FHIR to OMOP FHIR IG
2.0.0-ballot - STU 1 Ballot
FHIR to OMOP FHIR IG
2.0.0-ballot - STU 1 Ballot
FHIR to OMOP FHIR IG, published by HL7 International / Biomedical Research and Regulation. This guide is not an authorized publication; it is the continuous build for version 2.0.0-ballot built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-omop-ig/ and changes regularly. See the Directory of published versions
| Page standards status: Trial-use | Maturity Level: 2 |
@prefix fhir: <http://hl7.org/fhir/> . @prefix owl: <http://www.w3.org/2002/07/owl#> . @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . # - resource ------------------------------------------------------------------- <http://hl7.org/fhir/StructureMap/AllergyMap> a fhir:StructureMap ; fhir:nodeRole fhir:treeRoot ; fhir:id [ fhir:v "AllergyMap"] ; # fhir:language [ fhir:v "en"] ; # fhir:text [ fhir:status [ fhir:v "generated" ] ; fhir:div [ fhir:v "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: StructureMap AllergyMap</b></p><a name=\"AllergyMap\"> </a><a name=\"hcAllergyMap\"> </a><pre class=\"fml\">#xD;\n<span style=\"color: #cc00cc\">/// <b>url</b> = </span><span style=\"color: blue\">'http://hl7.org/fhir/uv/omop/StructureMap/AllergyMap'</span>#xD;\n<span style=\"color: #cc00cc\">/// <b>name</b> = </span><span style=\"color: blue\">'AllergyMap'</span>#xD;\n<span style=\"color: #cc00cc\">/// <b>title</b> = </span><span style=\"color: blue\">'Mapping Allergy resource to Observation OMOP Domain'</span>#xD;\n<span style=\"color: #cc00cc\">/// <b>status</b> = </span><span style=\"color: blue\">'active'</span>#xD;\n<span style=\"color: #cc00cc\">/// <b>description</b> = </span><span style=\"color: blue\">'This mapping maps FHIR AllergyIntolerance instances to OMOP Observation Table objects.'</span>#xD;\n#xD;\n<b>uses</b><span style=\"color: navy\"> \"</span><a href=\"http://hl7.org/fhir/R5/allergyintolerance.html\" title=\"AllergyIntolerance\">http://hl7.org/fhir/StructureDefinition/AllergyIntolerance</a><span style=\"color: navy\">\" </span><b>alias </b>Allergy <b>as </b><b>source</b>#xD;\n<b>uses</b><span style=\"color: navy\"> \"</span><a href=\"StructureDefinition-Observation.html\" title=\"Observation OMOP Table\">http://hl7.org/fhir/uv/omop/StructureDefinition/Observation</a><span style=\"color: navy\">\" </span><b>alias </b>ObservationTable <b>as </b><b>target</b>#xD;\n#xD;\n<b>group </b>Allergy<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>Allergy, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\"> : </span>ObservationTable<span style=\"color: navy\">)</span><span style=\"color: navy\"> {#xD;\n</span> src<b> where </b><span style=\"color: navy\">(</span>src.recordedDate.empty().not() | src.onset.empty().not()<span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {#xD;\n</span> <span style=\"color: navy\">// </span><span style=\"color: green\">OMOP Observation ID would be a map from FHIR ID to an external key</span>#xD;\n src<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span>tgt<b> then</b><span style=\"color: navy\"> {#xD;\n</span> s.id<b> as </b><span style=\"color: maroon\">id</span><span style=\"color: navy\"><b> -> </b></span>tgt.observation_id = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">id</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'integer'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>#xD;\n src<b> as </b><span style=\"color: maroon\">s</span><b> where </b><span style=\"color: navy\">(</span>src.id.empty()<span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {#xD;\n</span> s.identifier<b> as </b><span style=\"color: maroon\">i</span><span style=\"color: navy\"><b> -> </b></span>tgt<b> then</b><span style=\"color: navy\"> {#xD;\n</span> i.value<b> as </b><span style=\"color: maroon\">id</span><span style=\"color: navy\"><b> -> </b></span>tgt.observation_id = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">id</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'integer'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span> <i>\"allergyIdFromIdentifier\"</i><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span> <i>\"allergyId\"</i><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">// </span><span