FHIR to OMOP FHIR IG
1.0.0 - INFORMATIVE 1
FHIR to OMOP FHIR IG
1.0.0 - INFORMATIVE 1
FHIR to OMOP FHIR IG, published by HL7 International / Biomedical Research and Regulation. This guide is not an authorized publication; it is the continuous build for version 1.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-omop-ig/ and changes regularly. See the Directory of published versions
| Page standards status: Informative | Maturity Level: 1 |
{
"resourceType" : "StructureMap",
"id" : "SimpleVitalSignsMap",
"language" : "en",
"text" : {
"status" : "generated",
"div" : "<div xml:lang=\"en\" xmlns=\"http://www.w3.org/1999/xhtml\" lang=\"en\"><p class=\"res-header-id\"><b>Generated Narrative: StructureMap SimpleVitalSignsMap</b></p><a name=\"SimpleVitalSignsMap\"> </a><a name=\"hcSimpleVitalSignsMap\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Language: en</p></div><pre class=\"fml\">\r\n<span style=\"color: #cc00cc\">/// <b>url</b> = </span><span style=\"color: blue\">'http://hl7.org/fhir/uv/omop/StructureMap/SimpleVitalSignsMap'</span>\r\n<span style=\"color: #cc00cc\">/// <b>name</b> = </span><span style=\"color: blue\">'SimpleVitalSignsMap'</span>\r\n<span style=\"color: #cc00cc\">/// <b>title</b> = </span><span style=\"color: blue\">'Mapping Vital Ssigns resource to Measurement OMOP Domain'</span>\r\n<span style=\"color: #cc00cc\">/// <b>status</b> = </span><span style=\"color: blue\">'draft'</span>\r\n\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"http://hl7.org/fhir/R5/vitalsigns.html\" title=\"Vital Signs Profile\">http://hl7.org/fhir/StructureDefinition/vitalsigns</a><span style=\"color: navy\">" </span><b>alias </b>VitalSigns <b>as </b><b>source</b>\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"StructureDefinition-Measurement.html\" title=\"Measurement OMOP Table\">http://hl7.org/fhir/uv/omop/StructureDefinition/Measurement</a><span style=\"color: navy\">" </span><b>alias </b>MeasureTable <b>as </b><b>target</b>\r\n\r\n<b>group </b>Measures<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>VitalSigns, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\"> : </span>MeasureTable<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> src<b> where </b>('vital-signs').supersetOf(VitalSigns.category.coding.code)<b> then</b><span style=\"color: navy\"> {\r\n</span> src.code<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {\r\n</span> s.coding<b> as </b><span style=\"color: maroon\">sc</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {\r\n</span> sc.system<b> where </b>('http://loinc.org')<b> then</b><span style=\"color: navy\"> {\r\n</span> sc.code<b> as </b><span style=\"color: maroon\">a</span><b> where </b>((a in ('85354-9' | '8480-6' | '8462-4' | '8478-0')).not())<span style=\"color: navy\"><b> -> </b></span>tgt.measurement_type_concept_id = <b>translate</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">a</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'http://hl7.org/fhir/uv/omop/ConceptMap/VitalSignsCodes'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'code'</span><span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {\r\n</span> sc.display<b> as </b><span style=\"color: maroon\">display</span><span style=\"color: navy\"><b> -> </b></span>tgt.measurement_concept_id = <span style=\"color: maroon\">display</span><span style=\"color: navy\">;</span>\r\n src.effective<span style=\"color: navy\"> : </span>dateTime<b> as </b><span style=\"color: maroon\">edt</span><span style=\"color: navy\"><b> -> </b></span> tgt.measurement_datetime = <span style=\"color: maroon\">edt</span><span style=\"color: navy\">, </span> tgt.measurement_date = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">edt</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'date'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n src.effective<span style=\"color: navy\"> : </span>Period<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {\r\n</span> s.start<b> as </b><span style=\"color: maroon\">eps</span><span style=\"color: navy\"><b> -> </b></span> tgt.measurement_datetime = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">eps</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'dateTime'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> tgt.measurement_date = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">eps</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'date'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n src.issued<b> as </b><span