FHIR to OMOP FHIR IG
1.0.0 - INFORMATIVE 1
FHIR to OMOP FHIR IG
1.0.0 - INFORMATIVE 1
FHIR to OMOP FHIR IG, published by HL7 International / Biomedical Research and Regulation. This guide is not an authorized publication; it is the continuous build for version 1.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-omop-ig/ and changes regularly. See the Directory of published versions
| Page standards status: Informative | Maturity Level: 2 |
<StructureMap xmlns="http://hl7.org/fhir">
<id value="BloodPressureVitalSignsMap"/>
<language value="en"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: StructureMap BloodPressureVitalSignsMap</b></p><a name="BloodPressureVitalSignsMap"> </a><a name="hcBloodPressureVitalSignsMap"> </a><pre class="fml">
<span style="color: #cc00cc">/// <b>url</b> = </span><span style="color: blue">'http://hl7.org/fhir/uv/omop/StructureMap/BloodPressureVitalSignsMap'</span>
<span style="color: #cc00cc">/// <b>name</b> = </span><span style="color: blue">'BloodPressureVitalSignsMap'</span>
<span style="color: #cc00cc">/// <b>title</b> = </span><span style="color: blue">'Mapping Blood Pressure Vital Signs resource to Measurement OMOP Domain'</span>
<span style="color: #cc00cc">/// <b>status</b> = </span><span style="color: blue">'draft'</span>
<b>uses</b><span style="color: navy"> "</span><a href="http://hl7.org/fhir/R5/bp.html" title="Observation Blood Pressure Profile">http://hl7.org/fhir/StructureDefinition/bp</a><span style="color: navy">" </span><b>alias </b>BloodPressure <b>as </b><b>source</b>
<b>uses</b><span style="color: navy"> "</span><a href="http://hl7.org/fhir/R5/bundle.html" title="Bundle">http://hl7.org/fhir/StructureDefinition/Bundle</a><span style="color: navy">" </span><b>as </b><b>target</b>
<b>uses</b><span style="color: navy"> "</span><a href="StructureDefinition-Measurement.html" title="Measurement OMOP Table">http://hl7.org/fhir/uv/omop/StructureDefinition/Measurement</a><span style="color: navy">" </span><b>alias </b>Measurement <b>as </b><b>target</b> <span style="color: navy">// </span><span style="color: green">make the bundle</span>
<b>group </b>bpMap<span style="color: navy">(</span><b>source</b> <span style="color: maroon">src</span><span style="color: navy"> : </span>BloodPressure, <b>target</b> <span style="color: maroon">bundle</span><span style="color: navy"> : </span>Bundle<span style="color: navy">)</span><span style="color: navy"> {
</span> src<span style="color: navy"><b> -> </b></span>bundle.id = <b>uuid</b><span style="color: navy">(</span><span style="color: navy">)</span> <i>"bundleid"</i><span style="color: navy">;</span>
src<span style="color: navy"><b> -> </b></span>bundle.type = <span style="color: blue">'collection'</span> <i>"bundletype"</i><span style="color: navy">;</span>
src<b> as </b><span style="color: maroon">parent</span><span style="color: navy"><b> -> </b></span>bundle.entry<b> as </b><span style="color: maroon">entry</span><b> then</b><span style="color: navy"> {
</span> parent<span style="color: navy"><b> -> </b></span>entry.fullUrl = <span style="color: blue">'BloodPressure'</span> <i>"entryURL"</i><span style="color: navy">;</span>
parent<span style="color: navy"><b> -> </b></span>entry.resource = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Measurement'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">parentTable</span><b> then </b>parentTable<span style="color: navy">(</span><span style="color: maroon">parent</span><span style="color: navy">, </span><span style="color: maroon">parentTable</span><span style="color: navy">)</span> <i>"bpEntryResource"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"bpBundleEntry"</i><span style="color: navy">;</span>
src.component<b> as </b><span style="color: maroon">comp</span><span style="color: navy"><b> -> </b></span>bundle.entry<b> as </b><span style="color: maroon">entry</span><b> then</b><span style="color: navy"> {
</span> comp<span style="color: navy"><b> -> </b></span>entry.fullUrl = <span style="color: blue">'Component 1'</span> <i>"entryURL"</i><span style="color: navy">;</span>