style=\"color: green\">OMOP Person ID would be a map from the FHIR Allergy Patient reference to an external key</span>#xD;\n src.patient<b> as </b><span style=\"color: maroon\">subject</span><span style=\"color: navy\"><b> -> </b></span>tgt<b> then</b><span style=\"color: navy\"> {#xD;\n</span> subject.reference<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span>tgt.person_id = <span style=\"color: navy\">(</span>%s.substring(%s.indexOf('/') + 1)<span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">// </span><span style=\"color: green\">OMOP Visit Occurrence ID would be a map from the FHIR Allergy Encounter reference to an external key</span>#xD;\n src.encounter<b> as </b><span style=\"color: maroon\">encounter</span><span style=\"color: navy\"><b> -> </b></span>tgt<b> then</b><span style=\"color: navy\"> {#xD;\n</span> encounter.reference<b> as </b><span style=\"color: maroon\">e</span><span style=\"color: navy\"><b> -> </b></span>tgt.visit_occurrence_id = <span style=\"color: navy\">(</span>%e.substring(%e.indexOf('/') + 1)<span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n src.type<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span>tgt<b> then</b><span style=\"color: navy\"> {#xD;\n</span> s.coding<b> as </b><span style=\"color: maroon\">sc</span><span style=\"color: navy\"><b> -> </b></span>tgt<b> then</b><span style=\"color: navy\"> {#xD;\n</span> sc.code<b> as </b><span style=\"color: maroon\">code</span><b> where </b><span style=\"color: navy\">(</span>code = 'allergy'<span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {#xD;\n</span> src.category<b> as </b><span style=\"color: maroon\">category</span><span style=\"color: navy\"><b> -> </b></span>tgt.observation_concept_id = <b>translate</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">category</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'http://hl7.org/fhir/uv/omop/ConceptMap/AllergyType'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'code'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n sc.code<b> as </b><span style=\"color: maroon\">code</span><b> where </b><span style=\"color: navy\">(</span>code = 'intolerance'<span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {#xD;\n</span> src.category<b> as </b><span style=\"color: maroon\">category</span><span style=\"color: navy\"><b> -> </b></span>tgt.observation_concept_id = <b>translate</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">category</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'http://hl7.org/fhir/uv/omop/ConceptMap/IntoleranceType'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'code'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n src.code<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span>tgt<b> then</b><span style=\"color: navy\"> {#xD;\n</span> s.coding<b> as </b><span style=\"color: maroon\">sc</span><span style=\"color: navy\"><b> -> </b></span>tgt<b> then</b><span style=\"color: navy\"> {#xD;\n</span> sc.system<b> as </b><span style=\"color: maroon\">s</span><b> where </b><span style=\"color: navy\">(</span>s = 'http://snomed.info/sct'<span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {#xD;\n</span> sc.code<b> as </b><span style=\"color: maroon\">code</span><span style=\"color: navy\"><b> -> </b></span> tgt.value_as_concept_id = <b>translate</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">code</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'http://hl7.org/fhir/uv/omop/ConceptMap/AllergySubstanceType'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'code'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> tgt.value_source_value = <span style=\"color: maroon\">code</span><span style=\"color: navy\">;</span>#xD;\n sc.display<b> as </b><span style=\"color: maroon\">display</span><span style=\"color: navy\"><b> -> </b></span>tgt.value_as_string = <span style=\"color: maroon\">display</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n