style=\"color: maroon\">s</span><b> where </b>(src.issued.toDate != src.effectiveDateTime)<span style=\"color: navy\"><b> -> </b></span>tgt.measurement_source_value = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">s</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'string'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n src.value<span style=\"color: navy\"> : </span>Quantity<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {\r\n</span> s.value<b> as </b><span style=\"color: maroon\">a</span><span style=\"color: navy\"><b> -> </b></span>tgt.value_as_number = <span style=\"color: maroon\">a</span><span style=\"color: navy\">;</span>\r\n s.unit<b> as </b><span style=\"color: maroon\">b</span><span style=\"color: navy\"><b> -> </b></span>tgt.unit_concept_id = <span style=\"color: maroon\">b</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n src.value<span style=\"color: navy\"> : </span>CodeableConcept<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {\r\n</span> s.coding<b> as </b><span style=\"color: maroon\">sc</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {\r\n</span> sc.code<b> as </b><span style=\"color: maroon\">code</span><span style=\"color: navy\"><b> -> </b></span>tgt.value_as_concept_id = <span style=\"color: maroon\">code</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n src.value<span style=\"color: navy\"> : </span>string<b> as </b><span style=\"color: maroon\">b</span><span style=\"color: navy\"><b> -> </b></span>tgt.value_source_value = <span style=\"color: maroon\">b</span><span style=\"color: navy\">;</span>\r\n src.interpretation<b> as </b><span style=\"color: maroon\">c</span><span style=\"color: navy\"><b> -> </b></span>tgt.value_as_concept_id = <span style=\"color: maroon\">c</span><span style=\"color: navy\">;</span>\r\n src.note<b> as </b><span style=\"color: maroon\">d</span><span style=\"color: navy\"><b> -> </b></span>tgt.measurement_source_value = <span style=\"color: maroon\">d</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"OnlyMeasures"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span></pre></div>"
},
"extension" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
"valueCode" : "brr"
},
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
"valueInteger" : 1,
"_valueInteger" : {
"extension" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
"valueCanonical" : "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"
}
]
}
},
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
"valueCode" : "informative",
"_valueCode" : {
"extension" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
"valueCanonical" : "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"
}
]
}
}
],
"url" : "http://hl7.org/fhir/uv/omop/StructureMap/SimpleVitalSignsMap",
"version" : "1.0.0",
"name" : "SimpleVitalSignsMap",
"title" : "Mapping Vital Ssigns resource to Measurement OMOP Domain",
"status" : "draft",
"date" : "2026-04-02T22:51:15+00:00",
"publisher" : "HL7 International / Biomedical Research and Regulation",
"contact" : [
{
"name" : "HL7 International / Biomedical Research and Regulation",
"telecom" : [
{
"system" : "url",
"value" : "http://www.hl7.org/Special/committees/rcrim"
}
]
}
],
"description" : "This mapping maps simple FHIR Vital Signs instances that are considered measurements to OMOP Measurement Table objects.",
"jurisdiction" : [
{
"coding" : [
{
"system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
"code" : "001",
"display" : "World"
}
]
}
],
"structure" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/vitalsigns",
"mode" : "source",
"alias" : "VitalSigns"
},
{
"url" : "http://hl7.org/fhir/uv/omop/StructureDefinition/Measurement",
"mode" : "target",
"alias" : "MeasureTable"
}
],
"group" : [
{
"name" : "Measures",
"input" : [
{
"name" : "src",
"type" : "VitalSigns",
"mode" : "source"
},
{
"name" : "tgt",
"type" : "MeasureTable",
"mode" : "target"
}
],
"rule" : [
{
"name" : "OnlyMeasures",
"source" : [
{
"context" : "src",
"condition" : "('vital-signs').supersetOf(VitalSigns.category.coding.code)"
}
],
"rule" : [
{
"name" : "code",
"source" : [
{
"context" : "src",
"element" : "code",
"variable" : "s"
}
],
"target" : [
{
"transform" : "copy",
"parameter" : [
{
"valueId" : "tgt"
}
]
}
],
"rule" : [
{
"name" : "coding",
"source" : [
{
"context" : "s",
"element" : "coding",
"variable" : "sc"
}
],
"target" : [
{
"transform" : "copy",
"parameter" : [
{
"valueId" : "tgt"
}
]
}
],
"rule" : [
{
"name" : "system",
