minimal Common Oncology Data Elements (mCODE) Implementation Guide
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minimal Common Oncology Data Elements (mCODE) Implementation Guide, published by HL7 International / Clinical Interoperability Council. This guide is not an authorized publication; it is the continuous build for version 4.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-mCODE-ig/ and changes regularly. See the Directory of published versions

: gx-genomics-report-adam-anyperson - XML Representation

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<DiagnosticReport xmlns="http://hl7.org/fhir">
  <id value="gx-genomics-report-adam-anyperson"/>
  <meta>
    <profile
             value="http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-genomics-report"/>
  </meta>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: DiagnosticReport gx-genomics-report-adam-anyperson</b></p><a name="gx-genomics-report-adam-anyperson"> </a><a name="hcgx-genomics-report-adam-anyperson"> </a><a name="gx-genomics-report-adam-anyperson-en-US"> </a><h2><span title="Codes:{http://loinc.org 51969-4}">Genetic analysis report</span> (<span title="Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}">Genetics</span>) </h2><table class="grid"><tr><td>Subject</td><td>Adam Anyperson  Male, DoB: 1990-01-01 ( Medical Record Number: 123456789)</td></tr><tr><td>When For</td><td>2022-02-15 19:28:58+0500</td></tr><tr><td>Performer</td><td> <a href="Organization-gx-us-core-organization-gensop-inc.html">Organization Gensop Labs, Inc.</a></td></tr></table><p><b>Report Details</b></p><table class="grid"><tr><td><b>Code</b></td><td><b>Value</b></td><td><b>Flags</b></td><td><b>When For</b></td></tr><tr><td><a href="Observation-gx-genomic-variant-somatic-bap1-indel.html"><span title="Codes:{http://loinc.org 69548-6}">Genetic variant assessment</span></a></td><td><span title="Codes:{http://loinc.org LA9633-4}">Present</span></td><td>Final</td><td>2019-04-01</td></tr><tr><td><a href="Observation-gx-genomic-variant-somatic-cdkn2a-cnv.html"><span title="Codes:{http://loinc.org 69548-6}">Genetic variant assessment</span></a></td><td><span title="Codes:{http://loinc.org LA9633-4}">Present</span></td><td>Final</td><td>2019-04-01</td></tr><tr><td><a href="Observation-gx-genomic-variant-somatic-cdkn2b-cnv.html"><span title="Codes:{http://loinc.org 69548-6}">Genetic variant assessment</span></a></td><td><span title="Codes:{http://loinc.org LA9633-4}">Present</span></td><td>Final</td><td>2019-04-01</td></tr><tr><td><a href="Observation-gx-genomic-variant-somatic-kdm5d.html"><span title="Codes:{http://loinc.org 69548-6}">Genetic variant assessment</span></a></td><td><span title="Codes:{http://loinc.org LA9633-4}">Present</span></td><td>Final</td><td>2019-04-01</td></tr><tr><td><a href="Observation-gx-genomic-variant-somatic-mtap.html"><span title="Codes:{http://loinc.org 69548-6}">Genetic variant assessment</span></a></td><td><span title="Codes:{http://loinc.org LA9633-4}">Present</span></td><td>Final</td><td>2019-04-01</td></tr><tr><td><a href="Observation-gx-genomic-variant-somatic-mycn.html"><span title="Codes:{http://loinc.org 69548-6}">Genetic variant assessment</span></a></td><td><span title="Codes:{http://loinc.org LA9633-4}">Present</span></td><td>Final</td><td>2019-04-01</td></tr><tr><td><a href="Observation-gx-genomic-variant-somatic-pof1b.html"><span title="Codes:{http://loinc.org 69548-6}">Genetic variant assessment</span></a></td><td><span title="Codes:{http://loinc.org LA9633-4}">Present</span></td><td>Final</td><td>2019-04-01</td></tr><tr><td><a href="Observation-gx-genomic-variant-somatic-polrmt.html"><span title="Codes:{http://loinc.org 69548-6}">Genetic variant assessment</span></a></td><td><span title="Codes:{http://loinc.org LA9633-4}">Present</span></td><td>Final</td><td>2019-04-01</td></tr><tr><td><a href="Observation-gx-genomic-diagnostic-implication-bap1.html"><span title="Codes:{http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs diagnostic-implication}">Diagnostic Implication</span></a></td><td/><td>Final</td><td>2019-04-01</td></tr><tr><td><a href="Observation-gx-genomic-diagnostic-implication-pof1b.html"><span title="Codes:{http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs diagnostic-implication}">Diagnostic Implication</span></a></td><td/><td>Final</td><td>2019-04-01</td></tr><tr><td><a href="Observation-gx-genomic-diagnostic-implication-polrmt.html"><span title="Codes:{http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs diagnostic-implication}">Diagnostic Implication</span></a></td><td/><td>Final</td><td>2019-04-01</td></tr><tr><td><a href="Observation-gx-genomic-variant-fusion-met-alk.html"><span title="Codes:{http://loinc.org 69548-6}">Genetic variant assessment</span></a></td><td><span title="Codes:{http://loinc.org LA9633-4}">Present</span></td><td>Final</td><td>2019-04-01</td></tr><tr><td><a href="Observation-gx-genomic-variant-pertinent-negative-nras-kit-braf.html"><span title="Codes:{http://loinc.org 69548-6}">Genetic variant assessment</span></a></td><td><span title="Codes:{http://loinc.org