FHIR to OMOP FHIR IG
2.0.0-ballot - STU 1 Ballot
FHIR to OMOP FHIR IG
2.0.0-ballot - STU 1 Ballot
FHIR to OMOP FHIR IG, published by HL7 International / Biomedical Research and Regulation. This guide is not an authorized publication; it is the continuous build for version 2.0.0-ballot built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-omop-ig/ and changes regularly. See the Directory of published versions
| Page standards status: Trial-use | Maturity Level: 2 |
@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
# - resource -------------------------------------------------------------------
<http://hl7.org/fhir/StructureMap/ProcedureMap> a fhir:StructureMap ;
fhir:nodeRole fhir:treeRoot ;
fhir:id [ fhir:v "ProcedureMap"] ; #
fhir:language [ fhir:v "en"] ; #
fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div [ fhir:v "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: StructureMap ProcedureMap</b></p><a name=\"ProcedureMap\"> </a><a name=\"hcProcedureMap\"> </a><pre class=\"fml\">#xD;\n<span style=\"color: #cc00cc\">/// <b>url</b> = </span><span style=\"color: blue\">'http://hl7.org/fhir/uv/omop/StructureMap/ProcedureMap'</span>#xD;\n<span style=\"color: #cc00cc\">/// <b>name</b> = </span><span style=\"color: blue\">'ProcedureMap'</span>#xD;\n<span style=\"color: #cc00cc\">/// <b>title</b> = </span><span style=\"color: blue\">'Mapping Procedure resource to Procedure Occurrence OMOP Domain'</span>#xD;\n<span style=\"color: #cc00cc\">/// <b>status</b> = </span><span style=\"color: blue\">'active'</span>#xD;\n<span style=\"color: #cc00cc\">/// <b>description</b> = </span><span style=\"color: blue\">'This mapping maps FHIR Procedure instances to OMOP Procedure Occurrence Table objects.'</span>#xD;\n#xD;\n<b>uses</b><span style=\"color: navy\"> \"</span><a href=\"http://hl7.org/fhir/R5/procedure.html\" title=\"Procedure\">http://hl7.org/fhir/StructureDefinition/Procedure</a><span style=\"color: navy\">\" </span><b>alias </b>Procedure <b>as </b><b>source</b>#xD;\n<b>uses</b><span style=\"color: navy\"> \"</span><a href=\"StructureDefinition-ProcedureOccurrence.html\" title=\"Procedure Occurrence OMOP Table\">http://hl7.org/fhir/uv/omop/StructureDefinition/ProcedureOccurrence</a><span style=\"color: navy\">\" </span><b>alias </b>ProcedureTable <b>as </b><b>target</b>#xD;\n#xD;\n<b>group </b>ProcedureOccurrence<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>Procedure, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\"> : </span>ProcedureTable<span style=\"color: navy\">)</span><span style=\"color: navy\"> {#xD;\n</span> src<b> where </b><span style=\"color: navy\">(</span>src.occurrence.empty().not()<span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {#xD;\n</span> src<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span>tgt<b> then</b><span style=\"color: navy\"> {#xD;\n</span> s.id<b> as </b><span style=\"color: maroon\">id</span><span style=\"color: navy\"><b> -> </b></span>tgt.procedure_occurrence_id = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">id</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'integer'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span> <i>\"procedureID\"</i><span style=\"color: navy\">;</span>#xD;\n src.subject<b> as </b><span style=\"color: maroon\">subject</span><span style=\"color: navy\"><b> -> </b></span>tgt<b> then</b><span style=\"color: navy\"> {#xD;\n</span> subject.reference<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span>tgt.person_id = <span style=\"color: navy\">(</span>%s.substring(%s.indexOf('/') + 1)<span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n src.code<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span>tgt<b> then</b><span