src.recordedDate<span style=\"color: navy\"> : </span>dateTime<b> as </b><span style=\"color: maroon\">osd</span><span style=\"color: navy\"><b> -> </b></span> tgt.observation_date = <span style=\"color: navy\">(</span>src.recordedDate.toString().substring(0, 10)<span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> tgt.observation_datetime = <span style=\"color: maroon\">osd</span><span style=\"color: navy\">;</span>#xD;\n src<b> where </b><span style=\"color: navy\">(</span>src.recordedDate.empty()<span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {#xD;\n</span> src.onset<span style=\"color: navy\"> : </span>dateTime<b> as </b><span style=\"color: maroon\">osd</span><span style=\"color: navy\"><b> -> </b></span> tgt.observation_date = <span style=\"color: navy\">(</span>src.onset.toString().substring(0, 10)<span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> tgt.observation_datetime = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">osd</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'dateTime'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span> <i>\"allergyDateTime\"</i><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span> <i>\"allergyMap\"</i><span style=\"color: navy\">;</span>#xD;\n<span style=\"color: navy\">}#xD;\n#xD;\n</span></pre></div>"^^rdf:XMLLiteral ] ] ; # fhir:extension ( [ fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg"^^xsd:anyURI ] ; fhir:value [ a fhir:code ; fhir:v "brr" ] ] [ fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm"^^xsd:anyURI ] ; fhir:value [ a fhir:integer ; fhir:v 2 ; fhir:extension ( [ fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom"^^xsd:anyURI ] ; fhir:value [ a fhir:canonical ; fhir:v "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"^^xsd:anyURI ; fhir:link <http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop> ] ] ) ] ] [ fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status"^^xsd:anyURI ] ; fhir:value [ a fhir:code ; fhir:v "trial-use" ; fhir:extension ( [ fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom"^^xsd:anyURI ] ; fhir:value [ a fhir:canonical ; fhir:v "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"^^xsd:anyURI ; fhir:link <http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop> ] ] ) ] ] ) ; # fhir:url [ fhir:v "http://hl7.org/fhir/uv/omop/StructureMap/AllergyMap"^^xsd:anyURI] ; # fhir:identifier ( [ fhir:system [ fhir:v "urn:ietf:rfc:3986"^^xsd:anyURI ] ; fhir:value [ fhir:v "urn:oid:2.16.840.1.113883.4.642.40.77.43.1" ] ] ) ; # fhir:version [ fhir:v "2.0.0-ballot"] ; # fhir:name [ fhir:v "AllergyMap"] ; # fhir:title [ fhir:v "Mapping Allergy resource to Observation OMOP Domain"] ; # fhir:status [ fhir:v "active"] ; # fhir:date [ fhir:v "2026-08-14T16:09:20+00:00"^^xsd:dateTime] ; # fhir:publisher [ fhir:v "HL7 International / Biomedical Research and Regulation"] ; # fhir:contact ( [ fhir:name [ fhir:v "HL7 International / Biomedical Research and Regulation" ] ; fhir:telecom ( [ fhir:system [ fhir:v "url" ] ; fhir:value [ fhir:v "http://www.hl7.org/Special/committees/rcrim" ] ] ) ] ) ; # fhir:description [ fhir:v "This mapping maps FHIR AllergyIntolerance instances to OMOP Observation Table objects."] ; # fhir:jurisdiction ( [ fhir:coding ( [ fhir:system [ fhir:v "http://unstats.un.org/unsd/methods/m49/m49.htm"^^xsd:anyURI ] ; fhir:code [ fhir:v "001" ] ; fhir:display [ fhir:v "World" ] ] ) ] ) ; # fhir:structure ( [ fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/AllergyIntolerance"^^xsd:anyURI ; fhir:link <http://hl7.org/fhir/StructureDefinition/AllergyIntolerance> ] ; fhir:mode [ fhir:v "source" ] ; fhir:alias [ fhir:v "Allergy" ] ] [ fhir:url [ fhir:v "http://hl7.org/fhir/uv/omop/StructureDefinition/Observation"^^xsd:anyURI ; fhir:link <http://hl7.org/fhir/uv/omop/StructureDefinition/Observation> ] ; fhir:mode [ fhir:v "target" ] ; fhir:alias [ fhir:v "ObservationTable" ] ] ) ; # fhir:group ( [ fhir:name [ fhir:v "Allergy" ] ; fhir:input ( [ fhir:name [ fhir:v "src" ] ; fhir:type [ fhir:v "Allergy" ] ; fhir:mode [ fhir:v "source" ] ] [ fhir:name [ fhir:v "tgt" ] ; fhir:type [ fhir:v "ObservationTable" ] ; fhir:mode [ fhir:v "target" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "allergyMap" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:condition [ fhir:v "src.recordedDate.empty().not() | src.onset.empty().not()" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "allergyId" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:variable [ fhir:v "s" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "id" ] ; fhir:source ( [ fhir:context [ fhir:v "s" ] ; fhir:element [ fhir:v "id" ] ; fhir:variable [ fhir:v "id" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:element [ fhir:v "observation_id" ] ; fhir:transform [ fhir:v "cast" ] ; fhir:parameter ( [ fhir:value [ a fhir:id ; fhir:v "id" ] ] [ fhir:value [ a fhir:string ; fhir:v "integer" ] ] ) ] ) ] [ fhir:name [ fhir:v "allergyIdFromIdentifier" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:variable [ fhir:v "s" ] ; fhir:condition [ fhir:v "src.id.empty()" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "identifier" ] ; fhir:source ( [ fhir:context [ fhir:v "s" ] ; fhir:element [ fhir:v "identifier" ] ; fhir:variable [ fhir:v "i" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "value" ] ; fhir:source ( [ fhir:context [ fhir:v "i" ] ; fhir:element [ fhir:v "value" ] ; fhir:variable [ fhir:v "id" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:element [ fhir:v "observation_id" ] ; fhir:transform [ fhir:v "cast" ] ; fhir:parameter ( [ fhir:value [ a fhir:id ; fhir:v "id" ] ] [ fhir:value [ a fhir:string ; fhir:v "integer" ] ] ) ] ) ] ) ] ) ] ) ; fhir:documentation [ fhir:v "OMOP Observation ID would be a map from FHIR ID to an external key" ] ] [ fhir:name [ fhir:v "patient" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:element [ fhir:v "patient" ] ; fhir:variable [ fhir:v "subject" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "reference" ] ; fhir:source ( [ fhir:context [ fhir:v "subject" ] ; fhir:element [ fhir:v "reference" ] ; fhir:variable [ fhir:v "s" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:element [ fhir:v "person_id" ] ; fhir:transform [ fhir:v "evaluate" ] ; fhir:parameter ( [ fhir:value [ a fhir:string ; fhir:v "%s.substring(%s.indexOf('/') + 1)" ] ] ) ] ) ] ) ; fhir:documentation [ fhir:v "OMOP Person ID would be a map from the FHIR Allergy Patient reference to an external key" ] ] [ fhir:name [ fhir:v "encounter" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:element [ fhir:v "encounter" ] ; fhir:variable [ fhir:v "encounter" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "reference" ] ; fhir:source ( [ fhir:context [ fhir:v "encounter" ] ; fhir:element [ fhir:v "reference" ] ; fhir:variable [ fhir:v "e" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:element [ fhir:v "visit_occurrence_id" ] ; fhir:transform [ fhir:v "evaluate" ] ; fhir:parameter ( [ fhir:value [ a fhir:string ; fhir:v "%e.substring(%e.indexOf('/') + 1)" ] ] ) ] ) ] ) ; fhir:documentation [ fhir:v "OMOP Visit Occurrence ID would be a map from the FHIR Allergy Encounter reference to an external key" ] ] [ fhir:name [ fhir:v "type" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:element [ fhir:v "type" ] ; fhir:variable [ fhir:v "s" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "coding" ] ; fhir:source ( [ fhir:context [ fhir:v "s" ] ; fhir:element [ fhir:v "coding" ] ; fhir:variable [ fhir:v "sc" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "code" ] ; fhir:source ( [ fhir:context [ fhir:v "sc" ] ; fhir:element [ fhir:v "code" ] ; fhir:variable [ fhir:v "code" ] ; fhir:condition [ fhir:v "code = 'allergy'" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "category" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:element [ fhir:v "category" ] ; fhir:variable [ fhir:v "category" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:element [ fhir:v "observation_concept_id" ] ; fhir:transform [ fhir:v "translate" ] ; fhir:parameter ( [ fhir:value [ a fhir:id ; fhir:v "category" ] ] [ fhir:value [ a fhir:string ; fhir:v "http://hl7.org/fhir/uv/omop/ConceptMap/AllergyType" ] ] [ fhir:value [ a fhir:string ; fhir:v "code" ] ] ) ] ) ] ) ] [ fhir:name [ fhir:v "code" ] ; fhir:source ( [ fhir:context [ fhir:v "sc" ] ; fhir:element [ fhir:v "code" ] ; fhir:variable [ fhir:v "code" ] ; fhir:condition [ fhir:v "code = 'intolerance'" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "category" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:element [ fhir:v "category" ] ; fhir:variable [ fhir:v "category" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:element [ fhir:v "observation_concept_id" ] ; fhir:transform [ fhir:v "translate" ] ; fhir:parameter ( [ fhir:value [ a fhir:id ; fhir:v "category" ] ] [ fhir:value [ a fhir:string ; fhir:v "http://hl7.org/fhir/uv/omop/ConceptMap/IntoleranceType" ] ] [ fhir:value [ a fhir:string ; fhir:v "code" ] ] ) ] ) ] ) ] ) ] ) ] [ fhir:name [ fhir:v "code" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:element [ fhir:v "code" ] ; fhir:variable [ fhir:v "s" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "coding" ] ; fhir:source ( [ fhir:context [ fhir:v "s" ] ; fhir:element [ fhir:v "coding" ] ; fhir:variable [ fhir:v "sc" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "system" ] ; fhir:source ( [ fhir:context [ fhir:v "sc" ] ; fhir:element [ fhir:v "system" ] ; fhir:variable [ fhir:v "s" ] ; fhir:condition [ fhir:v "s = 'http://snomed.info/sct'" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "code" ] ; fhir:source ( [ fhir:context [ fhir:v "sc" ] ; fhir:element [ fhir:v "code" ] ; fhir:variable [ fhir:v "code" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:element [ fhir:v "value_as_concept_id" ] ; fhir:transform [ fhir:v "translate" ] ; fhir:parameter ( [ fhir:value [ a fhir:id ; fhir:v "code" ] ] [ fhir:value [ a fhir:string ; fhir:v "http://hl7.org/fhir/uv/omop/ConceptMap/AllergySubstanceType" ] ] [ fhir:value [ a fhir:string ; fhir:v "code" ] ] ) ] [ fhir:context [ fhir:v "tgt" ] ; fhir:element [ fhir:v "value_source_value" ] ; fhir:transform [ fhir:v "copy" ] ; fhir:parameter ( [ fhir:value [ a fhir:id ; fhir:v "code" ] ] ) ] ) ] [ fhir:name [ fhir:v "display" ] ; fhir:source ( [ fhir:context [ fhir:v "sc" ] ; fhir:element [ fhir:v "display" ] ; fhir:variable [ fhir:v "display" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:element [ fhir:v "value_as_string" ] ; fhir:transform [ fhir:v "copy" ] ; fhir:parameter ( [ fhir:value [ a fhir:id ; fhir:v "display" ] ] ) ] ) ] ) ] ) ] ) ] [ fhir:name [ fhir:v "recordedDateDateTime" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:type [ fhir:v "dateTime" ] ; fhir:element [ fhir:v "recordedDate" ] ; fhir:variable [ fhir:v "osd" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:element [ fhir:v "observation_date" ] ; fhir:transform [ fhir:v "evaluate" ] ; fhir:parameter ( [ fhir:value [ a fhir:string ; fhir:v "src.recordedDate.toString().substring(0, 10)" ] ] ) ] [ fhir:context [ fhir:v "tgt" ] ; fhir:element [ fhir:v "observation_datetime" ] ; fhir:transform [ fhir:v "copy" ] ; fhir:parameter ( [ fhir:value [ a fhir:id ; fhir:v "osd" ] ] ) ] ) ] [ fhir:name [ fhir:v "allergyDateTime" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:condition [ fhir:v "src.recordedDate.empty()" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "onsetDateTime" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:type [ fhir:v "dateTime" ] ; fhir:element [ fhir:v "onset" ] ; fhir:variable [ fhir:v "osd" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:element [ fhir:v "observation_date" ] ; fhir:transform [ fhir:v "evaluate" ] ; fhir:parameter ( [ fhir:value [ a fhir:string ; fhir:v "src.onset.toString().substring(0, 10)" ] ] ) ] [ fhir:context [ fhir:v "tgt" ] ; fhir:element [ fhir:v "observation_datetime" ] ; fhir:transform [ fhir:v "cast" ] ; fhir:parameter ( [ fhir:value [ a fhir:id ; fhir:v "osd" ] ] [ fhir:value [ a fhir:string ; fhir:v "dateTime" ] ] ) ] ) ] ) ] ) ] ) ] ) . #
IG © 2023+ HL7 International / Biomedical Research and Regulation.
Package hl7.fhir.uv.omop#2.0.0-ballot based on FHIR 5.0.0.
Generated
2026-08-14
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