"source" : [
{
"context" : "sc",
"element" : "system",
"condition" : "('http://loinc.org')"
}
],
"rule" : [
{
"name" : "code",
"source" : [
{
"context" : "sc",
"element" : "code",
"variable" : "a",
"condition" : "((a in ('85354-9' | '8480-6' | '8462-4' | '8478-0')).not())"
}
],
"target" : [
{
"context" : "tgt",
"element" : "measurement_type_concept_id",
"transform" : "translate",
"parameter" : [
{
"valueId" : "a"
},
{
"valueString" : "http://hl7.org/fhir/uv/omop/ConceptMap/VitalSignsCodes"
},
{
"valueString" : "code"
}
]
}
],
"rule" : [
{
"name" : "display",
"source" : [
{
"context" : "sc",
"element" : "display",
"variable" : "display"
}
],
"target" : [
{
"context" : "tgt",
"element" : "measurement_concept_id",
"transform" : "copy",
"parameter" : [
{
"valueId" : "display"
}
]
}
]
},
{
"name" : "effectiveDateTime",
"source" : [
{
"context" : "src",
"type" : "dateTime",
"element" : "effective",
"variable" : "edt"
}
],
"target" : [
{
"context" : "tgt",
"element" : "measurement_datetime",
"transform" : "copy",
"parameter" : [
{
"valueId" : "edt"
}
]
},
{
"context" : "tgt",
"element" : "measurement_date",
"transform" : "cast",
"parameter" : [
{
"valueId" : "edt"
},
{
"valueString" : "date"
}
]
}
]
},
{
"name" : "effectivePeriod",
"source" : [
{
"context" : "src",
"type" : "Period",
"element" : "effective",
"variable" : "s"
}
],
"target" : [
{
"transform" : "copy",
"parameter" : [
{
"valueId" : "tgt"
}
]
}
],
"rule" : [
{
"name" : "start",
"source" : [
{
"context" : "s",
"element" : "start",
"variable" : "eps"
}
],
"target" : [
{
"context" : "tgt",
"element" : "measurement_datetime",
"transform" : "cast",
"parameter" : [
{
"valueId" : "eps"
},
{
"valueString" : "dateTime"
}
]
},
{
"context" : "tgt",
"element" : "measurement_date",
"transform" : "cast",
"parameter" : [
{
"valueId" : "eps"
},
{
"valueString" : "date"
}
]
}
]
}
]
},
{
"name" : "issued",
"source" : [
{
"context" : "src",
"element" : "issued",
"variable" : "s",
"condition" : "(src.issued.toDate != src.effectiveDateTime)"
}
],
"target" : [
{
"context" : "tgt",
"element" : "measurement_source_value",
"transform" : "cast",
"parameter" : [
{
"valueId" : "s"
},
{
"valueString" : "string"
}
]
}
]
},
{
"name" : "valueQuantity",
"source" : [
{
"context" : "src",
"type" : "Quantity",
"element" : "value",
"variable" : "s"
}
],
"target" : [
{
"transform" : "copy",
"parameter" : [
{
"valueId" : "tgt"
}
]
}
],
"rule" : [
{
"name" : "value",
"source" : [
{
"context" : "s",
"element" : "value",
"variable" : "a"
}
],
"target" : [
{
"context" : "tgt",
"element" : "value_as_number",
"transform" : "copy",
"parameter" : [
{
"valueId" : "a"
}
]
}
]
},
{
"name" : "unit",
"source" : [
{
"context" : "s",
"element" : "unit",
"variable" : "b"
}
],
"target" : [
{
"context" : "tgt",
"element" : "unit_concept_id",
"transform" : "copy",
"parameter" : [
{
"valueId" : "b"
}
]
}
]
}
]
},
{
"name" : "valueCodeableConcept",
"source" : [
{
"context" : "src",
"type" : "CodeableConcept",
"element" : "value",
"variable" : "s"
}
],
"target" : [
{
"transform" : "copy",
"parameter" : [
{
"valueId" : "tgt"
}
]
}
],
"rule" : [
{
"name" : "coding",
"source" : [
{
"context" : "s",
"element" : "coding",
"variable" : "sc"
}
],
"target" : [
{
"transform" : "copy",
"parameter" : [
{
"valueId" : "tgt"
}
]
}
],
"rule" : [
{
"name" : "code",
"source" : [
{
"context" : "sc",
"element" : "code",
"variable" : "code"
}
],
"target" : [
{
"context" : "tgt",
"element" : "value_as_concept_id",
"transform" : "copy",
"parameter" : [
{
"valueId" : "code"
}
]
}
]
}
]
}
]
},
{
"name" : "valueString",
"source" : [
{
"context" : "src",
"type" : "string",
"element" : "value",
"variable" : "b"
}
],
"target" : [
{
"context" : "tgt",
"element" : "value_source_value",
"transform" : "copy",
"parameter" : [
{
"valueId" : "b"
}
]
}
]
},
{
"name" : "interpretation",
"source" : [
{
"context" : "src",
"element" : "interpretation",
"variable" : "c"
}
],
"target" : [
{
"context" : "tgt",
"element" : "value_as_concept_id",
"transform" : "copy",
"parameter" : [
{
"valueId" : "c"
}
]
}
]
},
{
"name" : "note",
"source" : [
{
"context" : "src",
"element" : "note",
"variable" : "d"
}
],
"target" : [
{
"context" : "tgt",
"element" : "measurement_source_value",
"transform" : "copy",
"parameter" : [
{
"valueId" : "d"
}
]
}
]
}
]
}
]
}
]
}
]
}
]
}
]
}
]
}
IG © 2023+ HL7 International / Biomedical Research and Regulation.
Package hl7.fhir.uv.omop#1.0.0 based on FHIR 5.0.0.
Generated
2026-04-02
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