FHIR to OMOP FHIR IG
1.0.0 - INFORMATIVE 1
FHIR to OMOP FHIR IG
1.0.0 - INFORMATIVE 1
FHIR to OMOP FHIR IG, published by HL7 International / Biomedical Research and Regulation. This guide is not an authorized publication; it is the continuous build for version 1.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-omop-ig/ and changes regularly. See the Directory of published versions
| Page standards status: Informative | Maturity Level: 2 |
{
"resourceType" : "StructureMap",
"id" : "BloodPressureVitalSignsMap",
"language" : "en",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: StructureMap BloodPressureVitalSignsMap</b></p><a name=\"BloodPressureVitalSignsMap\"> </a><a name=\"hcBloodPressureVitalSignsMap\"> </a><pre class=\"fml\">\r\n<span style=\"color: #cc00cc\">/// <b>url</b> = </span><span style=\"color: blue\">'http://hl7.org/fhir/uv/omop/StructureMap/BloodPressureVitalSignsMap'</span>\r\n<span style=\"color: #cc00cc\">/// <b>name</b> = </span><span style=\"color: blue\">'BloodPressureVitalSignsMap'</span>\r\n<span style=\"color: #cc00cc\">/// <b>title</b> = </span><span style=\"color: blue\">'Mapping Blood Pressure Vital Signs resource to Measurement OMOP Domain'</span>\r\n<span style=\"color: #cc00cc\">/// <b>status</b> = </span><span style=\"color: blue\">'draft'</span>\r\n\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"http://hl7.org/fhir/R5/bp.html\" title=\"Observation Blood Pressure Profile\">http://hl7.org/fhir/StructureDefinition/bp</a><span style=\"color: navy\">" </span><b>alias </b>BloodPressure <b>as </b><b>source</b>\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"http://hl7.org/fhir/R5/bundle.html\" title=\"Bundle\">http://hl7.org/fhir/StructureDefinition/Bundle</a><span style=\"color: navy\">" </span><b>as </b><b>target</b>\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"StructureDefinition-Measurement.html\" title=\"Measurement OMOP Table\">http://hl7.org/fhir/uv/omop/StructureDefinition/Measurement</a><span style=\"color: navy\">" </span><b>alias </b>Measurement <b>as </b><b>target</b> <span style=\"color: navy\">// </span><span style=\"color: green\">make the bundle</span>\r\n\r\n<b>group </b>bpMap<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>BloodPressure, <b>target</b> <span style=\"color: maroon\">bundle</span><span style=\"color: navy\"> : </span>Bundle<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>bundle.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>"bundleid"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>bundle.type = <span style=\"color: blue\">'collection'</span> <i>"bundletype"</i><span style=\"color: navy\">;</span>\r\n src<b> as </b><span style=\"color: maroon\">parent</span><span style=\"color: navy\"><b> -> </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><b> then</b><span style=\"color: navy\"> {\r\n</span> parent<span style=\"color: navy\"><b> -> </b></span>entry.fullUrl = <span style=\"color: blue\">'BloodPressure'</span> <i>"entryURL"</i><span style=\"color: navy\">;</span>\r\n parent<span style=\"color: navy\"><b> -> </b></span>entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Measurement'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">parentTable</span><b> then </b>parentTable<span style=\"color: navy\">(</span><span style=\"color: maroon\">parent</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">parentTable</span><span style=\"color: navy\">)</span> <i>"bpEntryResource"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"bpBundleEntry"</i><span style=\"color: navy\">;</span>\r\n src.component<b> as </b><span style=\"color: maroon\">comp</span><span style=\"color: navy\"><b> -> </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><b> then</b><span style=\"color: navy\"> {\r\n</span> comp<span style=\"color: navy\"><b> -> </b></span>entry.fullUrl = <span style=\"color: blue\">'Component 1'</span> <i>"entryURL"</i><span style=\"color: navy\">;</span>\r\n comp<b> where </b>(comp.code.coding.code = '8480-6')<span style=\"color: navy\"><b> -> </b></span>entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Measurement'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">sysTable</span><b> then </b>systolicTable<span style=\"color: navy\">(</span><span style=\"color: maroon\">comp</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">sysTable</span><span style=\"color: navy\">)</span> <i>"systolicEntryResource"</i><span style=\"color: navy\">;</span>\r\n comp<b> where </b>(comp.code.coding.code = '8462-4')<span style=\"color: navy\"><b> -> </b></span>entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Measurement'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">diasTable</span><b> then </b>diastolicTable<span style=\"color: navy\">(</span><span style=\"color: maroon\">comp</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">diasTable</span><span style=\"color: navy\">)</span> <i>"diastolicEntryResource"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"bpComponentEntries"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>systolicTable<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">comp</span>, <b>target</b> <span style=\"color: maroon\">sysTable</span><span style=\"color: navy\"> : </span>Measurement<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> comp.code<span style=\"color: navy\"><b> -> </b></span>sysTable.measurement_concept_id = <span style=\"color: blue\">'3004249'</span><span style=\"color: navy\">;</span>\r\n comp.value<span style=\"color: navy\"> : </span>quantity<b> as </b><span style=\"color: maroon\">qty</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">sysTable</span><b> then</b><span style=\"color: navy\"> {\r\n</span> qty.value<span style=\"color: navy\"><b> -> </b></span>sysTable.value_as_number<span style=\"color: navy\">;</span>\r\n