comp<b> where </b>(comp.code.coding.code = '8480-6')<span style="color: navy"><b> -> </b></span>entry.resource = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Measurement'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">sysTable</span><b> then </b>systolicTable<span style="color: navy">(</span><span style="color: maroon">comp</span><span style="color: navy">, </span><span style="color: maroon">sysTable</span><span style="color: navy">)</span> <i>"systolicEntryResource"</i><span style="color: navy">;</span>
comp<b> where </b>(comp.code.coding.code = '8462-4')<span style="color: navy"><b> -> </b></span>entry.resource = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Measurement'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">diasTable</span><b> then </b>diastolicTable<span style="color: navy">(</span><span style="color: maroon">comp</span><span style="color: navy">, </span><span style="color: maroon">diasTable</span><span style="color: navy">)</span> <i>"diastolicEntryResource"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"bpComponentEntries"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><b>group </b>systolicTable<span style="color: navy">(</span><b>source</b> <span style="color: maroon">comp</span>, <b>target</b> <span style="color: maroon">sysTable</span><span style="color: navy"> : </span>Measurement<span style="color: navy">)</span><span style="color: navy"> {
</span> comp.code<span style="color: navy"><b> -> </b></span>sysTable.measurement_concept_id = <span style="color: blue">'3004249'</span><span style="color: navy">;</span>
comp.value<span style="color: navy"> : </span>quantity<b> as </b><span style="color: maroon">qty</span><span style="color: navy"><b> -> </b></span><span style="color: maroon">sysTable</span><b> then</b><span style="color: navy"> {
</span> qty.value<span style="color: navy"><b> -> </b></span>sysTable.value_as_number<span style="color: navy">;</span>
qty.unit<span style="color: navy"><b> -> </b></span>sysTable.unit_concept_id<span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"systolicMeasure"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><b>group </b>diastolicTable<span style="color: navy">(</span><b>source</b> <span style="color: maroon">comp</span>, <b>target</b> <span style="color: maroon">diasTable</span><span style="color: navy"> : </span>Measurement<span style="color: navy">)</span><span style="color: navy"> {
</span> comp.code<span style="color: navy"><b> -> </b></span>diasTable.measurement_concept_id = <span style="color: blue">'3012888'</span><span style="color: navy">;</span>
comp.value<span style="color: navy"> : </span>quantity<b> as </b><span style="color: maroon">qty</span><span style="color: navy"><b> -> </b></span><span style="color: maroon">diasTable</span><b> then</b><span style="color: navy"> {
</span> qty.value<span style="color: navy"><b> -> </b></span>diasTable.value_as_number<span style="color: navy">;</span>
qty.unit<span style="color: navy"><b> -> </b></span>diasTable.unit_concept_id<span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"diastolicMeasure"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><b>group </b>parentTable<span style="color: navy">(</span><b>source</b> <span style="color: maroon">src</span><span style="color: navy"> : </span>BloodPressure, <b>target</b> <span style="color: maroon">tgt</span><span style="color: navy"> : </span>Measurement<span style="color: navy">)</span><span style="color: navy"> {
</span> src.code<b> as </b><span style="color: maroon">s</span><span style="color: navy"><b> -> </b></span><span style="color: maroon">tgt</span><b> then</b><span style="color: navy"> {
</span> s.coding<b> as </b><span style="color: maroon">sc</span><span style="color: navy"><b> -> </b></span><span style="color: maroon">tgt</span><b> then</b><span style="color: navy"> {
</span> sc.code<b> as </b><span style="color: maroon">a</span><span style="color: navy"><b> -> </b></span>tgt.measurement_type_concept_id = <b>translate</b><span style="color: navy">(</span><span style="color: maroon">a</span><span style="color: navy">, </span><span style="color: blue">'http://hl7.org/fhir/uv/omop/ConceptMap/BloodPressureCodes'</span><span style="color: navy">, </span><span style="color: blue">'code'</span><span style="color: navy">)</span><span style="color: navy">;</span>
