minimal Common Oncology Data Elements (mCODE) Implementation Guide
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minimal Common Oncology Data Elements (mCODE) Implementation Guide, published by HL7 International / Clinical Interoperability Council. This guide is not an authorized publication; it is the continuous build for version 4.0.0-ballot built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-mCODE-ig/ and changes regularly. See the Directory of published versions

: Human Specimen Type Value Set - JSON Representation

Active as of 2024-10-30 Maturity Level: 1

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{
  "resourceType" : "ValueSet",
  "id" : "mcode-human-specimen-type-vs",
  "text" : {
    "status" : "extensions",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ValueSet mcode-human-specimen-type-vs</b></p><a name=\"mcode-human-specimen-type-vs\"> </a><a name=\"hcmcode-human-specimen-type-vs\"> </a><a name=\"mcode-human-specimen-type-vs-en-US\"> </a><ul><li>Include these codes as defined in <a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html\"><code>http://terminology.hl7.org/CodeSystem/v2-0487</code></a><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-AMN\">AMN</a></td><td>Amniotic fluid</td><td>Amniotic fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-BIFL\">BIFL</a></td><td>Bile Fluid</td><td>Bile Fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-BLD\">BLD</a></td><td>Whole blood</td><td>Whole blood</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-BLDA\">BLDA</a></td><td>Blood arterial</td><td>Blood arterial</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-BLDCO\">BLDCO</a></td><td>Cord blood</td><td>Cord blood</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-BLDV\">BLDV</a></td><td>Blood venous</td><td>Blood venous</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-BON\">BON</a></td><td>Bone</td><td>Bone</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-CSERU\">CSERU</a></td><td>Serum, Convalescent</td><td>Serum, Convalescent</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-CSF\">CSF</a></td><td>Cerebral spinal fluid</td><td>Cerebral spinal fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-CVM\">CVM</a></td><td>Cervical Mucus</td><td>Cervical Mucus</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-DUFL\">DUFL</a></td><td>Duodenal fluid</td><td>Duodenal fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-FBLOOD\">FBLOOD</a></td><td>Blood, Fetal</td><td>Blood, Fetal</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-FGA\">FGA</a></td><td>Fluid, Abdomen</td><td>Fluid,  Abdomen</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-GENV\">GENV</a></td><td>Genital vaginal</td><td>Genital vaginal</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-HYDC\">HYDC</a></td><td>Fluid, Hydrocele</td><td>Fluid, Hydrocele</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-KIDFLD\">KIDFLD</a></td><td>Fluid, Kidney</td><td>Fluid, Kidney</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-LSAC\">LSAC</a></td><td>Fluid, Lumbar Sac</td><td>Fluid, Lumbar Sac</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-MAR\">MAR</a></td><td>Marrow</td><td>Marrow</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-PAFL\">PAFL</a></td><td>Pancreatic fluid</td><td>Pancreatic fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-PCFL\">PCFL</a></td><td>Fluid, Pericardial</td><td>Fluid, Pericardial</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-PLC\">PLC</a></td><td>Placenta</td><td>Placenta</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-PLR\">PLR</a></td><td>Pleural fluid (thoracentesis fluid)</td><td>Pleural fluid (thoracentesis fluid)</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-SAL\">SAL</a></td><td>Saliva</td><td>Saliva</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-SKN\">SKN</a></td><td>Skin</td><td>Skin</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-SMN\">SMN</a></td><td>Seminal fluid</td><td>Seminal fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-SNV\">SNV</a></td><td>Fluid, synovial (Joint fluid)</td><td>Fluid, synovial (Joint fluid)</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-SPT\">SPT</a></td><td>Sputum</td><td>Sputum</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-TISS\">TISS</a></td><td>Tissue</td><td>Tissue</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-TUMOR\">TUMOR</a></td><td>Tumor</td><td>Tumor</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-VITF\">VITF</a></td><td>Vitreous Fluid</td><td>Vitreous Fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-WND\">WND</a></td><td>Wound</td><td>Wound</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-UR\">UR</a></td><td>Urine</td><td>Urine</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0487.html#v2-0487-STL\">STL</a></td><td>Stool = Fecal</td><td>Stool = Fecal</td></tr></table></li></ul></div>"