qty.unit<span style=\"color: navy\"><b> -> </b></span>sysTable.unit_concept_id<span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"systolicMeasure"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>diastolicTable<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">comp</span>, <b>target</b> <span style=\"color: maroon\">diasTable</span><span style=\"color: navy\"> : </span>Measurement<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> comp.code<span style=\"color: navy\"><b> -> </b></span>diasTable.measurement_concept_id = <span style=\"color: blue\">'3012888'</span><span style=\"color: navy\">;</span>\r\n comp.value<span style=\"color: navy\"> : </span>quantity<b> as </b><span style=\"color: maroon\">qty</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">diasTable</span><b> then</b><span style=\"color: navy\"> {\r\n</span> qty.value<span style=\"color: navy\"><b> -> </b></span>diasTable.value_as_number<span style=\"color: navy\">;</span>\r\n qty.unit<span style=\"color: navy\"><b> -> </b></span>diasTable.unit_concept_id<span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"diastolicMeasure"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>parentTable<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>BloodPressure, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\"> : </span>Measurement<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> src.code<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {\r\n</span> s.coding<b> as </b><span style=\"color: maroon\">sc</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {\r\n</span> sc.code<b> as </b><span style=\"color: maroon\">a</span><span style=\"color: navy\"><b> -> </b></span>tgt.measurement_type_concept_id = <b>translate</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">a</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'http://hl7.org/fhir/uv/omop/ConceptMap/BloodPressureCodes'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'code'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n src.effective<span style=\"color: navy\"> : </span>dateTime<b> as </b><span style=\"color: maroon\">edt</span><span style=\"color: navy\"><b> -> </b></span> tgt.measurement_datetime = <span style=\"color: maroon\">edt</span><span style=\"color: navy\">, </span> tgt.measurement_date = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">edt</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'date'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n src.effective<span style=\"color: navy\"> : </span>Period<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {\r\n</span> s.start<b> as </b><span style=\"color: maroon\">eps</span><span style=\"color: navy\"><b> -> </b></span> tgt.measurement_datetime = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">eps</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'dateTime'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> tgt.measurement_date = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">eps</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'date'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n src.issued<b> as </b><span style=\"color: maroon\">s</span><b> where </b>(src.issued.toDate != src.effectiveDateTime)<span style=\"color: navy\"><b> -> </b></span>tgt.measurement_source_value = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">s</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'string'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span></pre></div>"
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"url" : "http://hl7.org/fhir/uv/omop/StructureMap/BloodPressureVitalSignsMap",
"version" : "1.0.0",
"name" : "BloodPressureVitalSignsMap",
"title" : "Mapping Blood Pressure Vital Signs resource to Measurement OMOP Domain",
"status" : "draft",
"date" : "2026-04-27T16:39:08+00:00",
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"description" : "This mapping maps blood pressure FHIR Vital Signs instances that are considered measurements to OMOP Measurement Table objects.",
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"parameter" : [
{
"valueId" : "a"
},
{
"valueString" : "http://hl7.org/fhir/uv/omop/ConceptMap/BloodPressureCodes"
},
{
"valueString" : "code"
}
]
}
]
}
]
}
]
},
{
"name" : "effectiveDateTime",
"source" : [
{
"context" : "src",
"type" : "dateTime",
"element" : "effective",
"variable" : "edt"
}
],
"target" : [
{
"context" : "tgt",
"element" : "measurement_datetime",
"transform" : "copy",
"parameter" : [
{
"valueId" : "edt"
}
]
},
{
"context" : "tgt",
"element" : "measurement_date",
"transform" : "cast",
"parameter" : [
{
"valueId" : "edt"
},
{
"valueString" : "date"
}
]
}
]
},
{
"name" : "effectivePeriod",
"source" : [
{
"context" : "src",
"type" : "Period",
"element" : "effective",
"variable" : "s"
}
],
"target" : [
{
"transform" : "copy",
"parameter" : [
{
"valueId" : "tgt"
}
]
}
],
"rule" : [
{
"name" : "start",
"source" : [
{
"context" : "s",
"element" : "start",
"variable" : "eps"
}
],
"target" : [
{
"context" : "tgt",
"element" : "measurement_datetime",
"transform" : "cast",
"parameter" : [
{
"valueId" : "eps"
},
{
"valueString" : "dateTime"
}
]
},
{
"context" : "tgt",
"element" : "measurement_date",
"transform" : "cast",
"parameter" : [
{
"valueId" : "eps"
},
{
"valueString" : "date"
}
]
}
]
}
]
},
{
"name" : "issued",
"source" : [
{
"context" : "src",
"element" : "issued",
"variable" : "s",
"condition" : "(src.issued.toDate != src.effectiveDateTime)"
}
],
"target" : [
{
"context" : "tgt",
"element" : "measurement_source_value",
"transform" : "cast",
"parameter" : [
{
"valueId" : "s"
},
{
"valueString" : "string"
}
]
}
]
}
]
}
]
}
IG © 2023+ HL7 International / Biomedical Research and Regulation.
Package hl7.fhir.uv.omop#1.0.0 based on FHIR 5.0.0.
Generated
2026-04-27
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