style=\"color: navy\"> {#xD;\n</span> s.coding<b> as </b><span style=\"color: maroon\">sc</span><span style=\"color: navy\"><b> -> </b></span>tgt<b> then</b><span style=\"color: navy\"> {#xD;\n</span> sc.code<b> as </b><span style=\"color: maroon\">a</span><span style=\"color: navy\"><b> -> </b></span> tgt.procedure_concept_id = <b>translate</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">a</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'http://hl7.org/fhir/uv/omop/ConceptMap/ProcedureType'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'code'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> tgt.procedure_source_value = <span style=\"color: maroon\">a</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n src.occurrence<span style=\"color: navy\"> : </span>dateTime<b> as </b><span style=\"color: maroon\">edt</span><span style=\"color: navy\"><b> -> </b></span> tgt.procedure_datetime = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">edt</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'dateTime'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> tgt.procedure_date = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">edt</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'date'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>#xD;\n src.occurrence<span style=\"color: navy\"> : </span>Period<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span>tgt<b> then</b><span style=\"color: navy\"> {#xD;\n</span> s.start<b> as </b><span style=\"color: maroon\">start</span><span style=\"color: navy\"><b> -> </b></span> tgt.procedure_datetime = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">start</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'dateTime'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> tgt.procedure_date = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">start</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'date'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>#xD;\n s.end<b> as </b><span style=\"color: maroon\">end</span><span style=\"color: navy\"><b> -> </b></span> tgt.procedure_end_datetime<span style=\"color: navy\">, </span> tgt.procedure_end_date = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">end</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'date'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n src.encounter<b> as </b><span style=\"color: maroon\">encounter</span><span style=\"color: navy\"><b> -> </b></span>tgt<b> then</b><span style=\"color: navy\"> {#xD;\n</span> encounter.reference<b> as </b><span style=\"color: maroon\">e</span><span style=\"color: navy\"><b> -> </b></span>tgt.visit_occurrence_id = <span style=\"color: navy\">(</span>%e.substring(%e.indexOf('/') + 1)<span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span> <i>\"procedureMapping\"</i><span style=\"color: navy\">;</span>#xD;\n<span style=\"color: navy\">}#xD;\n#xD;\n</span></pre></div>"^^rdf:XMLLiteral ]
] ; #
fhir:extension ( [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg"^^xsd:anyURI ] ;
fhir:value [
a fhir:code ;
fhir:v "brr"
]
] [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm"^^xsd:anyURI ] ;
fhir:value [
a fhir:integer ;
fhir:v 2 ;
fhir:extension ( [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom"^^xsd:anyURI ] ;
fhir:value [
a fhir:canonical ;
fhir:v "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop>
]
] )
]
] [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status"^^xsd:anyURI ] ;
fhir:value [
a fhir:code ;
fhir:v "trial-use" ;
fhir:extension ( [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom"^^xsd:anyURI ] ;
fhir:value [
a fhir:canonical ;
