingStatusCodeableConcept CodeableConcept
..... fastingStatusDuration Duration
... processing S 0..* BackboneElement Processing and processing step details
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... description 0..1 string Textual description of procedure
.... procedure 0..1 CodeableConcept Indicates the treatment step applied to the specimen
Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen.
.... additive 0..* Reference(Substance) Material used in the processing step
.... time[x] S 0..1 Date and time of specimen processing
..... timeDateTime dateTime
..... timePeriod Period
... container 0..* BackboneElement Direct container of specimen (tube/slide, etc.)
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... identifier SΣ 0..* Identifier Id for the container
.... description 1..1 string Textual description of the container
.... type 0..1 CodeableConcept Kind of container directly associated with specimen
Binding: SpecimenContainerType (example): Type of specimen container.
.... capacity 0..1 SimpleQuantity Container volume or size
.... specimenQuantity 0..1 SimpleQuantity Quantity of specimen within container
.... additive[x] S 0..1 Additive associated with container
Binding: v2 Additive (example): Substance added to specimen container.
..... additiveCodeableConcept CodeableConcept
..... additiveReference Reference(Substance)
... condition SΣ 0..* CodeableConcept State of the specimen
Binding: v2 Specimen Condition (extensible): Codes describing the state of the specimen.
... note S 0..* Annotation Details or issues about the specimen or reason for no analysis

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Specimen.language Base preferred Common Languages 📦4.0.1 FHIR Std.
Specimen.status Base required SpecimenStatus 📍4.0.1 FHIR Std.
Specimen.type Base example v2 Specimen Type 📦2.9 FHIR Std.
Specimen.collection.​method Base example FHIR Specimen Collection Method 📦4.0.1 FHIR Std.
Specimen.collection.​bodySite Base example SNOMED CT Body Structures 📦4.0.1 FHIR Std.
Specimen.collection.​fastingStatus[x] Base extensible v2 Relevant Clincial Information 📦2.9 FHIR Std.
Specimen.processing.​procedure Base example Specimen processing procedure 📦4.0.1 FHIR Std.
Specimen.container.type Base example Specimen Container Type 📦4.0.1 FHIR Std.
Specimen.container.additive[x] Base example v2 Additive 📦2.9 FHIR Std.
Specimen.condition Base extensible v2 Specimen Condition 📦2.9 FHIR Std.

Constraints

Id Grade Path(s) Description Expression
dom-2 error Specimen If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Specimen If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Specimen If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Specimen If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Specimen A resource should have narrative for robust management text.`div`.exists()
ele-1 error **ALL** elements All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error **ALL** extensions Must have either extensions or value[x], not both extension.exists() != value.exists()

This structure is derived from SpecimenToxicologyLab

Summary

 

Other representations of profile: CSV, Excel, Schematron