<span style="color: navy">}</span><span style="color: navy">;</span>
<span style="color: navy">}</span><span style="color: navy">;</span>
src.effective<span style="color: navy"> : </span>dateTime<b> as </b><span style="color: maroon">edt</span><span style="color: navy"><b> -> </b></span> tgt.measurement_datetime = <span style="color: maroon">edt</span><span style="color: navy">, </span> tgt.measurement_date = <b>cast</b><span style="color: navy">(</span><span style="color: maroon">edt</span><span style="color: navy">, </span><span style="color: blue">'date'</span><span style="color: navy">)</span><span style="color: navy">;</span>
src.effective<span style="color: navy"> : </span>Period<b> as </b><span style="color: maroon">s</span><span style="color: navy"><b> -> </b></span><span style="color: maroon">tgt</span><b> then</b><span style="color: navy"> {
</span> s.start<b> as </b><span style="color: maroon">eps</span><span style="color: navy"><b> -> </b></span> tgt.measurement_datetime = <b>cast</b><span style="color: navy">(</span><span style="color: maroon">eps</span><span style="color: navy">, </span><span style="color: blue">'dateTime'</span><span style="color: navy">)</span><span style="color: navy">, </span> tgt.measurement_date = <b>cast</b><span style="color: navy">(</span><span style="color: maroon">eps</span><span style="color: navy">, </span><span style="color: blue">'date'</span><span style="color: navy">)</span><span style="color: navy">;</span>
<span style="color: navy">}</span><span style="color: navy">;</span>
src.issued<b> as </b><span style="color: maroon">s</span><b> where </b>(src.issued.toDate != src.effectiveDateTime)<span style="color: navy"><b> -> </b></span>tgt.measurement_source_value = <b>cast</b><span style="color: navy">(</span><span style="color: maroon">s</span><span style="color: navy">, </span><span style="color: blue">'string'</span><span style="color: navy">)</span><span style="color: navy">;</span>
<span style="color: navy">}
</span></pre></div>
</text>
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-wg">
<valueCode value="brr"/>
</extension>
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm">
<valueInteger value="2">
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom">
<valueCanonical
value="http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"/>
</extension>
</valueInteger>
</extension>
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status">
<valueCode value="informative">
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom">
<valueCanonical
value="http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"/>
</extension>
</valueCode>
</extension>
<url
value="http://hl7.org/fhir/uv/omop/StructureMap/BloodPressureVitalSignsMap"/>
<version value="1.0.0"/>
<name value="BloodPressureVitalSignsMap"/>
<title
value="Mapping Blood Pressure Vital Signs resource to Measurement OMOP Domain"/>
<status value="draft"/>
<date value="2026-04-27T16:39:08+00:00"/>
<publisher value="HL7 International / Biomedical Research and Regulation"/>
<contact>
<name value="HL7 International / Biomedical Research and Regulation"/>
<telecom>
<system value="url"/>
<value value="http://www.hl7.org/Special/committees/rcrim"/>
</telecom>
</contact>
<description
value="This mapping maps blood pressure FHIR Vital Signs instances that are considered measurements to OMOP Measurement Table objects."/>
<jurisdiction>
<coding>
<system value="http://unstats.un.org/unsd/methods/m49/m49.htm"/>
<code value="001"/>
<display value="World"/>
</coding>
</jurisdiction>
<structure>
<url value="http://hl7.org/fhir/StructureDefinition/bp"/>
<mode value="source"/>
<alias value="BloodPressure"/>
</structure>
<structure>
<url value="http://hl7.org/fhir/StructureDefinition/Bundle"/>
<mode value="target"/>
</structure>
<structure>
<url value="http://hl7.org/fhir/uv/omop/StructureDefinition/Measurement"/>
<mode value="target"/>
<alias value="Measurement"/>
<documentation value="make the bundle"/>
</structure>
<group>
<name value="bpMap"/>
<input>
<name value="src"/>
<type value="BloodPressure"/>
