Clinical Genomics Resource Incubator
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Clinical Genomics Resource Incubator, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/cg-incubator/ and changes regularly. See the Directory of published versions

CodeSystem: NCBI Taxonomy (fragment)

Official URL: http://www.ncbi.nlm.nih.gov/taxonomy Version: 0.1.0-ci-build
Standards status: Trial-use Active as of 2026-03-16 Maturity Level: 1 Computable Name: NCBITaxonomyFragment

Copyright/Legal: NCBI Taxonomy data is a product of the National Center for Biotechnology Information (NCBI), part of the National Library of Medicine at the National Institutes of Health. The database is freely available in the public domain.

A fragment of the NCBI Taxonomy database (https://www.ncbi.nlm.nih.gov/taxonomy) containing taxon IDs referenced by examples and profiles in this IG. Numeric taxon IDs are used as codes; scientific names are used as display text. This fragment covers commonly used research organisms and representative clinical viral pathogens. Add entries here as new examples reference additional taxon IDs.

This Code system is referenced in the definition of the following value sets:

This case-insensitive code system http://www.ncbi.nlm.nih.gov/taxonomy provides a fragment that includes following codes:

CodeDisplay
9606 Homo sapiens
10090 Mus musculus
10116 Rattus norvegicus
7955 Danio rerio
2697049 Severe acute respiratory syndrome coronavirus 2
11520 Influenza B virus
11320 Influenza A virus
11234 Measles morbillivirus
11250 Human orthopneumovirus
12227 Human rhinovirus A
11103 Hepacivirus C
10359 Human cytomegalovirus
10376 Human herpesvirus 4

Description of the above table(s).