fhir:v "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop>
]
] )
]
] ) ; #
fhir:url [ fhir:v "http://hl7.org/fhir/uv/omop/StructureMap/ProcedureMap"^^xsd:anyURI] ; #
fhir:identifier ( [
fhir:system [ fhir:v "urn:ietf:rfc:3986"^^xsd:anyURI ] ;
fhir:value [ fhir:v "urn:oid:2.16.840.1.113883.4.642.40.77.43.9" ]
] ) ; #
fhir:version [ fhir:v "2.0.0-ballot"] ; #
fhir:name [ fhir:v "ProcedureMap"] ; #
fhir:title [ fhir:v "Mapping Procedure resource to Procedure Occurrence OMOP Domain"] ; #
fhir:status [ fhir:v "active"] ; #
fhir:date [ fhir:v "2026-08-14T16:09:20+00:00"^^xsd:dateTime] ; #
fhir:publisher [ fhir:v "HL7 International / Biomedical Research and Regulation"] ; #
fhir:contact ( [
fhir:name [ fhir:v "HL7 International / Biomedical Research and Regulation" ] ;
fhir:telecom ( [
fhir:system [ fhir:v "url" ] ;
fhir:value [ fhir:v "http://www.hl7.org/Special/committees/rcrim" ]
] )
] ) ; #
fhir:description [ fhir:v "This mapping maps FHIR Procedure instances to OMOP Procedure Occurrence Table objects."] ; #
fhir:jurisdiction ( [
fhir:coding ( [
fhir:system [ fhir:v "http://unstats.un.org/unsd/methods/m49/m49.htm"^^xsd:anyURI ] ;
fhir:code [ fhir:v "001" ] ;
fhir:display [ fhir:v "World" ]
] )
] ) ; #
fhir:structure ( [
fhir:url [
fhir:v "http://hl7.org/fhir/StructureDefinition/Procedure"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/StructureDefinition/Procedure>
] ;
fhir:mode [ fhir:v "source" ] ;
fhir:alias [ fhir:v "Procedure" ]
] [
fhir:url [
fhir:v "http://hl7.org/fhir/uv/omop/StructureDefinition/ProcedureOccurrence"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/uv/omop/StructureDefinition/ProcedureOccurrence>
] ;
fhir:mode [ fhir:v "target" ] ;
fhir:alias [ fhir:v "ProcedureTable" ]
] ) ; #
fhir:group ( [
fhir:name [ fhir:v "ProcedureOccurrence" ] ;
fhir:input ( [
fhir:name [ fhir:v "src" ] ;
fhir:type [ fhir:v "Procedure" ] ;
fhir:mode [ fhir:v "source" ]
] [
fhir:name [ fhir:v "tgt" ] ;
fhir:type [ fhir:v "ProcedureTable" ] ;
fhir:mode [ fhir:v "target" ]
] ) ;
fhir:rule ( [
fhir:name [ fhir:v "procedureMapping" ] ;
fhir:source ( [
fhir:context [ fhir:v "src" ] ;
fhir:condition [ fhir:v "src.occurrence.empty().not()" ]
] ) ;
fhir:rule ( [
fhir:name [ fhir:v "procedureID" ] ;
fhir:source ( [
fhir:context [ fhir:v "src" ] ;
fhir:variable [ fhir:v "s" ]
] ) ;
fhir:target ( [
fhir:context [ fhir:v "tgt" ]
] ) ;
fhir:rule ( [
fhir:name [ fhir:v "id" ] ;
fhir:source ( [
fhir:context [ fhir:v "s" ] ;
fhir:element [ fhir:v "id" ] ;
fhir:variable [ fhir:v "id" ]
] ) ;
fhir:target ( [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "procedure_occurrence_id" ] ;
fhir:transform [ fhir:v "cast" ] ;
fhir:parameter ( [
fhir:value [
a fhir:id ;
fhir:v "id"
]
] [
fhir:value [
a fhir:string ;
fhir:v "integer"
]
] )
] )
] )
] [
fhir:name [ fhir:v "subject" ] ;
fhir:source ( [
fhir:context [ fhir:v "src" ] ;
fhir:element [ fhir:v "subject" ] ;
fhir:variable [ fhir:v "subject" ]
] ) ;
fhir:target ( [
fhir:context [ fhir:v "tgt" ]
] ) ;
fhir:rule ( [
fhir:name [ fhir:v "reference" ] ;
fhir:source ( [
fhir:context [ fhir:v "subject" ] ;
fhir:element [ fhir:v "reference" ] ;
fhir:variable [ fhir:v "s" ]
] ) ;
fhir:target ( [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "person_id" ] ;
fhir:transform [ fhir:v "evaluate" ] ;
fhir:parameter ( [
fhir:value [
a fhir:string ;
fhir:v "%s.substring(%s.indexOf('/') + 1)"
]
] )
] )
] )
] [
fhir:name [ fhir:v "code" ] ;
fhir:source ( [
fhir:context [ fhir:v "src" ] ;
fhir:element [ fhir:v "code" ] ;
fhir:variable [ fhir:v "s" ]
] ) ;
fhir:target ( [
fhir:context [ fhir:v "tgt" ]
] ) ;
fhir:rule ( [
fhir:name [ fhir:v "coding" ] ;
fhir:source ( [
fhir:context [ fhir:v "s" ] ;
fhir:element [ fhir:v "coding" ] ;