<mode value="source"/>
</input>
<input>
<name value="bundle"/>
<type value="Bundle"/>
<mode value="target"/>
</input>
<rule>
<name value="bundleid"/>
<source>
<context value="src"/>
</source>
<target>
<context value="bundle"/>
<element value="id"/>
<transform value="uuid"/>
</target>
</rule>
<rule>
<name value="bundletype"/>
<source>
<context value="src"/>
</source>
<target>
<context value="bundle"/>
<element value="type"/>
<transform value="copy"/>
<parameter>
<valueString value="collection"/>
</parameter>
</target>
</rule>
<rule>
<name value="bpBundleEntry"/>
<source>
<context value="src"/>
<variable value="parent"/>
</source>
<target>
<context value="bundle"/>
<element value="entry"/>
<variable value="entry"/>
</target>
<rule>
<name value="entryURL"/>
<source>
<context value="parent"/>
</source>
<target>
<context value="entry"/>
<element value="fullUrl"/>
<transform value="copy"/>
<parameter>
<valueString value="BloodPressure"/>
</parameter>
</target>
</rule>
<rule>
<name value="bpEntryResource"/>
<source>
<context value="parent"/>
</source>
<target>
<context value="entry"/>
<element value="resource"/>
<variable value="parentTable"/>
<transform value="create"/>
<parameter>
<valueString value="Measurement"/>
</parameter>
</target>
<dependent>
<name value="parentTable"/>
<parameter>
<valueId value="parent"/>
</parameter>
<parameter>
<valueId value="parentTable"/>
</parameter>
</dependent>
</rule>
</rule>
<rule>
<name value="bpComponentEntries"/>
<source>
<context value="src"/>
<element value="component"/>
<variable value="comp"/>
</source>
<target>
<context value="bundle"/>
<element value="entry"/>
<variable value="entry"/>
</target>
<rule>
<name value="entryURL"/>
<source>
<context value="comp"/>
</source>
<target>
<context value="entry"/>
<element value="fullUrl"/>
<transform value="copy"/>
<parameter>
<valueString value="Component 1"/>
</parameter>
</target>
</rule>
<rule>
<name value="systolicEntryResource"/>
<source>
<context value="comp"/>
<condition value="(comp.code.coding.code = '8480-6')"/>
</source>
<target>
<context value="entry"/>
<element value="resource"/>
<variable value="sysTable"/>
<transform value="create"/>
<parameter>
<valueString value="Measurement"/>
</parameter>
</target>
<dependent>
<name value="systolicTable"/>
<parameter>
<valueId value="comp"/>
</parameter>
<parameter>
<valueId value="sysTable"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="diastolicEntryResource"/>
<source>
<context value="comp"/>
<condition value="(comp.code.coding.code = '8462-4')"/>
</source>
<target>
<context value="entry"/>
<element value="resource"/>
<variable value="diasTable"/>
<transform value="create"/>
<parameter>
<valueString value="Measurement"/>
</parameter>
</target>
<dependent>
<name value="diastolicTable"/>
<parameter>
<valueId value="comp"/>
</parameter>
<parameter>
<valueId value="diasTable"/>
</parameter>
</dependent>
</rule>
</rule>
</group>
<group>
<name value="systolicTable"/>
<input>
<name value="comp"/>
<mode value="source"/>
</input>
<input>
<name value="sysTable"/>
<type value="Measurement"/>
<mode value="target"/>
</input>
<rule>
<name value="code"/>
<source>
<context value="comp"/>
<element value="code"/>
</source>
<target>
<context value="sysTable"/>
<element value="measurement_concept_id"/>
<transform value="copy"/>
<parameter>
<valueString value="3004249"/>
</parameter>
</target>
</rule>
<rule>
<name value="systolicMeasure"/>
<source>
<context value="comp"/>
<type value="quantity"/>
<element value="value"/>
<variable value="qty"/>
</source>
<target>
<transform value="copy"/>
<parameter>
<valueId value="sysTable"/>
</parameter>
</target>
<rule>
<name value="value"/>
<source>
<context value="qty"/>
<element value="value"/>
<variable value="vvv"/>
</source>
<target>
<context value="sysTable"/>
<element value="value_as_number"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="unit"/>
<source>
<context value="qty"/>
<element value="unit"/>
<variable value="vvv"/>
</source>
<target>
<context value="sysTable"/>
<element value="unit_concept_id"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
</rule>
</group>
<group>
<name value="diastolicTable"/>
<input>
<name value="comp"/>
