Clinical Genomics Resource Incubator
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Clinical Genomics Resource Incubator, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/cg-incubator/ and changes regularly. See the Directory of published versions

ValueSet: Molecular Definition Organism (Experimental)

Official URL: http://hl7.org/fhir/uv/cg-incubator/ValueSet/moleculardefinition-organism Version: 0.1.0-ci-build
Standards status: Informative Draft as of 2026-03-13 Maturity Level: 0 Computable Name: MolecularDefinitionOrganism
Other Identifiers: OID:2.16.840.1.113883.4.642.3.3007

The organism whose genome the genomeAssembly describes. Codes are drawn from the NCBI Taxonomy database (https://www.ncbi.nlm.nih.gov/taxonomy). The binding is extensible to accommodate any organism with a sequenced genome. Commonly used taxon IDs include 9606 (Homo sapiens) and 10090 (Mus musculus).

References

Logical Definition (CLD)

Last updated: 2026-03-13 00:00:00+0000

Profile: Shareable ValueSet

 

Expansion

Expansion based on code system fragment http://www.ncbi.nlm.nih.gov/taxonomy NCBI Taxonomy (fragment) v0.1.0-ci-build (CodeSystem)

Expansion performed internally based on codesystem NCBI Taxonomy (fragment) v0.1.0-ci-build (CodeSystem)

This value set contains at least 13 concepts

SystemCodeDisplay (en)JSONXML
http://www.ncbi.nlm.nih.gov/taxonomy  9606Homo sapiens
http://www.ncbi.nlm.nih.gov/taxonomy  10090Mus musculus
http://www.ncbi.nlm.nih.gov/taxonomy  10116Rattus norvegicus
http://www.ncbi.nlm.nih.gov/taxonomy  7955Danio rerio
http://www.ncbi.nlm.nih.gov/taxonomy  2697049Severe acute respiratory syndrome coronavirus 2
http://www.ncbi.nlm.nih.gov/taxonomy  11520Influenza B virus
http://www.ncbi.nlm.nih.gov/taxonomy  11320Influenza A virus
http://www.ncbi.nlm.nih.gov/taxonomy  11234Measles morbillivirus
http://www.ncbi.nlm.nih.gov/taxonomy  11250Human orthopneumovirus
http://www.ncbi.nlm.nih.gov/taxonomy  12227Human rhinovirus A
http://www.ncbi.nlm.nih.gov/taxonomy  11103Hepacivirus C
http://www.ncbi.nlm.nih.gov/taxonomy  10359Human cytomegalovirus
http://www.ncbi.nlm.nih.gov/taxonomy  10376Human herpesvirus 4

Description of the above table(s).