  },
  "extension" : [
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
      "valueInteger" : 1
    },
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
      "valueCode" : "cic"
    }
  ],
  "url" : "http://hl7.org/fhir/us/mcode/ValueSet/mcode-human-specimen-type-vs",
  "identifier" : [
    {
      "system" : "urn:ietf:rfc:3986",
      "value" : "urn:oid:2.16.840.1.113883.4.642.40.15.48.38"
    }
  ],
  "version" : "4.0.0-ballot",
  "name" : "HumanSpecimenTypeVS",
  "title" : "Human Specimen Type Value Set",
  "status" : "active",
  "experimental" : false,
  "date" : "2024-10-30T15:45:56+00:00",
  "publisher" : "HL7 International / Clinical Interoperability Council",
  "contact" : [
    {
      "name" : "HL7 International / Clinical Interoperability Council",
      "telecom" : [
        {
          "system" : "url",
          "value" : "http://www.hl7.org/Special/committees/cic"
        },
        {
          "system" : "email",
          "value" : "ciclist@lists.HL7.org"
        }
      ]
    }
  ],
  "description" : "Specimen taken from a human subject. The values include the subset of codes in the HL7 Specimen Type code system (https://terminology.hl7.org/CodeSystem-v2-0487.html) representing body sites and body fluids likely to be used in tumor marker or genomic testing. The most specific term available should be used, for example, for arterial blood, use #BLDA not #BLD.",
  "jurisdiction" : [
    {
      "coding" : [
        {
          "system" : "urn:iso:std:iso:3166",
          "code" : "US",
          "display" : "United States of America"
        }
      ]
    }
  ],
  "compose" : {
    "include" : [
      {
        "system" : "http://terminology.hl7.org/CodeSystem/v2-0487",
        "concept" : [
          {
            "code" : "AMN",
            "display" : "Amniotic fluid"
          },
          {
            "code" : "BIFL",
            "display" : "Bile Fluid"
          },
          {
            "code" : "BLD",
            "display" : "Whole blood"
          },
          {
            "code" : "BLDA",
            "display" : "Blood arterial"
          },
          {
            "code" : "BLDCO",
            "display" : "Cord blood"
          },
          {
            "code" : "BLDV",
            "display" : "Blood venous"
          },
          {
            "code" : "BON",
            "display" : "Bone"
          },
          {
            "code" : "CSERU",
            "display" : "Serum, Convalescent"
          },
          {
            "code" : "CSF",
            "display" : "Cerebral spinal fluid"
          },
          {
            "code" : "CVM",
            "display" : "Cervical Mucus"
          },
          {
            "code" : "DUFL",
            "display" : "Duodenal fluid"
          },
          {
            "code" : "FBLOOD",
            "display" : "Blood, Fetal"
          },
          {
            "code" : "FGA",
            "display" : "Fluid, Abdomen"
          },
          {
            "code" : "GENV",
            "display" : "Genital vaginal"
          },
          {
            "code" : "HYDC",
            "display" : "Fluid, Hydrocele"
          },
          {
            "code" : "KIDFLD",
            "display" : "Fluid, Kidney"
          },
          {
            "code" : "LSAC",
            "display" : "Fluid, Lumbar Sac"
          },
          {
            "code" : "MAR",
            "display" : "Marrow"
          },
          {
            "code" : "PAFL",
            "display" : "Pancreatic fluid"
          },
          {
            "code" : "PCFL",
            "display" : "Fluid, Pericardial"
          },
          {
            "code" : "PLC",
            "display" : "Placenta"
          },
          {
            "code" : "PLR",
            "display" : "Pleural fluid (thoracentesis fluid)"
          },
          {
            "code" : "SAL",
            "display" : "Saliva"
          },
          {
            "code" : "SKN",
            "display" : "Skin"
          },
          {
            "code" : "SMN",
            "display" : "Seminal fluid"
          },
          {
            "code" : "SNV",
            "display" : "Fluid, synovial (Joint fluid)"
          },
          {
            "code" : "SPT",
            "display" : "Sputum"
          },
          {
            "code" : "TISS",
            "display" : "Tissue"
          },
          {
            "code" : "TUMOR",
            "display" : "Tumor"
          },
          {
            "code" : "VITF",
            "display" : "Vitreous Fluid"
          },
          {
            "code" : "WND",
            "display" : "Wound"
          },
          {
            "code" : "UR",
            "display" : "Urine"
          },
          {
            "code" : "STL",
            "display" : "Stool = Fecal"
          }
        ]
      }
    ]
  }
}