<mode value="source"/>
</input>
<input>
<name value="diasTable"/>
<type value="Measurement"/>
<mode value="target"/>
</input>
<rule>
<name value="code"/>
<source>
<context value="comp"/>
<element value="code"/>
</source>
<target>
<context value="diasTable"/>
<element value="measurement_concept_id"/>
<transform value="copy"/>
<parameter>
<valueString value="3012888"/>
</parameter>
</target>
</rule>
<rule>
<name value="diastolicMeasure"/>
<source>
<context value="comp"/>
<type value="quantity"/>
<element value="value"/>
<variable value="qty"/>
</source>
<target>
<transform value="copy"/>
<parameter>
<valueId value="diasTable"/>
</parameter>
</target>
<rule>
<name value="value"/>
<source>
<context value="qty"/>
<element value="value"/>
<variable value="vvv"/>
</source>
<target>
<context value="diasTable"/>
<element value="value_as_number"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="unit"/>
<source>
<context value="qty"/>
<element value="unit"/>
<variable value="vvv"/>
</source>
<target>
<context value="diasTable"/>
<element value="unit_concept_id"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
</rule>
</group>
<group>
<name value="parentTable"/>
<input>
<name value="src"/>
<type value="BloodPressure"/>
<mode value="source"/>
</input>
<input>
<name value="tgt"/>
<type value="Measurement"/>
<mode value="target"/>
</input>
<rule>
<name value="code"/>
<source>
<context value="src"/>
<element value="code"/>
<variable value="s"/>
</source>
<target>
<transform value="copy"/>
<parameter>
<valueId value="tgt"/>
</parameter>
</target>
<rule>
<name value="coding"/>
<source>
<context value="s"/>
<element value="coding"/>
<variable value="sc"/>
</source>
<target>
<transform value="copy"/>
<parameter>
<valueId value="tgt"/>
</parameter>
</target>
<rule>
<name value="code"/>
<source>
<context value="sc"/>
<element value="code"/>
<variable value="a"/>
</source>
<target>
<context value="tgt"/>
<element value="measurement_type_concept_id"/>
<transform value="translate"/>
<parameter>
<valueId value="a"/>
</parameter>
<parameter>
<valueString
value="http://hl7.org/fhir/uv/omop/ConceptMap/BloodPressureCodes"/>
</parameter>
<parameter>
<valueString value="code"/>
</parameter>
</target>
</rule>
</rule>
</rule>
<rule>
<name value="effectiveDateTime"/>
<source>
<context value="src"/>
<type value="dateTime"/>
<element value="effective"/>
<variable value="edt"/>
</source>
<target>
<context value="tgt"/>
<element value="measurement_datetime"/>
<transform value="copy"/>
<parameter>
<valueId value="edt"/>
</parameter>
</target>
<target>
<context value="tgt"/>
<element value="measurement_date"/>
<transform value="cast"/>
<parameter>
<valueId value="edt"/>
</parameter>
<parameter>
<valueString value="date"/>
</parameter>
</target>
</rule>
<rule>
<name value="effectivePeriod"/>
<source>
<context value="src"/>
<type value="Period"/>
<element value="effective"/>
<variable value="s"/>
</source>
<target>
<transform value="copy"/>
<parameter>
<valueId value="tgt"/>
</parameter>
</target>
<rule>
<name value="start"/>
<source>
<context value="s"/>
<element value="start"/>
<variable value="eps"/>
</source>
<target>
<context value="tgt"/>
<element value="measurement_datetime"/>
<transform value="cast"/>
<parameter>
<valueId value="eps"/>
</parameter>
<parameter>
<valueString value="dateTime"/>
</parameter>
</target>
<target>
<context value="tgt"/>
<element value="measurement_date"/>
<transform value="cast"/>
<parameter>
<valueId value="eps"/>
</parameter>
<parameter>
<valueString value="date"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="issued"/>
<source>
<context value="src"/>
<element value="issued"/>
<variable value="s"/>
<condition value="(src.issued.toDate != src.effectiveDateTime)"/>
</source>
<target>
<context value="tgt"/>
<element value="measurement_source_value"/>
<transform value="cast"/>
<parameter>
<valueId value="s"/>
</parameter>
<parameter>
<valueString value="string"/>
</parameter>
</target>
</rule>
</group>
</StructureMap>
IG © 2023+ HL7 International / Biomedical Research and Regulation.
Package hl7.fhir.uv.omop#1.0.0 based on FHIR 5.0.0.
Generated
2026-04-27
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