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4.3.2.435 CodeSystem http://hl7.org/fhir/genomicstudy-dataformat

Clinical Genomics icon Work Group  Maturity Level: 1 Trial Use Use Context: Country: World, Not yet ready for Production use
Official URL: http://hl7.org/fhir/genomicstudy-dataformat Version: 6.0.0-ballot2
active as of 2022-08-17 Computable Name: GenomicStudyDataFormat
Flags: Experimental, CaseSensitive, Complete. All codes ValueSet: Genomic Study Data Format OID: 2.16.840.1.113883.4.642.4.1978

This Code system is used in the following value sets:

4.3.2.435.1 Definition

The data format relevant to genomics. These formats and relevant codes were pulled from Integrative Genomics Viewer Documentation icon by Broad Institute.

4.3.2.435.2 Content

Generated Narrative: CodeSystem genomicstudy-dataformat

Last updated: 2024-11-10T12:23:12.156+11:00

Profile: Shareable CodeSystem

This case-sensitive code system http://hl7.org/fhir/genomicstudy-dataformat defines the following codes:

CodeDisplayCopy
bam BAM btn btn
bed BED btn btn
bedpe BEDPE btn btn
bedgraph BedGraph btn btn
bigbed bigBed btn btn
bigWig bigWig btn btn
birdsuite-files Birdsuite-Files btn btn
broadpeak broadPeak btn btn
cbs CBS btn btn
chemical-reactivity-probing-profiles Chemical-Reactivity-Probing-Profiles btn btn
chrom-sizes chrom-sizes btn btn
cn CN btn btn
custom-file-formats Custom-File-Formats btn btn
cytoband Cytoband btn btn
fasta FASTA btn btn
gct GCT btn btn
cram CRAM btn btn
genepred genePred btn btn
gff-gtf GFF/GTF btn btn
gistic GISTIC btn btn
goby Goby btn btn
gwas GWAS btn btn
igv IGV btn btn
loh LOH btn btn
maf-multiple-alignment-format MAF-Multiple Alignment Format btn btn
maf-mutation-annotation-format MAF-Mutation-Annotation-Format btn btn
merged-bam-file Merged BAM File btn btn
mut MUT btn btn
narrowpeak narrowPeak btn btn
psl PSL btn btn
res RES btn btn
rna-secondary-structure-formats RNA-Secondary-Structure-Formats btn btn
sam SAM btn btn
sample-info-attributes-file Sample-Info-Attributes-file btn btn
seg SEG btn btn
tdf TDF btn btn
track-line Track Line btn btn
type-line Type Line btn btn
vcf VCF btn btn
wig WIG btn btn

 

See the full registry of code systems defined as part of FHIR.

Explanation of the columns that may appear on this page:

Level A few code lists that FHIR defines are hierarchical - each code is assigned a level. See Code System for further information.
Source The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance). If the code is in italics, this indicates that the code is not selectable ('Abstract')
Display The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code