minimal Common Oncology Data Elements (mCODE) Implementation Guide
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minimal Common Oncology Data Elements (mCODE) Implementation Guide, published by HL7 International / Clinical Interoperability Council. This guide is not an authorized publication; it is the continuous build for version 4.0.0-ballot built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-mCODE-ig/ and changes regularly. See the Directory of published versions

Example Observation: gx-genomic-variant-somatic-polrmt

Generated Narrative: Observation gx-genomic-variant-somatic-polrmt

status: Final

category: Laboratory

code: Genetic variant assessment

subject: Adam Anyperson Male, DoB: 1990-01-01 ( Medical Record Number: 123456789)

effective: 2019-04-01

performer: Practitioner Owen Oncologist

value: Present

method: Sequencing

component

code: Gene studied [ID]

value: POLRMT

component

code: Genomic source class [Type]

value: Somatic

component

code: Molecular Consequence

value: missense_variant

component

code: Transcript reference sequence [ID]

value: NM_005035

component

code: DNA change (c.HGVS)

value: NM_005035.4:c.598G>A

component

code: Amino acid change (pHGVS)

value: NP_005026.3:p.(Gly200Arg)

component

code: Sample variant allelic frequency [NFr]

value: 75.6 % (Details: UCUM code% = '%')

component

code: Human reference sequence assembly version

value: GRCh37