LA9634-2}">Absent</span></td><td>Final</td><td>2019-04-01</td></tr><tr><td><a href="Observation-gx-genomic-tmb.html"><span title="Codes:{http://loinc.org 94076-7}">Mutations/Megabase [# Ratio] in Tumor</span></a></td><td>57.1 1/1000000{Base}<span style="background: LightGoldenRodYellow"> (Details: UCUM  code1/1000000{Base} = '1/1000000{Base}')</span></td><td>Final</td><td>2019-04-01</td></tr><tr><td><a href="Observation-gx-genomic-msi.html"><span title="Codes:{http://loinc.org 81695-9}">Microsatellite instability [Interpretation] in Cancer specimen Qualitative</span></a></td><td><span title="Codes:{http://loinc.org LA26203-2}">MSI-H</span></td><td>Final</td><td>2019-04-01</td></tr><tr><td><a href="Observation-gx-genomic-therapeutic-implication-alectinib.html"><span title="Codes:{http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs therapeutic-implication}">Therapeutic Implication</span></a></td><td/><td>Final</td><td>2019-04-01</td></tr><tr><td><a href="Observation-gx-genomic-therapeutic-implication-brigatinib.html"><span title="Codes:{http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs therapeutic-implication}">Therapeutic Implication</span></a></td><td/><td>Final</td><td>2019-04-01</td></tr><tr><td><a href="Observation-gx-genomic-therapeutic-implication-ceritinib.html"><span title="Codes:{http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs therapeutic-implication}">Therapeutic Implication</span></a></td><td/><td>Final</td><td>2019-04-01</td></tr><tr><td><a href="Observation-gx-genomic-therapeutic-implication-crizotinib.html"><span title="Codes:{http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs therapeutic-implication}">Therapeutic Implication</span></a></td><td/><td>Final</td><td>2019-04-01</td></tr><tr><td><a href="Observation-gx-genomic-therapeutic-implication-lorlatinib.html"><span title="Codes:{http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs therapeutic-implication}">Therapeutic Implication</span></a></td><td/><td>Final</td><td>2019-04-01</td></tr></table></div>
  </text>
  <basedOn>🔗 
    <reference value="ServiceRequest/gx-order-tumornormal-gensop-inc"/>
  </basedOn>
  <status value="final"/>
  <category>
    <coding>
      <system value="http://terminology.hl7.org/CodeSystem/v2-0074"/>
      <code value="GE"/>
    </coding>
  </category>
  <code>
    <coding>
      <system value="http://loinc.org"/>
      <code value="51969-4"/>
      <display value="Genetic analysis report"/>
    </coding>
  </code>
  <subject>🔗 
    <reference value="Patient/gx-cancer-patient-adam-anyperson"/>
  </subject>
  <effectiveDateTime value="2022-02-15T19:28:58+05:00"/>
  <performer>🔗 
    <reference value="Organization/gx-us-core-organization-gensop-inc"/>
  </performer>
  <resultsInterpreter>🔗 
    <reference value="Practitioner/gx-practitioner-test-pathologist"/>
  </resultsInterpreter>
  <specimen>🔗 
    <reference value="Specimen/gx-genomic-specimen-tumornormal-tumor"/>
  </specimen>
  <specimen>🔗 
    <reference value="Specimen/gx-genomic-specimen-tumornormal-normal"/>
  </specimen>
  <result>🔗 
    <reference value="Observation/gx-genomic-variant-somatic-bap1-indel"/>
  </result>
  <result>🔗 
    <reference value="Observation/gx-genomic-variant-somatic-cdkn2a-cnv"/>
  </result>
  <result>🔗 
    <reference value="Observation/gx-genomic-variant-somatic-cdkn2b-cnv"/>
  </result>
  <result>🔗 
    <reference value="Observation/gx-genomic-variant-somatic-kdm5d"/>
  </result>
  <result>🔗 
    <reference value="Observation/gx-genomic-variant-somatic-mtap"/>
  </result>
  <result>🔗 
    <reference value="Observation/gx-genomic-variant-somatic-mycn"/>
  </result>
  <result>🔗 
    <reference value="Observation/gx-genomic-variant-somatic-pof1b"/>
  </result>
  <result>🔗 
    <reference value="Observation/gx-genomic-variant-somatic-polrmt"/>
  </result>
  <result>🔗 
    <reference value="Observation/gx-genomic-diagnostic-implication-bap1"/>
  </result>
  <result>🔗 
    <reference value="Observation/gx-genomic-diagnostic-implication-pof1b"/>
  </result>
  <result>🔗 
    <reference value="Observation/gx-genomic-diagnostic-implication-polrmt"/>
  </result>
  <result>🔗 
    <reference value="Observation/gx-genomic-variant-fusion-met-alk"/>
  </result>
  <result>🔗 
    <reference
               value="Observation/gx-genomic-variant-pertinent-negative-nras-kit-braf"/>
  </result>
  <result>🔗 
    <reference value="Observation/gx-genomic-tmb"/>
  </result>
  <result>🔗 
    <reference value="Observation/gx-genomic-msi"/>
  </result>
  <result>🔗 
    <reference
               value="Observation/gx-genomic-therapeutic-implication-alectinib"/>
  </result>
  <result>🔗 
    <reference
               value="Observation/gx-genomic-therapeutic-implication-brigatinib"/>
  </result>
  <result>🔗 
    <reference
               value="Observation/gx-genomic-therapeutic-implication-ceritinib"/>
  </result>
  <result>🔗 
    <reference
               value="Observation/gx-genomic-therapeutic-implication-crizotinib"/>
  </result>
  <result>🔗 
    <reference
               value="Observation/gx-genomic-therapeutic-implication-lorlatinib"/>
  </result>
</DiagnosticReport>