fhir:variable [ fhir:v "sc" ]
] ) ;
fhir:target ( [
fhir:context [ fhir:v "tgt" ]
] ) ;
fhir:rule ( [
fhir:name [ fhir:v "code" ] ;
fhir:source ( [
fhir:context [ fhir:v "sc" ] ;
fhir:element [ fhir:v "code" ] ;
fhir:variable [ fhir:v "a" ]
] ) ;
fhir:target ( [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "procedure_concept_id" ] ;
fhir:transform [ fhir:v "translate" ] ;
fhir:parameter ( [
fhir:value [
a fhir:id ;
fhir:v "a"
]
] [
fhir:value [
a fhir:string ;
fhir:v "http://hl7.org/fhir/uv/omop/ConceptMap/ProcedureType"
]
] [
fhir:value [
a fhir:string ;
fhir:v "code"
]
] )
] [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "procedure_source_value" ] ;
fhir:transform [ fhir:v "copy" ] ;
fhir:parameter ( [
fhir:value [
a fhir:id ;
fhir:v "a"
]
] )
] )
] )
] )
] [
fhir:name [ fhir:v "occurrenceDateTime" ] ;
fhir:source ( [
fhir:context [ fhir:v "src" ] ;
fhir:type [ fhir:v "dateTime" ] ;
fhir:element [ fhir:v "occurrence" ] ;
fhir:variable [ fhir:v "edt" ]
] ) ;
fhir:target ( [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "procedure_datetime" ] ;
fhir:transform [ fhir:v "cast" ] ;
fhir:parameter ( [
fhir:value [
a fhir:id ;
fhir:v "edt"
]
] [
fhir:value [
a fhir:string ;
fhir:v "dateTime"
]
] )
] [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "procedure_date" ] ;
fhir:transform [ fhir:v "cast" ] ;
fhir:parameter ( [
fhir:value [
a fhir:id ;
fhir:v "edt"
]
] [
fhir:value [
a fhir:string ;
fhir:v "date"
]
] )
] )
] [
fhir:name [ fhir:v "occurrencePeriod" ] ;
fhir:source ( [
fhir:context [ fhir:v "src" ] ;
fhir:type [ fhir:v "Period" ] ;
fhir:element [ fhir:v "occurrence" ] ;
fhir:variable [ fhir:v "s" ]
] ) ;
fhir:target ( [
fhir:context [ fhir:v "tgt" ]
] ) ;
fhir:rule ( [
fhir:name [ fhir:v "start" ] ;
fhir:source ( [
fhir:context [ fhir:v "s" ] ;
fhir:element [ fhir:v "start" ] ;
fhir:variable [ fhir:v "start" ]
] ) ;
fhir:target ( [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "procedure_datetime" ] ;
fhir:transform [ fhir:v "cast" ] ;
fhir:parameter ( [
fhir:value [
a fhir:id ;
fhir:v "start"
]
] [
fhir:value [
a fhir:string ;
fhir:v "dateTime"
]
] )
] [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "procedure_date" ] ;
fhir:transform [ fhir:v "cast" ] ;
fhir:parameter ( [
fhir:value [
a fhir:id ;
fhir:v "start"
]
] [
fhir:value [
a fhir:string ;
fhir:v "date"
]
] )
] )
] [
fhir:name [ fhir:v "end" ] ;
fhir:source ( [
fhir:context [ fhir:v "s" ] ;
fhir:element [ fhir:v "end" ] ;
fhir:variable [ fhir:v "end" ]
] ) ;
fhir:target ( [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "procedure_end_datetime" ]
] [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "procedure_end_date" ] ;
fhir:transform [ fhir:v "cast" ] ;
fhir:parameter ( [
fhir:value [
a fhir:id ;
fhir:v "end"
]
] [
fhir:value [
a fhir:string ;
fhir:v "date"
]
] )
] )
] )
] [
fhir:name [ fhir:v "encounter" ] ;
fhir:source ( [
fhir:context [ fhir:v "src" ] ;
fhir:element [ fhir:v "encounter" ] ;
fhir:variable [ fhir:v "encounter" ]
] ) ;
fhir:target ( [
fhir:context [ fhir:v "tgt" ]
] ) ;
fhir:rule ( [
fhir:name [ fhir:v "reference" ] ;
fhir:source ( [
fhir:context [ fhir:v "encounter" ] ;
fhir:element [ fhir:v "reference" ] ;
fhir:variable [ fhir:v "e" ]
] ) ;
fhir:target ( [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "visit_occurrence_id" ] ;
fhir:transform [ fhir:v "evaluate" ] ;
fhir:parameter ( [
fhir:value [
a fhir:string ;
fhir:v "%e.substring(%e.indexOf('/') + 1)"
]
] )
] )
] )
] )
] )
] ) . #
IG © 2023+ HL7 International / Biomedical Research and Regulation.
Package hl7.fhir.uv.omop#2.0.0-ballot based on FHIR 5.0.0.
Generated
2026-08-14
Links: Table of Contents |
QA Report
| Version History |
|
Propose a change